GREMLIN Database
Q7LXU5 - ATP synthase subunit K (AtpK)
UniProt: Q7LXU5 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 102 (80)
Sequences: 470 (250)
Seq/√Len: 28.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
47_A90_G5.3581.00
62_G80_V3.0921.00
42_L46_L2.9611.00
41_G45_G2.9001.00
45_G52_G2.4810.99
57_M65_V2.3200.99
28_D31_Q2.2610.98
81_A85_G2.1740.98
52_G81_A2.0130.96
45_G73_F1.9760.96
55_V84_E1.8370.94
50_G89_Y1.8050.94
61_A95_V1.5460.87
85_G92_L1.4000.81
93_F98_L1.3990.81
59_A80_V1.3510.78
24_Q70_R1.3420.78
92_L98_L1.3220.77
48_A84_E1.2910.75
39_G61_A1.2770.74
41_G52_G1.2200.71
38_I68_E1.1990.69
72_M82_I1.1810.68
41_G46_L1.1770.68
51_A76_V1.1770.68
52_G56_G1.1520.66
44_V87_A1.1480.66
79_F84_E1.1450.66
40_A87_A1.1070.63
83_G86_I1.0880.62
32_G40_A1.0860.61
26_P29_T1.0620.60
25_A94_A1.0560.59
58_A64_G1.0520.59
54_A83_G1.0300.57
72_M75_T1.0290.57
19_V91_I1.0190.56
80_V84_E1.0080.56
47_A85_G0.9980.55
50_G90_G0.9850.54
62_G96_L0.9850.54
47_A77_L0.9850.54
36_I47_A0.9770.53
45_G49_I0.9690.53
54_A89_Y0.9640.52
42_L97_M0.9550.52
39_G50_G0.9470.51
73_F80_V0.9370.50
29_T32_G0.9130.48
23_A26_P0.9030.48
50_G54_A0.8730.45
63_V94_A0.8550.44
51_A55_V0.8490.44
67_T70_R0.8420.43
29_T96_L0.8360.43
84_E87_A0.8330.42
42_L49_I0.8250.42
51_A84_E0.8030.40
57_M60_A0.7890.39
25_A30_A0.7840.39
19_V22_A0.7700.38
73_F78_I0.7620.37
39_G70_R0.7600.37
40_A68_E0.7570.37
37_N88_V0.7400.36
82_I85_G0.7400.36
21_A24_Q0.7320.35
61_A75_T0.7190.34
59_A98_L0.7110.34
37_N41_G0.7100.33
51_A66_L0.7070.33
77_L83_G0.7050.33
74_G88_V0.7050.33
20_I59_A0.6920.32
60_A88_V0.6870.32
55_V82_I0.6860.32
39_G46_L0.6850.32
73_F79_F0.6840.32
78_I86_I0.6820.32
25_A42_L0.6800.31
49_I94_A0.6730.31
53_I60_A0.6660.31
29_T98_L0.6660.31
53_I85_G0.6650.30
43_A94_A0.6630.30
67_T88_V0.6600.30
37_N86_I0.6580.30
61_A78_I0.6500.29
20_I45_G0.6460.29
83_G87_A0.6400.29
83_G88_V0.6390.29
64_G96_L0.6330.28
68_E88_V0.6280.28
46_L71_D0.6260.28
38_I76_V0.6250.28
61_A84_E0.6240.28
59_A63_V0.6190.28
59_A76_V0.6160.27
47_A51_A0.6130.27
51_A89_Y0.6110.27
48_A75_T0.6080.27
73_F97_M0.6040.27
33_F36_I0.6010.26
63_V84_E0.5930.26
62_G91_I0.5900.26
26_P36_I0.5750.25
44_V96_L0.5730.25
38_I44_V0.5670.24
87_A92_L0.5640.24
48_A87_A0.5450.23
30_A59_A0.5430.23
22_A91_I0.5370.23
30_A47_A0.5340.23
86_I96_L0.5300.22
74_G82_I0.5210.22
20_I24_Q0.5190.22
30_A88_V0.5140.22
75_T96_L0.5020.21
82_I92_L0.5000.21
19_V28_D0.5000.21
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3j9tY 3 0.6765 99.6 0.442 Contact Map
2bl2A 3 0.7941 99.5 0.46 Contact Map
4v1gA 3 0.7745 99.3 0.532 Contact Map
4bemJ 1 0.9118 99.3 0.534 Contact Map
2xquA 3 0.7451 99.3 0.538 Contact Map
1wu0A 1 0.6667 99.3 0.539 Contact Map
3zk1A 5 0.7745 99.2 0.547 Contact Map
4cbkA 3 0.6373 99.2 0.547 Contact Map
1a91A 1 0.7353 99.2 0.559 Contact Map
4bemA 3 0.7451 99.2 0.562 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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