Q7LXT6 - SULSO - GREMLIN Contacts

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Q7LXT6 - GTP binding protein, hypothetical

UniProt:	Q7LXT6	Sequences: MLGKVIQLIKRSDLVVEVLDAREPSLTRSKKIEDIIVKNYKNILLVLNKGDLVPLWVLKAWKDYFKTEENIESVYVSATSHLGTKILRDTMKSLLKGNKGIVVFVGYPKSGKSSVINALKGRHSAQTSAHPLEYGYTKSIQLFKIDNKIYAWDTPGVIPPDGNELEKTIRGYNADLLEDPVKPALMLINRVIEFSKESLISVYKVDFNNPYELLERIAIRRGWFYKSTKEPNIDMAARAVIRDYHEGKIAYYTLPPSLYRDDKSNSI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	267 (244)
Sequences:	3232 (2120)
Seq/√Len:	135.7

BACSU - RBGA
SULSO - Q7LXT6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
218_A	231_P	4.157	1.00
57_V	253_T	3.969	1.00
203_Y	243_D	3.385	1.00
23_E	174_A	3.177	1.00
37_V	40_Y	2.928	1.00
128_S	136_Y	2.650	1.00
62_K	73_S	2.591	1.00
62_K	75_Y	2.517	1.00
18_V	115_V	2.491	1.00
209_N	212_E	2.370	1.00
28_R	33_E	2.357	1.00
199_L	203_Y	2.326	1.00
197_E	200_I	2.306	1.00
64_Y	68_E	2.271	1.00
25_S	65_F	2.224	1.00
90_T	93_S	2.093	1.00
120_K	143_F	2.066	1.00
213_L	217_I	2.061	1.00
53_V	58_L	2.034	1.00
46_V	76_V	2.021	1.00
126_Q	136_Y	2.009	1.00
173_N	187_L	1.944	1.00
244_Y	254_L	1.923	1.00
223_W	239_A	1.911	1.00
59_K	63_D	1.901	1.00
212_E	216_R	1.898	1.00
57_V	60_A	1.876	1.00
58_L	75_Y	1.836	1.00
232_N	235_M	1.831	1.00
55_L	251_Y	1.823	1.00
217_I	236_A	1.818	1.00
31_K	34_D	1.795	1.00
52_L	247_G	1.752	1.00
19_L	45_L	1.742	1.00
46_V	74_V	1.716	1.00
166_E	170_R	1.669	1.00
142_L	152_W	1.666	1.00
5_V	103_V	1.649	1.00
16_V	91_M	1.646	1.00
62_K	66_K	1.645	1.00
185_L	189_N	1.638	1.00
198_S	201_S	1.637	1.00
77_S	80_S	1.625	1.00
23_E	27_T	1.620	1.00
214_L	236_A	1.600	1.00
55_L	59_K	1.598	1.00
242_R	246_E	1.586	1.00
197_E	201_S	1.547	1.00
16_V	46_V	1.536	1.00
221_R	239_A	1.528	1.00
87_L	115_V	1.511	1.00
187_L	244_Y	1.491	1.00
234_D	238_R	1.467	1.00
219_I	224_F	1.466	1.00
223_W	235_M	1.465	1.00
104_F	115_V	1.452	1.00
18_V	48_N	1.443	1.00
120_K	124_S	1.436	1.00
211_Y	215_E	1.434	1.00
243_D	248_K	1.430	1.00
225_Y	232_N	1.430	1.00
92_K	148_K	1.420	1.00
19_L	47_L	1.416	1.00
144_K	150_Y	1.413	1.00
87_L	91_M	1.406	1.00
12_S	103_V	1.402	1.00
182_K	185_L	1.376	1.00
114_S	127_T	1.360	1.00
198_S	249_I	1.356	1.00
57_V	256_P	1.356	1.00
44_L	90_T	1.332	1.00
4_K	8_L	1.296	1.00
186_M	189_N	1.280	1.00
129_A	246_E	1.273	1.00
33_E	43_I	1.272	1.00
168_T	177_L	1.258	1.00
219_I	231_P	1.257	1.00
164_E	167_K	1.257	1.00
218_A	222_G	1.255	1.00
14_L	95_L	1.237	1.00
8_L	140_I	1.231	1.00
63_D	67_T	1.230	1.00
181_V	185_L	1.229	1.00
66_K	72_E	1.229	1.00
48_N	78_A	1.229	1.00
212_E	215_E	1.226	1.00
16_V	104_F	1.210	1.00
224_F	229_K	1.204	1.00
56_W	60_A	1.195	1.00
14_L	94_L	1.193	1.00
19_L	28_R	1.193	1.00
215_E	219_I	1.188	1.00
65_F	68_E	1.187	0.99
218_A	236_A	1.182	0.99
46_V	87_L	1.179	0.99
238_R	242_R	1.176	0.99
170_R	255_P	1.174	0.99
17_E	28_R	1.170	0.99
93_S	96_K	1.166	0.99
115_V	119_L	1.146	0.99
217_I	240_V	1.145	0.99
81_H	118_A	1.129	0.99
162_G	168_T	1.121	0.99
17_E	45_L	1.118	0.99
183_P	186_M	1.116	0.99
216_R	219_I	1.114	0.99
188_I	213_L	1.110	0.99
63_D	66_K	1.106	0.99
91_M	94_L	1.092	0.99
19_L	27_T	1.088	0.99
58_L	253_T	1.087	0.99
103_V	154_T	1.087	0.99
184_A	237_A	1.080	0.99
196_K	206_D	1.077	0.99
215_E	233_I	1.069	0.99
185_L	210_P	1.057	0.99
60_A	63_D	1.046	0.99
200_I	205_V	1.041	0.99
181_V	234_D	1.038	0.99
214_L	240_V	1.037	0.99
171_G	175_D	1.032	0.99
17_E	43_I	1.032	0.99
72_E	93_S	1.029	0.99
72_E	90_T	1.018	0.98
6_I	31_K	1.018	0.98
225_Y	230_E	1.018	0.98
48_N	77_S	1.005	0.98
182_K	189_N	0.996	0.98
5_V	157_V	0.994	0.98
184_A	188_I	0.993	0.98
77_S	82_L	0.991	0.98
15_V	36_I	0.989	0.98
46_V	115_V	0.982	0.98
71_I	75_Y	0.981	0.98
233_I	236_A	0.978	0.98
181_V	186_M	0.976	0.98
140_I	154_T	0.964	0.98
4_K	7_Q	0.960	0.98
213_L	218_A	0.960	0.98
170_R	173_N	0.958	0.98
167_K	171_G	0.955	0.98
195_S	199_L	0.953	0.98
16_V	102_V	0.952	0.98
168_T	172_Y	0.947	0.98
223_W	236_A	0.945	0.97
8_L	11_R	0.943	0.97
94_L	97_G	0.938	0.97
183_P	189_N	0.933	0.97
49_K	52_L	0.930	0.97
142_L	150_Y	0.928	0.97
187_L	254_L	0.924	0.97
86_I	89_D	0.912	0.97
173_N	244_Y	0.911	0.97
218_A	221_R	0.910	0.97
54_P	195_S	0.909	0.97
61_W	64_Y	0.907	0.97
74_V	78_A	0.897	0.97
170_R	190_R	0.896	0.97
65_F	69_E	0.895	0.96
195_S	198_S	0.895	0.96
185_L	188_I	0.893	0.96
183_P	190_R	0.891	0.96
162_G	167_K	0.891	0.96
211_Y	233_I	0.885	0.96
239_A	243_D	0.881	0.96
199_L	202_V	0.880	0.96
216_R	220_R	0.877	0.96
28_R	45_L	0.872	0.96
179_D	245_H	0.872	0.96
107_Y	158_I	0.871	0.96
218_A	223_W	0.867	0.96
34_D	37_V	0.867	0.96
16_V	44_L	0.866	0.96
81_H	84_T	0.865	0.96
44_L	94_L	0.855	0.95
187_L	241_I	0.852	0.95
236_A	240_V	0.851	0.95
182_K	186_M	0.848	0.95
84_T	88_R	0.847	0.95
187_L	191_V	0.845	0.95
47_L	61_W	0.839	0.95
245_H	254_L	0.837	0.95
87_L	95_L	0.836	0.95
226_K	230_E	0.836	0.95
168_T	171_G	0.836	0.95
244_Y	247_G	0.834	0.95
218_A	229_K	0.822	0.94
14_L	102_V	0.821	0.94
26_L	170_R	0.820	0.94
181_V	184_A	0.805	0.94
183_P	188_I	0.805	0.94
126_Q	141_Q	0.802	0.94
72_E	77_S	0.800	0.94
184_A	190_R	0.798	0.93
244_Y	252_Y	0.794	0.93
163_N	167_K	0.787	0.93
26_L	177_L	0.787	0.93
19_L	141_Q	0.786	0.93
231_P	236_A	0.780	0.93
116_I	252_Y	0.779	0.93
72_E	76_V	0.779	0.93
57_V	257_S	0.779	0.93
4_K	140_I	0.778	0.93
222_G	227_S	0.777	0.93
196_K	200_I	0.776	0.92
72_E	94_L	0.775	0.92
224_F	227_S	0.771	0.92
181_V	189_N	0.768	0.92
226_K	229_K	0.767	0.92
123_H	127_T	0.767	0.92
72_E	79_T	0.767	0.92
102_V	149_I	0.762	0.92
91_M	102_V	0.759	0.92
5_V	105_V	0.758	0.92
171_G	176_L	0.748	0.91
250_A	254_L	0.740	0.91
177_L	183_P	0.738	0.90
93_S	97_G	0.737	0.90
76_V	84_T	0.736	0.90
6_I	10_K	0.736	0.90
60_A	64_Y	0.734	0.90
42_N	97_G	0.730	0.90
169_I	182_K	0.727	0.90
88_R	92_K	0.726	0.90
44_L	87_L	0.726	0.90
173_N	183_P	0.722	0.90
184_A	240_V	0.715	0.89
72_E	75_Y	0.713	0.89
252_Y	255_P	0.710	0.89
16_V	115_V	0.710	0.89
83_G	90_T	0.707	0.89
185_L	211_Y	0.705	0.88
36_I	43_I	0.701	0.88
29_S	154_T	0.701	0.88
91_M	149_I	0.698	0.88
26_L	167_K	0.697	0.88
214_L	218_A	0.693	0.88
185_L	214_L	0.690	0.87
218_A	224_F	0.688	0.87
125_A	154_T	0.687	0.87
213_L	222_G	0.683	0.87
68_E	71_I	0.682	0.87
50_G	78_A	0.679	0.86
40_Y	97_G	0.678	0.86
222_G	229_K	0.677	0.86
241_I	244_Y	0.676	0.86
53_V	253_T	0.675	0.86
182_K	188_I	0.674	0.86
32_I	105_V	0.673	0.86
73_S	76_V	0.673	0.86
219_I	222_G	0.670	0.86
83_G	86_I	0.668	0.86
89_D	93_S	0.666	0.85
48_N	145_I	0.666	0.85
79_T	118_A	0.666	0.85
14_L	91_M	0.665	0.85
130_H	142_L	0.661	0.85
165_L	168_T	0.660	0.85
48_N	76_V	0.655	0.84
253_T	257_S	0.655	0.84
95_L	101_I	0.654	0.84
8_L	103_V	0.653	0.84
54_P	57_V	0.652	0.84
50_G	58_L	0.651	0.84
202_V	205_V	0.651	0.84
200_I	206_D	0.645	0.84
149_I	210_P	0.644	0.83
210_P	213_L	0.642	0.83
76_V	87_L	0.634	0.83
158_I	175_D	0.630	0.82
21_A	47_L	0.628	0.82
208_N	213_L	0.627	0.82
214_L	233_I	0.627	0.82
217_I	239_A	0.625	0.82
76_V	79_T	0.624	0.82
137_T	155_P	0.624	0.82
36_I	105_V	0.622	0.81
86_I	90_T	0.622	0.81
201_S	204_K	0.621	0.81
145_I	151_A	0.621	0.81
56_W	59_K	0.621	0.81
108_P	135_G	0.619	0.81
208_N	212_E	0.613	0.80
71_I	74_V	0.612	0.80
137_T	153_D	0.610	0.80
117_N	153_D	0.610	0.80
55_L	60_A	0.609	0.80
188_I	210_P	0.609	0.80
128_S	160_P	0.607	0.80
183_P	187_L	0.606	0.80
111_G	117_N	0.606	0.80
61_W	65_F	0.602	0.79
90_T	94_L	0.600	0.79
28_R	32_I	0.596	0.78
111_G	153_D	0.596	0.78
64_Y	67_T	0.595	0.78
13_D	41_K	0.594	0.78
215_E	218_A	0.592	0.78
182_K	187_L	0.592	0.78
124_S	143_F	0.590	0.78
171_G	245_H	0.590	0.78
221_R	227_S	0.589	0.78
5_V	241_I	0.587	0.77
197_E	206_D	0.584	0.77
91_M	101_I	0.579	0.76
225_Y	229_K	0.578	0.76
188_I	240_V	0.577	0.76
213_L	240_V	0.576	0.76
116_I	143_F	0.575	0.76
75_Y	78_A	0.575	0.76
214_L	222_G	0.575	0.76
79_T	83_G	0.568	0.75
58_L	251_Y	0.568	0.75
32_I	157_V	0.568	0.75
61_W	255_P	0.568	0.75
158_I	161_D	0.564	0.75
83_G	87_L	0.564	0.75
113_S	117_N	0.561	0.74
153_D	156_G	0.559	0.74
151_A	203_Y	0.558	0.74
172_Y	183_P	0.552	0.73
71_I	76_V	0.550	0.73
47_L	75_Y	0.550	0.73
100_G	150_Y	0.550	0.73
200_I	203_Y	0.550	0.73
31_K	157_V	0.550	0.73
164_E	171_G	0.549	0.73
202_V	243_D	0.549	0.73
59_K	147_N	0.548	0.73
14_L	44_L	0.545	0.72
89_D	92_K	0.545	0.72
211_Y	216_R	0.545	0.72
184_A	191_V	0.544	0.72
75_Y	79_T	0.540	0.71
11_R	150_Y	0.533	0.70
30_K	159_P	0.532	0.70
37_V	42_N	0.531	0.70
121_G	139_S	0.524	0.69
217_I	231_P	0.522	0.69
250_A	255_P	0.520	0.69
80_S	86_I	0.520	0.69
29_S	159_P	0.519	0.68
25_S	28_R	0.518	0.68
48_N	244_Y	0.517	0.68
206_D	210_P	0.517	0.68
184_A	241_I	0.516	0.68
173_N	176_L	0.516	0.68
23_E	26_L	0.516	0.68
208_N	211_Y	0.515	0.68
19_L	43_I	0.514	0.68
218_A	227_S	0.514	0.68
88_R	149_I	0.513	0.68
119_L	145_I	0.513	0.68
21_A	53_V	0.512	0.67
84_T	118_A	0.511	0.67
104_F	235_M	0.511	0.67
25_S	64_Y	0.511	0.67
204_K	220_R	0.508	0.67
208_N	216_R	0.507	0.67
197_E	204_K	0.507	0.67
14_L	101_I	0.507	0.67
59_K	62_K	0.506	0.67
198_S	203_Y	0.505	0.66
104_F	116_I	0.504	0.66
6_I	139_S	0.502	0.66
40_Y	233_I	0.500	0.66

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1pujA	1	0.8951	100	0.319	Contact Map
3cnlA	1	0.8652	100	0.477	Contact Map
2yv5A	1	0.7715	100	0.617	Contact Map
3h2yA	1	0.9101	100	0.626	Contact Map
3ec1A	1	0.97	99.9	0.629	Contact Map
1t9hA	1	0.7154	99.9	0.638	Contact Map
1u0lA	1	0.7266	99.9	0.644	Contact Map
2rcnA	2	0.7004	99.9	0.647	Contact Map
1mkyA	1	0.8727	99.9	0.653	Contact Map
4dcuA	1	0.9064	99.9	0.66	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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