Q7LXN5 - SULSO - GREMLIN Contacts

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Q7LXN5 - Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB)

UniProt:	Q7LXN5	Sequences: MACIFHIIGKKDTGKTSVIESVLREIKKDNLKVAVVKHSHHKLDLAGKDTYRYRNSGSDLILFQEGEEESVLFMPSVSSLTLITLLPVDVILVEGFSNVDIGKKYIINNVNEVEAISKQVINDIKKECQKTNRALILDNVKVEVTSDNALLLTLYNLMKVLGVKNVSSD	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	169 (152)
Sequences:	1390 (1018)
Seq/√Len:	82.6

ECOLI - MOBB
BACSU - MOBB
HALSA - Q9HR77
SULSO - Q7LXN5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
20_E	52_R	6.155	1.00
35_V	53_Y	4.343	1.00
11_K	48_K	3.775	1.00
27_K	59_D	3.559	1.00
146_S	149_A	3.499	1.00
34_A	88_V	3.194	1.00
29_D	152_L	3.044	1.00
9_G	13_T	2.779	1.00
69_E	75_P	2.509	1.00
34_A	86_L	2.466	1.00
25_E	29_D	2.336	1.00
6_H	101_I	2.287	1.00
25_E	148_N	2.274	1.00
19_I	53_Y	2.255	1.00
23_L	35_V	2.134	1.00
51_Y	55_N	1.994	1.00
4_I	83_I	1.915	1.00
29_D	155_Y	1.861	1.00
68_E	74_M	1.810	1.00
31_L	155_Y	1.805	1.00
93_V	101_I	1.797	1.00
22_V	150_L	1.781	1.00
71_V	75_P	1.707	1.00
6_H	93_V	1.681	1.00
25_E	151_L	1.677	1.00
70_S	74_M	1.610	1.00
25_E	147_D	1.605	1.00
44_D	47_G	1.519	0.99
78_S	81_T	1.516	0.99
108_N	144_V	1.495	0.99
69_E	73_F	1.470	0.99
109_N	130_K	1.458	0.99
44_D	51_Y	1.440	0.99
142_V	153_T	1.439	0.99
70_S	75_P	1.419	0.99
50_T	63_F	1.410	0.99
83_I	91_I	1.390	0.99
18_V	150_L	1.374	0.99
104_K	125_K	1.369	0.99
25_E	28_K	1.349	0.99
17_S	147_D	1.339	0.99
22_V	151_L	1.316	0.98
54_R	74_M	1.309	0.98
105_Y	117_S	1.295	0.98
96_F	99_V	1.284	0.98
36_V	91_I	1.277	0.98
13_T	106_I	1.246	0.98
36_V	79_S	1.236	0.98
19_I	24_R	1.234	0.98
129_Q	145_T	1.218	0.97
62_L	82_L	1.205	0.97
66_G	76_S	1.204	0.97
140_V	153_T	1.203	0.97
97_S	103_K	1.198	0.97
143_E	146_S	1.173	0.97
60_L	74_M	1.171	0.97
7_I	22_V	1.143	0.96
60_L	87_P	1.084	0.95
33_V	90_V	1.064	0.94
35_V	58_S	1.057	0.94
19_I	23_L	1.057	0.94
39_S	65_E	1.051	0.94
19_I	92_L	1.047	0.94
10_K	97_S	1.034	0.94
5_F	104_K	1.023	0.93
148_N	152_L	1.019	0.93
64_Q	82_L	1.014	0.93
5_F	92_L	1.000	0.92
5_F	157_L	0.970	0.91
152_L	156_N	0.950	0.90
20_E	55_N	0.947	0.90
31_L	90_V	0.945	0.90
12_D	48_K	0.942	0.90
107_I	115_A	0.941	0.90
105_Y	118_K	0.938	0.90
39_S	53_Y	0.937	0.90
137_L	141_K	0.934	0.90
25_E	152_L	0.923	0.89
7_I	104_K	0.918	0.89
26_I	155_Y	0.914	0.89
20_E	56_S	0.898	0.88
127_E	144_V	0.898	0.88
43_L	72_L	0.887	0.87
115_A	126_K	0.883	0.87
132_N	141_K	0.880	0.87
9_G	61_I	0.879	0.87
105_Y	123_D	0.877	0.86
125_K	128_C	0.876	0.86
21_S	147_D	0.856	0.85
34_A	53_Y	0.848	0.84
142_V	150_L	0.843	0.84
4_I	101_I	0.838	0.84
5_F	154_L	0.832	0.83
9_G	106_I	0.831	0.83
69_E	72_L	0.830	0.83
4_I	91_I	0.827	0.83
47_G	51_Y	0.826	0.83
39_S	66_G	0.822	0.83
147_D	150_L	0.821	0.83
26_I	92_L	0.814	0.82
9_G	95_G	0.812	0.82
70_S	73_F	0.809	0.82
143_E	149_A	0.806	0.81
22_V	26_I	0.806	0.81
9_G	53_Y	0.792	0.80
40_H	64_Q	0.790	0.80
72_L	75_P	0.781	0.79
136_I	156_N	0.772	0.79
128_C	131_T	0.769	0.78
38_H	65_E	0.767	0.78
82_L	96_F	0.763	0.78
42_K	68_E	0.760	0.77
40_H	50_T	0.760	0.77
79_S	99_V	0.760	0.77
60_L	85_L	0.759	0.77
142_V	147_D	0.754	0.77
138_D	141_K	0.746	0.76
10_K	103_K	0.740	0.76
9_G	14_G	0.736	0.75
18_V	104_K	0.732	0.75
124_I	157_L	0.730	0.75
26_I	151_L	0.726	0.74
84_T	158_M	0.723	0.74
107_I	130_K	0.723	0.74
81_T	84_T	0.722	0.74
9_G	15_K	0.719	0.73
149_A	152_L	0.719	0.73
154_L	158_M	0.718	0.73
46_A	55_N	0.718	0.73
53_Y	56_S	0.716	0.73
43_L	70_S	0.708	0.72
50_T	53_Y	0.707	0.72
98_N	120_V	0.705	0.72
128_C	132_N	0.704	0.72
104_K	127_E	0.702	0.72
65_E	68_E	0.693	0.71
31_L	89_D	0.691	0.70
137_L	140_V	0.690	0.70
42_K	66_G	0.684	0.70
23_L	53_Y	0.683	0.70
44_D	48_K	0.682	0.69
38_H	95_G	0.680	0.69
6_H	123_D	0.675	0.69
44_D	70_S	0.675	0.69
71_V	74_M	0.671	0.68
40_H	43_L	0.671	0.68
38_H	103_K	0.670	0.68
22_V	147_D	0.664	0.67
10_K	115_A	0.662	0.67
24_R	27_K	0.662	0.67
39_S	63_F	0.661	0.67
80_L	99_V	0.659	0.67
136_I	140_V	0.659	0.67
39_S	73_F	0.656	0.66
38_H	41_H	0.655	0.66
45_L	51_Y	0.650	0.66
36_V	82_L	0.640	0.65
32_K	59_D	0.638	0.64
105_Y	119_Q	0.636	0.64
39_S	42_K	0.631	0.63
12_D	19_I	0.631	0.63
142_V	157_L	0.629	0.63
97_S	102_G	0.628	0.63
38_H	49_D	0.616	0.62
68_E	73_F	0.613	0.61
17_S	26_I	0.611	0.61
79_S	116_I	0.607	0.60
11_K	19_I	0.606	0.60
38_H	97_S	0.605	0.60
3_C	34_A	0.603	0.60
3_C	91_I	0.596	0.59
63_F	68_E	0.596	0.59
64_Q	76_S	0.591	0.58
84_T	156_N	0.590	0.58
49_D	97_S	0.587	0.58
107_I	112_E	0.587	0.58
18_V	127_E	0.586	0.58
6_H	40_H	0.584	0.58
147_D	151_L	0.580	0.57
62_L	71_V	0.580	0.57
86_L	91_I	0.579	0.57
8_I	105_Y	0.577	0.57
98_N	116_I	0.576	0.57
60_L	88_V	0.576	0.57
50_T	61_I	0.576	0.57
68_E	72_L	0.575	0.56
42_K	98_N	0.568	0.55
55_N	61_I	0.567	0.55
52_R	55_N	0.567	0.55
11_K	106_I	0.565	0.55
24_R	35_V	0.564	0.55
105_Y	111_N	0.564	0.55
34_A	62_L	0.562	0.55
34_A	60_L	0.556	0.54
6_H	99_V	0.552	0.53
93_V	96_F	0.550	0.53
62_L	86_L	0.548	0.53
80_L	100_D	0.546	0.53
84_T	110_V	0.546	0.53
127_E	142_V	0.546	0.53
25_E	146_S	0.544	0.52
137_L	148_N	0.542	0.52
3_C	13_T	0.541	0.52
39_S	97_S	0.540	0.52
3_C	90_V	0.537	0.51
138_D	156_N	0.536	0.51
52_R	56_S	0.535	0.51
44_D	91_I	0.532	0.51
43_L	73_F	0.531	0.51
76_S	109_N	0.530	0.50
78_S	99_V	0.526	0.50
9_G	16_T	0.523	0.50
39_S	69_E	0.523	0.50
62_L	77_V	0.522	0.49
35_V	101_I	0.522	0.49
29_D	151_L	0.518	0.49
47_G	58_S	0.515	0.49
44_D	63_F	0.515	0.49
5_F	19_I	0.514	0.48
81_T	85_L	0.513	0.48
64_Q	93_V	0.512	0.48
41_H	49_D	0.505	0.47
108_N	129_Q	0.505	0.47
119_Q	156_N	0.505	0.47
23_L	61_I	0.504	0.47
17_S	21_S	0.504	0.47
114_E	117_S	0.502	0.47
30_N	155_Y	0.500	0.47

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4nkrA	2	0.929	100	0.405	Contact Map
1xjcA	2	0.8343	100	0.443	Contact Map
1np6A	2	0.9467	99.8	0.643	Contact Map
2f1rA	2	0.8521	99.6	0.698	Contact Map
4ehxA	1	0.8047	99.3	0.756	Contact Map
2wsmA	2	0.8935	99	0.784	Contact Map
2hf9A	2	0.8994	98.7	0.802	Contact Map
3fgnA	2	0.8876	98.6	0.813	Contact Map
4a0gA	2	0.929	98.4	0.819	Contact Map
1s1mA	4	0.9704	98.3	0.829	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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