Q7LXG6 - SULSO - GREMLIN Contacts

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Q7LXG6 - Uncharacterized protein

UniProt:	Q7LXG6	Sequences: MFSIQIPALHGKYLREVLESIREQTFQDYEVVVVNSGGGVISDIVHEYGFKEVRKDVKLLEARYLANKESRGDYAFLLDETRPLRKDALEILSKNLHDMVIIGERELGDSFWSRAAQLDKENIMECNSPEAVRGFALPRLFKRELLTASLEKLRENLREKFSQVVFPDHELIYYEASGFSNDIFVIKDELVYHYGDFTLKEIVRKYYRYGKSLKVLKDTPYSFMTSVSRKRREICVGGIKGRLTLYILYLARGIPFLFGKFSL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	263 (213)
Sequences:	27114 (23822)
Seq/√Len:	1632.3

ECOLI - YIBD WCAE WCAA WBBL GTRB ARNC PGAC YAIP
BACSU - CGED GGAA EPSJ EPSH EPSE GGAB YFNE YWDF SPSA TUAG YKCC TAGF CSBB YKOT YDAM
HALSA - Q9HQP4 Q9HQP8 Q9HSC8 Q9HQP3 Q9HNK3 Q9HR08 Q9HQQ6
SULSO - Q7LXG6 Q97X05 Q7LXF7 Q97YG5 Q97TY0 Q97TZ0 Q97W52 Q97WK7 Q7LXY2 Q97UK7 Q97YN4 Q97YM4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
143_R	147_T	3.511	1.00
11_G	40_V	2.909	1.00
91_I	188_D	2.750	1.00
65_L	69_E	2.618	1.00
8_A	41_I	2.496	1.00
171_L	175_E	2.494	1.00
68_K	152_K	2.459	1.00
85_R	192_Y	2.384	1.00
25_T	90_E	2.376	1.00
16_E	194_Y	2.279	1.00
57_V	61_E	2.270	1.00
42_S	46_H	2.217	1.00
49_G	52_E	2.200	1.00
15_R	19_E	2.143	1.00
34_V	66_A	2.127	1.00
3_S	72_G	2.101	1.00
6_I	31_V	2.098	1.00
61_E	155_E	2.010	1.00
5_Q	66_A	2.004	1.00
95_N	186_I	1.954	1.00
16_E	83_P	1.943	1.00
40_V	43_D	1.913	1.00
11_G	44_I	1.911	1.00
84_L	88_A	1.892	1.00
76_F	140_L	1.882	1.00
92_L	140_L	1.872	1.00
2_F	93_S	1.857	1.00
63_R	79_D	1.828	1.00
97_H	184_F	1.817	1.00
15_R	48_Y	1.809	1.00
95_N	184_F	1.805	1.00
6_I	17_V	1.774	1.00
87_D	91_I	1.731	1.00
33_V	45_V	1.719	1.00
88_A	92_L	1.716	1.00
26_F	93_S	1.707	1.00
10_H	38_G	1.685	1.00
54_R	65_L	1.668	1.00
145_L	181_N	1.651	1.00
76_F	89_L	1.626	1.00
60_L	168_D	1.611	1.00
105_R	192_Y	1.610	1.00
65_L	68_K	1.598	1.00
76_F	88_A	1.590	1.00
83_P	192_Y	1.587	1.00
19_E	23_E	1.583	1.00
15_R	47_E	1.582	1.00
59_L	63_R	1.577	1.00
74_Y	140_L	1.574	1.00
2_F	89_L	1.526	1.00
30_E	72_G	1.513	1.00
78_L	84_L	1.506	1.00
8_A	80_E	1.498	1.00
8_A	33_V	1.495	1.00
15_R	44_I	1.469	1.00
154_R	171_L	1.465	1.00
19_E	48_Y	1.436	1.00
26_F	29_Y	1.432	1.00
9_L	56_D	1.401	1.00
148_A	179_F	1.394	1.00
91_I	94_K	1.393	1.00
90_E	94_K	1.392	1.00
67_N	146_L	1.374	1.00
53_V	69_E	1.373	1.00
20_S	84_L	1.365	1.00
75_A	143_R	1.355	1.00
144_E	148_A	1.352	1.00
54_R	57_V	1.347	1.00
145_L	176_A	1.347	1.00
70_S	143_R	1.336	1.00
44_I	48_Y	1.334	1.00
18_L	31_V	1.327	1.00
59_L	168_D	1.319	1.00
83_P	194_Y	1.311	1.00
98_D	182_D	1.308	1.00
36_S	56_D	1.301	1.00
73_D	142_K	1.298	1.00
17_V	78_L	1.292	1.00
53_V	65_L	1.290	1.00
3_S	30_E	1.280	1.00
98_D	142_K	1.280	1.00
63_R	77_L	1.274	1.00
2_F	140_L	1.242	1.00
139_R	173_Y	1.239	1.00
67_N	77_L	1.230	1.00
30_E	51_K	1.215	1.00
34_V	62_A	1.192	1.00
76_F	84_L	1.180	1.00
195_G	198_T	1.171	1.00
30_E	71_R	1.169	1.00
87_D	90_E	1.157	1.00
23_E	86_K	1.153	1.00
92_L	102_I	1.144	1.00
54_R	61_E	1.144	1.00
144_E	147_T	1.141	1.00
35_N	42_S	1.079	1.00
43_D	46_H	1.073	1.00
196_D	199_L	1.072	1.00
142_K	145_L	1.063	1.00
10_H	37_G	1.058	1.00
148_A	181_N	1.047	1.00
91_I	186_I	1.046	1.00
146_L	172_I	1.033	1.00
67_N	75_A	1.030	1.00
25_T	87_D	1.030	1.00
7_P	62_A	1.020	1.00
105_R	189_E	1.020	1.00
19_E	22_R	1.020	1.00
21_I	78_L	1.018	1.00
36_S	62_A	1.016	1.00
13_Y	194_Y	1.016	1.00
18_L	48_Y	1.015	1.00
61_E	65_L	1.014	1.00
107_L	192_Y	0.995	1.00
3_S	70_S	0.993	1.00
57_V	62_A	0.986	1.00
29_Y	89_L	0.984	1.00
74_Y	93_S	0.964	1.00
195_G	199_L	0.959	1.00
63_R	168_D	0.953	1.00
145_L	180_S	0.947	1.00
91_I	95_N	0.937	1.00
88_A	190_L	0.930	1.00
20_S	83_P	0.926	1.00
8_A	45_V	0.925	1.00
42_S	52_E	0.912	1.00
59_L	136_A	0.909	1.00
3_S	32_V	0.905	1.00
149_S	179_F	0.903	1.00
51_K	69_E	0.899	1.00
40_V	44_I	0.898	1.00
6_I	21_I	0.894	1.00
8_A	14_L	0.886	1.00
149_S	152_K	0.884	1.00
88_A	102_I	0.883	1.00
59_L	199_L	0.882	1.00
60_L	64_Y	0.874	1.00
22_R	48_Y	0.872	1.00
18_L	33_V	0.871	1.00
137_L	191_V	0.864	1.00
136_A	153_L	0.861	1.00
97_H	100_V	0.850	1.00
36_S	57_V	0.846	1.00
44_I	47_E	0.844	1.00
17_V	20_S	0.843	1.00
36_S	58_K	0.841	1.00
7_P	80_E	0.838	1.00
67_N	70_S	0.837	1.00
141_F	173_Y	0.832	1.00
25_T	86_K	0.830	1.00
21_I	84_L	0.825	1.00
83_P	107_L	0.821	1.00
11_G	15_R	0.819	1.00
59_L	79_D	0.819	1.00
208_R	212_S	0.818	1.00
149_S	176_A	0.817	1.00
96_L	182_D	0.817	1.00
21_I	31_V	0.816	1.00
59_L	62_A	0.812	1.00
99_M	183_I	0.811	1.00
4_I	89_L	0.808	1.00
77_L	153_L	0.808	1.00
10_H	35_N	0.808	1.00
104_E	137_L	0.807	1.00
103_G	185_V	0.805	1.00
34_V	65_L	0.805	1.00
26_F	89_L	0.802	1.00
4_I	21_I	0.801	1.00
22_R	49_G	0.794	1.00
85_R	190_L	0.792	1.00
14_L	80_E	0.789	1.00
211_K	215_V	0.787	1.00
98_D	181_N	0.783	1.00
18_L	22_R	0.783	1.00
43_D	47_E	0.783	1.00
85_R	88_A	0.782	1.00
32_V	69_E	0.775	1.00
42_S	45_V	0.775	1.00
145_L	149_S	0.772	1.00
32_V	66_A	0.769	1.00
4_I	76_F	0.764	1.00
17_V	21_I	0.758	1.00
64_Y	152_K	0.757	1.00
101_I	104_E	0.753	1.00
67_N	152_K	0.751	1.00
100_V	103_G	0.747	1.00
136_A	139_R	0.746	1.00
62_A	65_L	0.746	1.00
154_R	175_E	0.745	1.00
57_V	65_L	0.742	1.00
92_L	100_V	0.741	1.00
118_L	123_I	0.734	1.00
93_S	140_L	0.725	1.00
85_R	105_R	0.721	1.00
76_F	138_P	0.721	1.00
102_I	190_L	0.717	1.00
32_V	70_S	0.717	1.00
172_I	176_A	0.714	1.00
26_F	90_E	0.714	1.00
22_R	50_F	0.713	1.00
16_E	19_E	0.708	1.00
186_I	189_E	0.707	1.00
214_K	218_D	0.702	1.00
38_G	41_I	0.700	1.00
104_E	138_P	0.691	1.00
7_P	63_R	0.690	1.00
82_R	193_H	0.689	1.00
141_F	172_I	0.685	1.00
97_H	102_I	0.683	1.00
11_G	41_I	0.682	1.00
8_A	35_N	0.680	1.00
152_K	172_I	0.680	1.00
24_Q	90_E	0.679	1.00
64_Y	153_L	0.678	1.00
101_I	183_I	0.677	1.00
70_S	75_A	0.676	1.00
73_D	144_E	0.669	1.00
145_L	148_A	0.667	1.00
88_A	138_P	0.663	1.00
31_V	50_F	0.662	1.00
125_E	128_S	0.658	1.00
91_I	190_L	0.655	1.00
146_L	152_K	0.654	1.00
198_T	201_E	0.650	1.00
11_G	14_L	0.649	1.00
17_V	81_T	0.647	1.00
167_P	170_E	0.644	1.00
122_N	125_E	0.643	1.00
84_L	89_L	0.643	1.00
2_F	76_F	0.639	1.00
212_S	215_V	0.639	1.00
130_E	182_D	0.635	1.00
119_D	122_N	0.634	1.00
4_I	29_Y	0.629	1.00
79_D	168_D	0.629	1.00
22_R	31_V	0.628	1.00
64_Y	155_E	0.626	1.00
116_A	119_D	0.626	1.00
177_S	183_I	0.625	1.00
14_L	44_I	0.624	1.00
74_Y	142_K	0.624	1.00
99_M	176_A	0.619	1.00
134_G	173_Y	0.617	1.00
110_S	113_S	0.616	1.00
14_L	45_V	0.616	1.00
210_G	213_L	0.613	1.00
103_G	187_K	0.613	1.00
195_G	200_K	0.610	1.00
211_K	214_K	0.606	1.00
207_Y	211_K	0.606	1.00
9_L	36_S	0.603	1.00
6_I	33_V	0.602	1.00
24_Q	89_L	0.600	1.00
119_D	124_M	0.599	1.00
170_E	174_Y	0.599	1.00
97_H	101_I	0.593	1.00
78_L	191_V	0.592	1.00
123_I	126_C	0.592	1.00
54_R	62_A	0.591	1.00
78_L	82_R	0.590	1.00
116_A	120_K	0.586	1.00
84_L	191_V	0.585	1.00
11_G	43_D	0.585	1.00
7_P	36_S	0.584	1.00
134_G	139_R	0.584	1.00
24_Q	84_L	0.580	1.00
108_G	111_F	0.576	1.00
141_F	146_L	0.575	1.00
176_A	181_N	0.574	1.00
5_Q	34_V	0.572	1.00
147_T	152_K	0.568	1.00
121_E	124_M	0.568	1.00
14_L	41_I	0.566	1.00
213_L	217_K	0.566	1.00
21_I	24_Q	0.566	1.00
164_V	167_P	0.563	1.00
176_A	180_S	0.561	1.00
98_D	180_S	0.560	1.00
6_I	18_L	0.559	1.00
36_S	79_D	0.559	1.00
103_G	189_E	0.558	1.00
59_L	77_L	0.551	1.00
17_V	80_E	0.549	1.00
101_I	185_V	0.548	1.00
51_K	71_R	0.547	1.00
101_I	139_R	0.545	1.00
100_V	181_N	0.544	1.00
5_Q	70_S	0.542	1.00
35_N	56_D	0.541	1.00
204_R	208_R	0.540	1.00
7_P	59_L	0.540	1.00
97_H	104_E	0.539	1.00
137_L	193_H	0.539	1.00
210_G	214_K	0.538	1.00
209_Y	213_L	0.537	1.00
115_A	118_L	0.536	1.00
189_E	192_Y	0.534	1.00
108_G	113_S	0.532	1.00
5_Q	63_R	0.531	1.00
141_F	176_A	0.529	1.00
213_L	216_L	0.529	1.00
82_R	191_V	0.528	1.00
6_I	80_E	0.526	1.00
10_H	41_I	0.524	1.00
29_Y	72_G	0.519	1.00
5_Q	77_L	0.517	1.00
129_P	132_V	0.515	1.00
17_V	82_R	0.515	1.00
13_Y	17_V	0.514	1.00
92_L	138_P	0.513	1.00
62_A	79_D	0.512	1.00
64_Y	68_K	0.512	1.00
56_D	62_A	0.511	1.00
11_G	80_E	0.509	1.00
87_D	188_D	0.509	1.00
17_V	84_L	0.507	1.00
25_T	29_Y	0.506	1.00
208_R	211_K	0.504	1.00
13_Y	195_G	0.501	1.00
117_Q	122_N	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l7iA	4	0	100	0.363	Contact Map
3bcvA	2	0.616	100	0.375	Contact Map
1qg8A	1	0.8023	100	0.385	Contact Map
2z86A	2	0.8897	100	0.399	Contact Map
2d7iA	1	0.9316	100	0.408	Contact Map
1xhbA	1	0.9049	100	0.418	Contact Map
5ajoA	1	0.9278	100	0.435	Contact Map
4fixA	3	0.9696	100	0.462	Contact Map
2bo4A	4	0.962	100	0.467	Contact Map
4p02A	1	0.9544	100	0.468	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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