Q7LXG3 - SULSO - GREMLIN Contacts

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Q7LXG3 - UTP-glucose-1-phosphate uridylyltransferase

UniProt:	Q7LXG3	Sequences: MGTRLLPASKEIPKEMFPIPFNGQFKPIIQIIFEQLYDIGIRDFVIVVGRGKRVIEDHFTPDYDFINYLEAKGKVIQANYLRQFYQKVENSRIAFVNQPEPKGFGDAVLRAEPFIQGEFLVVAADTILPMIPISSMVVNSFLVTTVQDPRPYGVVLVDKQGCVIDIEEKPKQPKSNLVVVPYYMFDEEIFDELRQIKYEEELQLTDGIKGLIKRGRRFKAIMVDKVYDLGTVENYIESLRRLLNND	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	246 (213)
Sequences:	17810 (10618)
Seq/√Len:	727.5

ECOLI - RMLA1 GALU RMLA2 GALF GLMU GLGC
BACSU - YNGB YTDA GTAB RMLA RFBF GLMU GLGC GLGD
HALSA - Q9HQQ4 Q9HSV0 Q9HSZ9 Q9HSZ8 Q9HSW4 Q9HS61
SULSO - Q7LXG3 Q7LXE7 Q97VX4 Q97U06 Q97XG0 Q97ZD1 Q980H9 Q7LXK9 Q980D4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
112_E	194_R	3.322	1.00
26_K	34_E	2.940	1.00
43_D	92_R	2.864	1.00
102_K	106_D	2.724	1.00
145_T	176_N	2.643	1.00
192_E	214_R	2.464	1.00
192_E	210_G	2.343	1.00
158_D	162_C	2.342	1.00
30_Q	58_H	2.178	1.00
156_L	165_D	2.127	1.00
140_S	218_F	2.108	1.00
162_C	218_F	2.020	1.00
210_G	214_R	2.016	1.00
158_D	164_I	2.005	1.00
30_Q	34_E	1.954	1.00
96_V	110_R	1.925	1.00
210_G	213_K	1.911	1.00
109_L	112_E	1.885	1.00
165_D	209_K	1.885	1.00
169_K	173_P	1.878	1.00
177_L	221_I	1.873	1.00
136_M	220_A	1.848	1.00
145_T	221_I	1.820	1.00
156_L	164_I	1.814	1.00
12_I	18_P	1.799	1.00
6_L	10_K	1.797	1.00
148_D	151_P	1.783	1.00
33_F	44_F	1.781	1.00
209_K	213_K	1.772	1.00
157_V	177_L	1.746	1.00
53_R	57_D	1.707	1.00
45_V	114_F	1.697	1.00
36_L	122_V	1.668	1.00
56_E	97_N	1.657	1.00
48_V	52_K	1.654	1.00
136_M	140_S	1.650	1.00
163_V	219_K	1.644	1.00
37_Y	91_S	1.640	1.00
44_F	91_S	1.638	1.00
143_V	219_K	1.635	1.00
43_D	94_A	1.616	1.00
131_I	135_S	1.605	1.00
108_V	121_V	1.565	1.00
106_D	110_R	1.540	1.00
45_V	96_V	1.518	1.00
52_K	97_N	1.515	1.00
192_E	207_G	1.485	1.00
16_M	54_V	1.463	1.00
235_Y	239_L	1.463	1.00
206_D	209_K	1.447	1.00
45_V	111_A	1.446	1.00
54_V	57_D	1.430	1.00
167_E	174_K	1.429	1.00
142_L	145_T	1.427	1.00
195_Q	210_G	1.424	1.00
48_V	95_F	1.396	1.00
109_L	194_R	1.379	1.00
143_V	146_V	1.366	1.00
119_F	187_E	1.360	1.00
225_K	241_R	1.345	1.00
12_I	54_V	1.340	1.00
132_P	135_S	1.317	1.00
231_T	234_N	1.314	1.00
135_S	139_N	1.313	1.00
155_V	163_V	1.313	1.00
133_I	184_M	1.310	1.00
16_M	58_H	1.301	1.00
106_D	109_L	1.295	1.00
41_I	120_L	1.295	1.00
185_F	208_I	1.294	1.00
29_I	59_F	1.292	1.00
123_A	181_P	1.292	1.00
156_L	167_E	1.289	1.00
48_V	56_E	1.289	1.00
51_G	54_V	1.287	1.00
94_A	114_F	1.258	1.00
29_I	46_I	1.258	1.00
156_L	175_S	1.254	1.00
52_K	56_E	1.244	1.00
227_Y	241_R	1.227	1.00
48_V	97_N	1.220	1.00
188_E	216_R	1.219	1.00
150_R	169_K	1.211	1.00
188_E	191_D	1.209	1.00
227_Y	237_E	1.206	1.00
205_T	209_K	1.202	1.00
236_I	240_R	1.195	1.00
132_P	136_M	1.177	1.00
137_V	141_F	1.173	1.00
234_N	237_E	1.166	1.00
27_P	30_Q	1.164	1.00
20_P	25_F	1.159	1.00
28_I	229_L	1.156	1.00
236_I	239_L	1.156	1.00
29_I	55_I	1.143	1.00
118_E	186_D	1.141	1.00
195_Q	214_R	1.127	1.00
41_I	134_S	1.126	1.00
179_V	183_Y	1.122	1.00
5_L	17_F	1.097	1.00
208_I	217_R	1.084	1.00
153_G	168_E	1.082	1.00
157_V	219_K	1.073	1.00
136_M	218_F	1.064	1.00
115_I	119_F	1.058	1.00
60_T	95_F	1.054	1.00
229_L	238_S	1.045	1.00
121_V	185_F	1.043	1.00
137_V	186_D	1.042	1.00
142_L	146_V	1.036	1.00
112_E	190_F	1.036	1.00
5_L	9_S	1.010	1.00
163_V	217_R	1.009	1.00
39_I	131_I	1.009	1.00
120_L	134_S	0.997	1.00
135_S	138_V	0.991	1.00
120_L	184_M	0.987	1.00
161_G	221_I	0.986	1.00
118_E	187_E	0.984	1.00
117_G	187_E	0.982	1.00
237_E	240_R	0.979	1.00
20_P	239_L	0.969	1.00
49_G	52_K	0.969	1.00
165_D	172_Q	0.965	1.00
30_Q	62_D	0.959	1.00
188_E	192_E	0.959	1.00
191_D	195_Q	0.959	1.00
137_V	184_M	0.959	1.00
53_R	56_E	0.951	1.00
211_L	216_R	0.948	1.00
26_K	30_Q	0.945	1.00
191_D	194_R	0.940	1.00
45_V	94_A	0.934	1.00
109_L	193_L	0.929	1.00
26_K	31_I	0.923	1.00
143_V	155_V	0.921	1.00
192_E	195_Q	0.913	1.00
151_P	169_K	0.910	1.00
36_L	41_I	0.908	1.00
116_Q	187_E	0.907	1.00
137_V	140_S	0.904	1.00
136_M	139_N	0.895	1.00
64_D	89_E	0.893	1.00
42_R	92_R	0.891	1.00
154_V	178_V	0.890	1.00
33_F	93_I	0.879	1.00
15_E	124_A	0.878	1.00
150_R	171_K	0.878	1.00
9_S	17_F	0.877	1.00
233_E	237_E	0.868	1.00
59_F	93_I	0.865	1.00
151_P	234_N	0.864	1.00
188_E	214_R	0.861	1.00
122_V	130_M	0.860	1.00
48_V	53_R	0.857	1.00
126_T	226_V	0.852	1.00
108_V	189_I	0.851	1.00
227_Y	238_S	0.849	1.00
19_I	239_L	0.848	1.00
60_T	64_D	0.843	1.00
8_A	12_I	0.841	1.00
156_L	174_K	0.840	1.00
237_E	241_R	0.839	1.00
27_P	31_I	0.837	1.00
28_I	32_I	0.832	1.00
109_L	202_L	0.831	1.00
132_P	220_A	0.828	1.00
34_E	89_E	0.817	1.00
134_S	138_V	0.816	1.00
151_P	231_T	0.811	1.00
189_I	211_L	0.807	1.00
232_V	236_I	0.807	1.00
196_I	210_G	0.807	1.00
47_V	107_A	0.806	1.00
47_V	96_V	0.799	1.00
33_F	59_F	0.798	1.00
199_E	203_Q	0.796	1.00
115_I	190_F	0.795	1.00
133_I	142_L	0.790	1.00
13_P	54_V	0.789	1.00
138_V	141_F	0.780	1.00
37_Y	62_D	0.779	1.00
18_P	27_P	0.779	1.00
117_G	188_E	0.778	1.00
33_F	91_S	0.773	1.00
143_V	177_L	0.772	1.00
30_Q	59_F	0.769	1.00
103_G	201_E	0.769	1.00
37_Y	44_F	0.761	1.00
35_Q	39_I	0.760	1.00
96_V	111_A	0.755	1.00
48_V	55_I	0.755	1.00
133_I	220_A	0.748	1.00
166_I	179_V	0.747	1.00
62_D	89_E	0.746	1.00
37_Y	42_R	0.745	1.00
141_F	186_D	0.744	1.00
56_E	95_F	0.737	1.00
8_A	11_E	0.737	1.00
91_S	95_F	0.734	1.00
188_E	215_G	0.734	1.00
192_E	211_L	0.730	1.00
35_Q	38_D	0.721	1.00
101_P	106_D	0.721	1.00
133_I	137_V	0.720	1.00
187_E	190_F	0.720	1.00
149_P	152_Y	0.718	1.00
212_I	217_R	0.717	1.00
46_I	59_F	0.715	1.00
20_P	31_I	0.713	1.00
134_S	184_M	0.712	1.00
201_E	204_L	0.710	1.00
207_G	210_G	0.710	1.00
34_E	37_Y	0.708	1.00
90_N	93_I	0.707	1.00
49_G	101_P	0.706	1.00
18_P	25_F	0.700	1.00
218_F	221_I	0.698	1.00
191_D	214_R	0.696	1.00
8_A	17_F	0.695	1.00
196_I	202_L	0.695	1.00
8_A	232_V	0.695	1.00
127_I	238_S	0.695	1.00
46_I	93_I	0.694	1.00
31_I	242_L	0.693	1.00
19_I	127_I	0.692	1.00
37_Y	90_N	0.690	1.00
149_P	154_V	0.687	1.00
20_P	242_L	0.686	1.00
34_E	38_D	0.680	1.00
112_E	191_D	0.679	1.00
42_R	90_N	0.675	1.00
13_P	51_G	0.673	1.00
17_F	235_Y	0.666	1.00
131_I	134_S	0.661	1.00
27_P	58_H	0.661	1.00
100_E	106_D	0.654	1.00
35_Q	182_Y	0.653	1.00
33_F	46_I	0.653	1.00
196_I	207_G	0.652	1.00
198_Y	202_L	0.652	1.00
47_V	111_A	0.652	1.00
147_Q	176_N	0.651	1.00
36_L	120_L	0.650	1.00
200_E	203_Q	0.647	1.00
137_V	220_A	0.644	1.00
196_I	206_D	0.642	1.00
144_T	180_V	0.636	1.00
57_D	60_T	0.627	1.00
145_T	177_L	0.627	1.00
104_F	123_A	0.626	1.00
113_P	116_Q	0.620	1.00
134_S	137_V	0.618	1.00
130_M	136_M	0.617	1.00
155_V	219_K	0.616	1.00
31_I	35_Q	0.614	1.00
167_E	170_P	0.611	1.00
165_D	213_K	0.610	1.00
11_E	54_V	0.609	1.00
62_D	95_F	0.607	1.00
111_A	114_F	0.607	1.00
32_I	122_V	0.606	1.00
123_A	183_Y	0.602	1.00
44_F	93_I	0.601	1.00
17_F	239_L	0.601	1.00
228_D	234_N	0.600	1.00
4_R	14_K	0.597	1.00
35_Q	130_M	0.593	1.00
52_K	55_I	0.590	1.00
211_L	215_G	0.588	1.00
123_A	126_T	0.585	1.00
120_L	130_M	0.585	1.00
162_C	212_I	0.582	1.00
172_Q	175_S	0.581	1.00
185_F	207_G	0.578	1.00
32_I	124_A	0.574	1.00
105_G	193_L	0.573	1.00
99_P	106_D	0.572	1.00
119_F	190_F	0.570	1.00
122_V	182_Y	0.569	1.00
3_T	6_L	0.567	1.00
99_P	110_R	0.564	1.00
112_E	116_Q	0.564	1.00
106_D	202_L	0.564	1.00
161_G	164_I	0.558	1.00
12_I	17_F	0.555	1.00
201_E	205_T	0.554	1.00
104_F	179_V	0.546	1.00
16_M	27_P	0.546	1.00
99_P	102_K	0.545	1.00
180_V	226_V	0.544	1.00
128_L	180_V	0.544	1.00
14_K	125_D	0.538	1.00
209_K	212_I	0.536	1.00
105_G	202_L	0.530	1.00
206_D	210_G	0.528	1.00
152_Y	228_D	0.523	1.00
102_K	198_Y	0.523	1.00
180_V	222_M	0.522	1.00
141_F	218_F	0.521	1.00
227_Y	234_N	0.521	1.00
102_K	202_L	0.519	1.00
19_I	238_S	0.519	1.00
193_L	200_E	0.518	1.00
31_I	34_E	0.517	1.00
19_I	235_Y	0.516	1.00
125_D	230_G	0.514	1.00
56_E	60_T	0.514	1.00
164_I	167_E	0.513	1.00
7_P	10_K	0.513	1.00
94_A	97_N	0.510	1.00
15_E	55_I	0.510	1.00
167_E	172_Q	0.510	1.00
201_E	206_D	0.507	1.00
32_I	35_Q	0.504	0.99
163_V	166_I	0.503	0.99
193_L	202_L	0.502	0.99
64_D	93_I	0.501	0.99
128_L	222_M	0.500	0.99
98_Q	106_D	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2e3dA	3	0.9675	100	0.351	Contact Map
3jukA	3	0.939	100	0.352	Contact Map
2ux8A	4	0.9675	100	0.367	Contact Map
2pa4A	3	0.9715	100	0.387	Contact Map
1iimA	3	0.8862	100	0.389	Contact Map
1lvwA	3	0.8862	100	0.393	Contact Map
1mc3A	3	0.8862	100	0.394	Contact Map
4ho4A	3	0.8862	100	0.399	Contact Map
1tzfA	4	0.9024	100	0.415	Contact Map
2ggoA	3	0.8537	100	0.415	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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