Q7LXF5 - SULSO - GREMLIN Contacts

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Q7LXF5 - Uncharacterized protein

UniProt:	Q7LXF5	Sequences: MFFARLIPLKGVLELPFIVKEVITMSGYKELKIVVMGKFPDDNLKAIFFEIVKRLQLEDNIIYKGYLTSREELFNMVSEARCMIYPTHEDSFSLAILESITVGTPVVAYDIPGPKSVYSGLSAVKFVEEYNIKLMATEVTKILTMNDDEYNSLIFNDKMDKFIEKHTDWDLVVERYYRDLMSLF	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	184 (167)
Sequences:	45445 (37589)
Seq/√Len:	2908.8

ECOLI - WCAL GLGA WBBK RFAG WCAI RFAB WCAC
BACSU - YQGM GLGA YPJH YTCC EPSD COTSA EPSF TAGE TUAH TUAC YKVP CGEB
HALSA - Q9HQQ0 Q9HSV4 Q9HSW1 Q9HS45 Q9HRP9 Q9HQT2 Q9HSV2 Q9HRP8
SULSO - Q7LXF5 Q980C8 Q97ZD3 Q97XT7 Q97VL4 Q97XT5 Q97UM0 Q97V80 Q7LXI2 Q97XT1 Q97UU3 Q97V61 Q97XF6 Q97XT9 Q97XU2 Q97XT8 Q97XT6 Q7LXM9 Q7LXF8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
32_K	62_I	2.997	1.00
45_K	49_F	2.810	1.00
34_V	64_K	2.784	1.00
83_M	99_S	2.579	1.00
21_E	136_A	2.536	1.00
17_F	51_I	2.371	1.00
23_I	60_N	2.266	1.00
162_F	166_H	2.081	1.00
11_G	14_E	2.043	1.00
44_L	47_I	1.910	1.00
34_V	62_I	1.880	1.00
15_L	33_I	1.867	1.00
17_F	132_I	1.858	1.00
51_I	55_L	1.848	1.00
19_V	33_I	1.814	1.00
145_M	150_Y	1.750	1.00
138_E	141_K	1.745	1.00
11_G	88_H	1.729	1.00
110_D	115_K	1.725	1.00
141_K	150_Y	1.703	1.00
160_D	164_E	1.694	1.00
119_S	122_S	1.685	1.00
123_A	162_F	1.674	1.00
36_M	76_M	1.671	1.00
141_K	145_M	1.657	1.00
103_G	160_D	1.634	1.00
9_L	89_E	1.629	1.00
118_Y	124_V	1.626	1.00
125_K	138_E	1.605	1.00
21_E	133_K	1.597	1.00
119_S	162_F	1.590	1.00
14_E	88_H	1.534	1.00
53_K	58_E	1.524	1.00
20_K	55_L	1.505	1.00
140_T	144_T	1.492	1.00
74_F	102_V	1.487	1.00
122_S	158_K	1.477	1.00
171_L	175_R	1.476	1.00
151_N	156_N	1.471	1.00
19_V	31_L	1.465	1.00
108_A	114_P	1.437	1.00
119_S	123_A	1.432	1.00
83_M	104_T	1.419	1.00
128_E	134_L	1.419	1.00
38_K	45_K	1.416	1.00
67_L	72_E	1.393	1.00
15_L	84_I	1.384	1.00
134_L	138_E	1.376	1.00
34_V	76_M	1.371	1.00
28_Y	140_T	1.340	1.00
14_E	132_I	1.340	1.00
3_F	73_L	1.334	1.00
169_W	172_V	1.322	1.00
125_K	141_K	1.321	1.00
34_V	80_A	1.317	1.00
78_S	102_V	1.312	1.00
131_N	134_L	1.296	1.00
13_L	51_I	1.294	1.00
110_D	128_E	1.290	1.00
36_M	64_K	1.287	1.00
172_V	176_Y	1.273	1.00
12_V	35_V	1.258	1.00
80_A	104_T	1.257	1.00
22_V	140_T	1.247	1.00
34_V	79_E	1.239	1.00
177_Y	181_M	1.222	1.00
127_V	138_E	1.198	1.00
132_I	136_A	1.160	1.00
162_F	165_K	1.154	1.00
28_Y	144_T	1.154	1.00
153_L	158_K	1.152	1.00
158_K	161_K	1.149	1.00
92_F	97_L	1.142	1.00
150_Y	153_L	1.118	1.00
6_L	35_V	1.117	1.00
88_H	130_Y	1.106	1.00
112_P	115_K	1.095	1.00
18_I	135_M	1.095	1.00
21_E	132_I	1.094	1.00
72_E	75_N	1.091	1.00
96_I	114_P	1.082	1.00
36_M	67_L	1.064	1.00
67_L	76_M	1.049	1.00
103_G	157_D	1.047	1.00
168_D	171_L	1.043	1.00
64_K	67_L	1.041	1.00
14_E	130_Y	1.036	1.00
86_P	135_M	1.032	1.00
7_I	40_P	1.028	1.00
73_L	77_V	1.015	1.00
51_I	54_R	1.014	1.00
125_K	155_F	1.014	1.00
134_L	137_T	1.009	1.00
142_I	155_F	1.005	1.00
14_E	109_Y	0.996	1.00
171_L	174_E	0.996	1.00
74_F	78_S	0.992	1.00
120_G	138_E	0.984	1.00
136_A	140_T	0.980	1.00
85_Y	96_I	0.977	1.00
23_I	28_Y	0.971	1.00
85_Y	95_A	0.965	1.00
38_K	66_Y	0.962	1.00
127_V	135_M	0.955	1.00
161_K	165_K	0.944	1.00
5_R	9_L	0.941	1.00
109_Y	127_V	0.940	1.00
87_T	90_D	0.936	1.00
175_R	178_R	0.933	1.00
172_V	175_R	0.925	1.00
96_I	108_A	0.923	1.00
85_Y	114_P	0.913	1.00
176_Y	180_L	0.905	1.00
77_V	102_V	0.902	1.00
156_N	159_M	0.900	1.00
93_S	114_P	0.896	1.00
100_I	106_V	0.896	1.00
150_Y	155_F	0.895	1.00
13_L	88_H	0.894	1.00
163_I	166_H	0.891	1.00
68_T	72_E	0.884	1.00
50_E	54_R	0.883	1.00
13_L	17_F	0.883	1.00
113_G	116_S	0.875	1.00
161_K	164_E	0.873	1.00
14_E	17_F	0.873	1.00
146_N	149_E	0.859	1.00
100_I	159_M	0.856	1.00
108_A	118_Y	0.855	1.00
100_I	162_F	0.843	1.00
64_K	76_M	0.837	1.00
17_F	55_L	0.830	1.00
108_A	126_F	0.826	1.00
16_P	52_V	0.817	1.00
14_E	135_M	0.817	1.00
96_I	117_V	0.816	1.00
10_K	95_A	0.809	1.00
84_I	139_V	0.807	1.00
15_L	86_P	0.806	1.00
169_W	173_V	0.804	1.00
152_S	157_D	0.803	1.00
52_V	63_Y	0.794	1.00
19_V	60_N	0.790	1.00
104_T	156_N	0.785	1.00
118_Y	126_F	0.782	1.00
146_N	151_N	0.780	1.00
157_D	161_K	0.777	1.00
20_K	24_T	0.776	1.00
13_L	47_I	0.776	1.00
125_K	142_I	0.776	1.00
49_F	53_K	0.775	1.00
46_A	49_F	0.769	1.00
22_V	139_V	0.758	1.00
111_I	114_P	0.743	1.00
107_V	127_V	0.741	1.00
10_K	90_D	0.740	1.00
22_V	143_L	0.737	1.00
13_L	44_L	0.730	1.00
121_L	141_K	0.726	1.00
137_T	141_K	0.725	1.00
105_P	156_N	0.723	1.00
20_K	23_I	0.721	1.00
156_N	160_D	0.718	1.00
83_M	95_A	0.714	1.00
22_V	31_L	0.713	1.00
145_M	151_N	0.712	1.00
76_M	79_E	0.708	1.00
3_F	77_V	0.706	1.00
155_F	158_K	0.703	1.00
93_S	96_I	0.699	1.00
46_A	50_E	0.699	1.00
76_M	80_A	0.693	1.00
22_V	136_A	0.689	1.00
100_I	123_A	0.685	1.00
52_V	57_L	0.679	1.00
110_D	126_F	0.677	1.00
47_I	51_I	0.671	1.00
99_S	104_T	0.666	1.00
18_I	136_A	0.665	1.00
90_D	93_S	0.664	1.00
23_I	29_K	0.662	1.00
77_V	104_T	0.659	1.00
10_K	87_T	0.658	1.00
109_Y	135_M	0.656	1.00
123_A	159_M	0.655	1.00
82_C	139_V	0.655	1.00
82_C	142_I	0.654	1.00
75_N	79_E	0.652	1.00
125_K	150_Y	0.650	1.00
39_F	45_K	0.649	1.00
31_L	143_L	0.646	1.00
168_D	172_V	0.645	1.00
39_F	44_L	0.644	1.00
20_K	57_L	0.636	1.00
174_E	178_R	0.634	1.00
173_V	177_Y	0.633	1.00
8_P	13_L	0.632	1.00
29_K	144_T	0.631	1.00
32_K	60_N	0.624	1.00
85_Y	93_S	0.623	1.00
96_I	106_V	0.622	1.00
67_L	73_L	0.622	1.00
6_L	45_K	0.620	1.00
120_G	123_A	0.613	1.00
47_I	50_E	0.612	1.00
52_V	61_I	0.606	1.00
142_I	151_N	0.606	1.00
44_L	48_F	0.605	1.00
12_V	44_L	0.600	1.00
111_I	129_E	0.600	1.00
128_E	131_N	0.597	1.00
28_Y	31_L	0.595	1.00
109_Y	129_E	0.591	1.00
107_V	138_E	0.591	1.00
17_F	20_K	0.588	1.00
155_F	159_M	0.584	1.00
146_N	152_S	0.580	1.00
115_K	126_F	0.578	1.00
21_E	24_T	0.578	1.00
18_I	132_I	0.572	1.00
105_P	142_I	0.570	1.00
97_L	117_V	0.566	1.00
17_F	21_E	0.559	1.00
133_K	136_A	0.558	1.00
118_Y	123_A	0.557	1.00
145_M	149_E	0.549	1.00
120_G	125_K	0.543	1.00
50_E	53_K	0.543	1.00
81_R	151_N	0.542	1.00
75_N	78_S	0.541	1.00
149_E	153_L	0.541	1.00
152_S	156_N	0.541	1.00
8_P	44_L	0.539	1.00
176_Y	179_D	0.538	1.00
93_S	97_L	0.538	1.00
97_L	163_I	0.535	1.00
107_V	142_I	0.531	1.00
52_V	55_L	0.530	1.00
3_F	36_M	0.529	1.00
87_T	95_A	0.528	1.00
18_I	139_V	0.526	1.00
100_I	156_N	0.525	1.00
137_T	140_T	0.521	1.00
83_M	106_V	0.514	1.00
19_V	22_V	0.513	1.00
133_K	137_T	0.509	1.00
8_P	88_H	0.508	1.00
123_A	158_K	0.504	1.00
141_K	144_T	0.500	1.00
31_L	81_R	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4n9wA	1	0.9293	100	0.11	Contact Map
2r60A	1	0.9674	100	0.148	Contact Map
2x6qA	1	0.9511	100	0.151	Contact Map
3oy2A	2	0.962	100	0.171	Contact Map
3c48A	2	0.9348	100	0.178	Contact Map
1rzuA	1	0.9239	100	0.187	Contact Map
3s28A	4	0.9674	100	0.189	Contact Map
3froA	3	0.9402	100	0.191	Contact Map
2jjmA	4	0.9348	100	0.193	Contact Map
4rbnA	3	0.9674	100	0.195	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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