Q7LX77 - SULSO - GREMLIN Contacts

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Q7LX77 - Uncharacterized protein

UniProt:	Q7LX77	Sequences: MTRYKLSAEVSFSKPSEIMGRLYILPYRDNAQKVLHFNIDHPSFCKVSINQDRFRNEHLDFKCNPSDDFSIIISYEVEVNSFSKSENEEEVFLSSSKYVNVDKFKMINVRYFSFDDLIDEVISMVRDSIRYDKNNKSVKSAFGSLIMGSGVCVNYSHVAIGILRALGIPARYVIGLIPFSTKEAHAWIEVKIGDVWFPVDPTNGIKGMQYLKWAIGRDDNDVRSKIWYSKPVSFDFSFDWNFR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	243 (237)
Sequences:	3181 (2247)
Seq/√Len:	146.0

SULSO - Q7LX77 Q97YL4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
132_D	149_S	3.897	1.00
159_A	188_I	3.822	1.00
107_I	128_S	2.846	1.00
118_I	190_V	2.794	1.00
124_M	128_S	2.741	1.00
36_H	78_E	2.698	1.00
168_I	190_V	2.676	1.00
9_E	72_I	2.616	1.00
189_E	198_P	2.614	1.00
7_S	72_I	2.526	1.00
130_R	149_S	2.458	1.00
22_L	225_K	2.404	1.00
96_S	99_V	2.404	1.00
7_S	74_S	2.383	1.00
160_I	188_I	2.359	1.00
144_S	158_V	2.351	1.00
102_D	142_F	2.297	1.00
113_S	116_D	2.275	1.00
125_V	129_I	2.242	1.00
123_S	127_D	2.169	1.00
9_E	70_S	2.128	1.00
11_S	70_S	2.113	1.00
128_S	148_G	2.076	1.00
129_I	155_Y	2.019	1.00
73_I	225_K	2.001	1.00
123_S	204_G	1.994	1.00
143_G	147_M	1.994	1.00
35_L	80_N	1.967	1.00
52_D	56_N	1.956	1.00
131_Y	202_T	1.920	1.00
5_K	76_E	1.918	1.00
3_R	76_E	1.911	1.00
175_G	187_W	1.842	1.00
11_S	237_S	1.835	1.00
107_I	162_I	1.834	1.00
40_D	74_S	1.832	1.00
132_D	135_N	1.812	1.00
107_I	145_L	1.767	1.00
163_L	190_V	1.707	1.00
22_L	61_F	1.706	1.00
107_I	111_Y	1.693	1.00
3_R	78_E	1.682	1.00
212_K	215_I	1.673	1.00
129_I	158_V	1.666	1.00
207_G	210_Y	1.663	1.00
106_M	110_R	1.658	1.00
111_Y	124_M	1.644	1.00
171_R	189_E	1.621	1.00
223_R	226_I	1.606	1.00
5_K	74_S	1.582	1.00
33_K	80_N	1.515	1.00
7_S	239_D	1.490	1.00
35_L	78_E	1.472	1.00
126_R	204_G	1.458	1.00
9_E	237_S	1.455	1.00
188_I	201_P	1.431	1.00
122_I	199_V	1.427	1.00
156_S	188_I	1.400	1.00
50_N	58_H	1.391	1.00
11_S	235_D	1.373	1.00
125_V	159_A	1.358	1.00
105_K	165_A	1.354	1.00
160_I	170_A	1.334	1.00
49_I	57_E	1.329	1.00
28_R	33_K	1.311	1.00
95_S	100_N	1.310	1.00
38_N	76_E	1.308	1.00
83_S	208_M	1.307	1.00
49_I	59_L	1.302	1.00
163_L	188_I	1.280	1.00
219_D	223_R	1.280	1.00
108_N	112_F	1.270	1.00
156_S	160_I	1.267	1.00
192_I	197_F	1.251	1.00
104_F	161_G	1.237	1.00
141_A	144_S	1.236	1.00
6_L	176_L	1.229	1.00
177_I	203_N	1.229	1.00
159_A	163_L	1.228	1.00
116_D	120_E	1.224	1.00
120_E	123_S	1.215	1.00
105_K	109_V	1.214	1.00
117_L	166_L	1.211	1.00
129_I	144_S	1.205	1.00
73_I	77_V	1.195	1.00
118_I	199_V	1.190	1.00
15_P	69_F	1.183	1.00
131_Y	185_H	1.183	1.00
83_S	86_E	1.178	1.00
53_R	91_V	1.166	1.00
140_S	143_G	1.163	1.00
121_V	166_L	1.159	1.00
99_V	161_G	1.159	1.00
25_L	59_L	1.149	1.00
104_F	162_I	1.145	1.00
96_S	218_D	1.136	0.99
162_I	165_A	1.126	0.99
25_L	37_F	1.123	0.99
118_I	192_I	1.108	0.99
157_H	218_D	1.096	0.99
122_I	159_A	1.091	0.99
153_V	172_Y	1.090	0.99
34_V	37_F	1.087	0.99
125_V	155_Y	1.085	0.99
119_D	123_S	1.076	0.99
163_L	199_V	1.073	0.99
10_V	20_G	1.072	0.99
21_R	58_H	1.067	0.99
145_L	158_V	1.060	0.99
125_V	158_V	1.058	0.99
159_A	199_V	1.050	0.99
73_I	79_V	1.043	0.99
111_Y	120_E	1.040	0.99
89_E	92_F	1.031	0.99
136_K	153_V	1.030	0.99
136_K	151_V	1.026	0.99
115_D	197_F	1.014	0.99
39_I	75_Y	1.007	0.99
160_I	172_Y	1.007	0.99
5_K	239_D	1.005	0.99
17_E	67_D	1.005	0.99
186_A	202_T	0.993	0.99
217_R	221_D	0.992	0.99
110_R	124_M	0.989	0.99
27_Y	215_I	0.988	0.99
151_V	172_Y	0.983	0.98
37_F	77_V	0.981	0.98
172_Y	222_V	0.978	0.98
104_F	107_I	0.977	0.98
47_V	59_L	0.976	0.98
145_L	148_G	0.971	0.98
216_G	221_D	0.970	0.98
14_K	18_I	0.967	0.98
107_I	124_M	0.966	0.98
114_F	193_G	0.959	0.98
152_C	202_T	0.952	0.98
138_V	219_D	0.946	0.98
175_G	210_Y	0.943	0.98
135_N	149_S	0.942	0.98
89_E	191_K	0.939	0.98
25_L	49_I	0.935	0.98
141_A	157_H	0.935	0.98
131_Y	152_C	0.929	0.98
40_D	76_E	0.925	0.98
71_I	75_Y	0.920	0.98
133_K	155_Y	0.896	0.97
39_I	59_L	0.895	0.97
97_K	220_N	0.887	0.97
152_C	186_A	0.886	0.97
69_F	75_Y	0.884	0.97
229_S	232_V	0.878	0.97
108_N	166_L	0.878	0.97
95_S	101_V	0.874	0.97
81_S	208_M	0.871	0.97
216_G	222_V	0.863	0.97
129_I	148_G	0.862	0.96
178_P	240_W	0.856	0.96
125_V	162_I	0.856	0.96
107_I	110_R	0.854	0.96
93_L	96_S	0.854	0.96
198_P	212_K	0.854	0.96
153_V	219_D	0.853	0.96
142_F	146_I	0.853	0.96
151_V	154_N	0.850	0.96
151_V	203_N	0.848	0.96
99_V	157_H	0.847	0.96
116_D	119_D	0.845	0.96
131_Y	155_Y	0.844	0.96
136_K	172_Y	0.840	0.96
93_L	168_I	0.834	0.96
25_L	57_E	0.834	0.96
88_E	91_V	0.832	0.96
91_V	95_S	0.832	0.96
156_S	186_A	0.830	0.96
130_R	148_G	0.827	0.96
153_V	184_A	0.823	0.95
23_Y	58_H	0.822	0.95
81_S	210_Y	0.822	0.95
110_R	128_S	0.817	0.95
121_V	163_L	0.816	0.95
179_F	182_K	0.815	0.95
131_Y	151_V	0.814	0.95
131_Y	177_I	0.811	0.95
10_V	225_K	0.808	0.95
13_S	232_V	0.801	0.95
173_V	212_K	0.796	0.95
236_F	240_W	0.789	0.94
161_G	165_A	0.789	0.94
108_N	165_A	0.787	0.94
104_F	145_L	0.779	0.94
190_V	199_V	0.778	0.94
153_V	183_E	0.778	0.94
98_Y	218_D	0.776	0.94
6_L	10_V	0.774	0.94
106_M	109_V	0.773	0.94
92_F	96_S	0.771	0.94
112_F	166_L	0.768	0.93
44_F	47_V	0.768	0.93
54_F	91_V	0.766	0.93
118_I	122_I	0.761	0.93
97_K	100_N	0.751	0.93
25_L	39_I	0.751	0.93
187_W	210_Y	0.749	0.93
130_R	155_Y	0.748	0.93
174_I	214_A	0.748	0.93
12_F	22_L	0.746	0.92
26_P	32_Q	0.746	0.92
172_Y	203_N	0.746	0.92
96_S	157_H	0.738	0.92
230_K	234_F	0.735	0.92
155_Y	202_T	0.733	0.92
118_I	163_L	0.733	0.92
119_D	199_V	0.733	0.92
120_E	124_M	0.719	0.91
91_V	94_S	0.715	0.91
100_N	142_F	0.715	0.91
235_D	238_F	0.705	0.90
92_F	95_S	0.701	0.90
138_V	144_S	0.690	0.89
117_L	120_E	0.689	0.89
151_V	186_A	0.688	0.89
229_S	233_S	0.688	0.89
151_V	183_E	0.687	0.89
109_V	112_F	0.687	0.89
54_F	221_D	0.686	0.89
41_H	61_F	0.686	0.89
94_S	217_R	0.679	0.88
33_K	82_F	0.678	0.88
8_A	176_L	0.674	0.88
19_M	22_L	0.669	0.88
135_N	147_M	0.668	0.88
151_V	216_G	0.668	0.88
41_H	213_W	0.667	0.88
99_V	141_A	0.663	0.87
51_Q	57_E	0.662	0.87
193_G	227_W	0.662	0.87
8_A	236_F	0.661	0.87
189_E	215_I	0.658	0.87
83_S	207_G	0.658	0.87
174_I	224_S	0.654	0.86
157_H	221_D	0.651	0.86
93_L	169_P	0.649	0.86
138_V	145_L	0.649	0.86
153_V	174_I	0.648	0.86
104_F	141_A	0.647	0.86
138_V	153_V	0.645	0.86
45_C	64_N	0.644	0.86
108_N	162_I	0.642	0.85
112_F	117_L	0.641	0.85
18_I	68_D	0.641	0.85
152_C	203_N	0.640	0.85
32_Q	212_K	0.639	0.85
224_S	227_W	0.637	0.85
144_S	153_V	0.637	0.85
103_K	106_M	0.633	0.85
6_L	12_F	0.629	0.84
69_F	73_I	0.628	0.84
67_D	73_I	0.627	0.84
155_Y	203_N	0.626	0.84
182_K	198_P	0.626	0.84
22_L	59_L	0.626	0.84
185_H	202_T	0.626	0.84
187_W	224_S	0.624	0.84
22_L	224_S	0.618	0.83
184_A	219_D	0.618	0.83
20_G	71_I	0.616	0.83
220_N	226_I	0.615	0.83
109_V	239_D	0.613	0.83
185_H	203_N	0.612	0.83
137_S	147_M	0.603	0.82
90_E	97_K	0.602	0.82
64_N	67_D	0.602	0.82
55_R	192_I	0.599	0.81
92_F	97_K	0.598	0.81
197_F	205_I	0.598	0.81
136_K	203_N	0.598	0.81
90_E	94_S	0.596	0.81
122_I	204_G	0.596	0.81
26_P	34_V	0.596	0.81
141_A	189_E	0.593	0.81
79_V	85_S	0.593	0.81
151_V	157_H	0.592	0.81
231_P	235_D	0.592	0.81
129_I	141_A	0.591	0.80
81_S	84_K	0.590	0.80
174_I	185_H	0.586	0.80
157_H	160_I	0.586	0.80
114_F	117_L	0.585	0.80
111_Y	121_V	0.584	0.80
30_N	33_K	0.583	0.80
135_N	151_V	0.581	0.79
214_A	226_I	0.580	0.79
153_V	186_A	0.580	0.79
155_Y	201_P	0.579	0.79
131_Y	156_S	0.579	0.79
107_I	112_F	0.578	0.79
97_K	102_D	0.577	0.79
16_S	68_D	0.576	0.79
227_W	231_P	0.576	0.79
29_D	212_K	0.576	0.79
28_R	51_Q	0.573	0.78
77_V	81_S	0.573	0.78
72_I	123_S	0.572	0.78
172_Y	186_A	0.572	0.78
218_D	221_D	0.572	0.78
152_C	185_H	0.571	0.78
136_K	144_S	0.570	0.78
79_V	84_K	0.570	0.78
155_Y	179_F	0.567	0.78
97_K	141_A	0.566	0.78
119_D	122_I	0.558	0.77
153_V	203_N	0.557	0.76
184_A	213_W	0.556	0.76
116_D	168_I	0.555	0.76
96_S	221_D	0.554	0.76
32_Q	185_H	0.552	0.76
89_E	95_S	0.552	0.76
95_S	161_G	0.551	0.76
79_V	86_E	0.549	0.75
179_F	203_N	0.549	0.75
4_Y	211_L	0.547	0.75
42_P	74_S	0.546	0.75
115_D	191_K	0.546	0.75
158_V	172_Y	0.541	0.74
136_K	152_C	0.540	0.74
52_D	55_R	0.539	0.74
27_Y	212_K	0.539	0.74
198_P	206_K	0.537	0.74
198_P	210_Y	0.535	0.74
27_Y	56_N	0.534	0.73
118_I	159_A	0.533	0.73
177_I	180_S	0.532	0.73
182_K	203_N	0.528	0.73
12_F	227_W	0.526	0.72
188_I	199_V	0.525	0.72
96_S	141_A	0.525	0.72
155_Y	159_A	0.521	0.72
28_R	32_Q	0.521	0.72
135_N	138_V	0.518	0.71
178_P	209_Q	0.517	0.71
114_F	190_V	0.517	0.71
218_D	238_F	0.516	0.71
4_Y	240_W	0.512	0.70
81_S	86_E	0.512	0.70
51_Q	55_R	0.511	0.70
122_I	126_R	0.511	0.70
180_S	209_Q	0.510	0.70
113_S	117_L	0.509	0.70
26_P	187_W	0.507	0.70
152_C	227_W	0.507	0.70
6_L	227_W	0.507	0.70
7_S	229_S	0.505	0.69
88_E	92_F	0.505	0.69
177_I	209_Q	0.505	0.69
184_A	203_N	0.503	0.69
119_D	197_F	0.500	0.68

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3isrA	3	0.9835	100	0.218	Contact Map
4xz7A	2	0.8889	100	0.485	Contact Map
2f4mA	2	0.7449	100	0.593	Contact Map
3kd4A	3	0.9095	100	0.595	Contact Map
4ktyA	1	0.9053	100	0.607	Contact Map
1g0dA	1	0.9342	99.9	0.611	Contact Map
2q3zA	2	0.9671	99.9	0.616	Contact Map
1l9mA	2	0.9588	99.9	0.63	Contact Map
1x3zA	1	0.8313	99.9	0.637	Contact Map
4fgqA	1	0.6543	99.9	0.64	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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