Q7LX70 - SULSO - GREMLIN Contacts

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Q7LX70 - Pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase delta chain) (PorD-like)

UniProt:	Q7LX70	Sequences: MGVKDEVKYVEIVYRGIFQKRLAKYIAEGIVYTAREMGRPALSFGRYGDSPERNGVPAKYYVGIGDGVNEEDLIGYSTRVEPDLVDVIIVLDDTLLKGVESWAWQGVQPINLKLKSNGTMLVTSTKRINELLKMIPKKDFNWTLGVIKTEPSFSGLWAFKDDLTMEKVWGGLAKLRPDIIDLDHLLKYVTKKQDANKRVSAVREAYSSVDYRTVMKGEGIDFVYNPPRLLTWQEMLEGTVIPAVPRGKRNELFKRGTTKFERPTVDFDTCIKCKLCWVYCPDECFDETPDGYYDIAYDYCVGCGICAEVCPVKDCIVMVDESMFTDYRRPYEMWKEDKAKYKEWLKTVRQARKERVYVPGLGR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	363 (313)
Sequences:	1291 (820)
Seq/√Len:	46.4

ECOLI - NIFJ
SULSO - Q7LX70

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
192_K	196_N	6.231	1.00
143_T	211_Y	5.687	1.00
39_R	66_D	4.053	1.00
116_S	141_N	3.605	1.00
151_P	155_G	3.530	1.00
266_D	269_T	3.384	1.00
196_N	200_S	3.321	1.00
87_V	121_L	3.173	1.00
114_L	142_W	3.118	1.00
86_D	115_K	3.086	1.00
338_K	341_Y	2.996	1.00
128_I	210_D	2.981	1.00
328_R	331_Y	2.727	1.00
264_T	319_V	2.683	1.00
187_K	191_K	2.667	1.00
155_G	204_E	2.614	1.00
236_L	239_T	2.587	1.00
264_T	324_F	2.549	1.00
36_E	188_Y	2.547	1.00
114_L	118_G	2.543	1.00
231_T	234_E	2.463	1.00
120_M	144_L	2.427	1.00
119_T	143_T	2.422	1.00
258_T	301_V	2.386	1.00
331_Y	334_W	2.375	1.00
262_R	297_Y	2.276	1.00
266_D	317_V	2.227	1.00
112_L	231_T	2.210	1.00
216_K	219_G	2.102	1.00
204_E	207_S	2.032	0.99
148_K	151_P	2.020	0.99
249_R	252_L	1.982	0.99
164_T	168_V	1.935	0.99
12_I	15_R	1.931	0.99
125_T	148_K	1.927	0.99
122_V	144_L	1.921	0.99
184_H	187_K	1.920	0.99
144_L	212_R	1.893	0.99
91_L	164_T	1.887	0.99
184_H	188_Y	1.886	0.99
96_L	139_D	1.875	0.99
284_C	296_A	1.872	0.99
196_N	199_V	1.871	0.99
127_R	130_E	1.862	0.99
117_N	141_N	1.857	0.99
312_V	315_C	1.817	0.99
339_A	342_K	1.814	0.99
119_T	175_L	1.801	0.99
154_S	261_E	1.767	0.98
284_C	301_V	1.739	0.98
331_Y	335_K	1.703	0.98
332_E	336_E	1.695	0.98
110_I	139_D	1.687	0.98
305_I	308_E	1.676	0.98
29_G	189_V	1.675	0.98
193_Q	197_K	1.664	0.98
284_C	295_I	1.657	0.98
90_V	120_M	1.643	0.98
190_T	203_R	1.638	0.97
11_E	14_Y	1.637	0.97
341_Y	344_W	1.610	0.97
170_G	205_A	1.606	0.97
321_E	325_T	1.592	0.97
28_E	189_V	1.550	0.96
257_T	298_D	1.524	0.96
338_K	342_K	1.523	0.96
149_T	153_F	1.490	0.96
128_I	213_T	1.490	0.96
29_G	166_E	1.484	0.95
174_K	182_L	1.478	0.95
269_T	315_C	1.475	0.95
288_T	291_G	1.462	0.95
330_P	333_M	1.452	0.95
337_D	340_K	1.445	0.95
332_E	335_K	1.434	0.94
156_L	197_K	1.431	0.94
93_D	124_S	1.406	0.94
146_V	210_D	1.405	0.94
307_A	317_V	1.399	0.94
150_E	260_F	1.397	0.94
109_P	112_L	1.394	0.94
343_E	346_K	1.386	0.93
333_M	338_K	1.386	0.93
235_M	239_T	1.381	0.93
328_R	332_E	1.376	0.93
342_K	345_L	1.362	0.93
341_Y	346_K	1.359	0.93
337_D	341_Y	1.349	0.92
30_I	43_S	1.347	0.92
15_R	92_D	1.340	0.92
40_P	73_L	1.329	0.92
333_M	336_E	1.322	0.92
331_Y	337_D	1.317	0.92
166_E	189_V	1.315	0.91
128_I	146_V	1.314	0.91
305_I	309_V	1.295	0.91
146_V	212_R	1.294	0.91
110_I	113_K	1.290	0.91
130_E	134_M	1.283	0.90
170_G	206_Y	1.274	0.90
296_A	332_E	1.272	0.90
112_L	234_E	1.264	0.90
182_L	206_Y	1.257	0.89
340_K	343_E	1.242	0.89
307_A	318_M	1.238	0.89
335_K	338_K	1.215	0.88
10_V	14_Y	1.206	0.87
279_Y	305_I	1.206	0.87
46_R	59_K	1.197	0.87
334_W	337_D	1.191	0.87
332_E	338_K	1.189	0.87
19_Q	54_N	1.178	0.86
93_D	125_T	1.166	0.86
330_P	334_W	1.159	0.85
342_K	346_K	1.152	0.85
339_A	344_W	1.145	0.85
85_V	88_I	1.141	0.84
124_S	131_L	1.138	0.84
269_T	313_K	1.134	0.84
46_R	233_Q	1.133	0.84
336_E	340_K	1.129	0.84
341_Y	345_L	1.098	0.82
28_E	121_L	1.097	0.82
193_Q	196_N	1.095	0.82
178_D	182_L	1.091	0.82
19_Q	29_G	1.083	0.81
85_V	113_K	1.083	0.81
11_E	113_K	1.078	0.81
124_S	146_V	1.076	0.81
296_A	336_E	1.076	0.81
11_E	15_R	1.073	0.80
269_T	312_V	1.069	0.80
188_Y	191_K	1.062	0.80
10_V	15_R	1.061	0.80
327_Y	330_P	1.060	0.80
333_M	337_D	1.057	0.79
319_V	324_F	1.057	0.79
337_D	342_K	1.055	0.79
264_T	317_V	1.049	0.79
186_L	206_Y	1.036	0.78
331_Y	338_K	1.034	0.78
171_G	205_A	1.031	0.78
340_K	345_L	1.029	0.78
331_Y	336_E	1.029	0.78
90_V	110_I	1.029	0.78
204_E	208_S	1.029	0.78
131_L	146_V	1.028	0.78
321_E	324_F	1.028	0.78
329_R	332_E	1.027	0.77
330_P	337_D	1.023	0.77
338_K	343_E	1.020	0.77
143_T	213_T	1.018	0.77
200_S	204_E	1.017	0.77
82_P	85_V	1.013	0.76
186_L	203_R	1.011	0.76
46_R	81_E	1.010	0.76
182_L	186_L	1.005	0.76
329_R	333_M	0.998	0.75
156_L	167_K	0.996	0.75
335_K	340_K	0.995	0.75
332_E	337_D	0.992	0.75
271_I	275_L	0.991	0.75
338_K	344_W	0.990	0.75
340_K	344_W	0.990	0.75
264_T	323_M	0.981	0.74
111_N	114_L	0.981	0.74
236_L	240_V	0.979	0.74
334_W	340_K	0.978	0.74
110_I	120_M	0.977	0.74
158_A	197_K	0.973	0.73
28_E	87_V	0.972	0.73
132_L	217_G	0.967	0.73
145_G	211_Y	0.966	0.73
340_K	346_K	0.950	0.72
29_G	89_I	0.946	0.71
287_E	291_G	0.943	0.71
334_W	341_Y	0.933	0.70
279_Y	309_V	0.922	0.69
186_L	190_T	0.918	0.69
333_M	340_K	0.913	0.69
338_K	346_K	0.913	0.69
126_K	134_M	0.912	0.69
192_K	199_V	0.910	0.68
334_W	338_K	0.905	0.68
27_A	47_Y	0.904	0.68
8_K	179_I	0.902	0.68
335_K	339_A	0.897	0.67
152_S	167_K	0.884	0.66
331_Y	340_K	0.881	0.66
335_K	342_K	0.879	0.66
338_K	345_L	0.879	0.66
9_Y	82_P	0.877	0.65
109_P	231_T	0.876	0.65
152_S	171_G	0.872	0.65
41_A	227_P	0.867	0.65
152_S	208_S	0.867	0.65
319_V	323_M	0.866	0.65
152_S	204_E	0.863	0.64
294_D	331_Y	0.861	0.64
57_P	99_V	0.857	0.64
336_E	339_A	0.846	0.63
88_I	110_I	0.841	0.62
13_V	57_P	0.833	0.61
240_V	274_K	0.832	0.61
43_S	168_V	0.828	0.61
159_F	163_L	0.828	0.61
84_L	115_K	0.827	0.61
176_R	180_I	0.822	0.60
151_P	210_D	0.821	0.60
57_P	230_L	0.814	0.60
28_E	166_E	0.813	0.60
259_K	263_P	0.812	0.59
127_R	148_K	0.802	0.59
174_K	209_V	0.800	0.58
216_K	220_I	0.799	0.58
19_Q	55_G	0.798	0.58
263_P	318_M	0.794	0.58
337_D	343_E	0.792	0.58
46_R	230_L	0.791	0.57
170_G	182_L	0.790	0.57
287_E	290_D	0.788	0.57
93_D	126_K	0.787	0.57
215_M	218_E	0.787	0.57
121_L	175_L	0.786	0.57
288_T	339_A	0.784	0.57
128_I	132_L	0.784	0.57
307_A	316_I	0.782	0.57
97_K	134_M	0.775	0.56
128_I	212_R	0.770	0.55
170_G	186_L	0.769	0.55
89_I	156_L	0.766	0.55
294_D	328_R	0.764	0.55
271_I	284_C	0.762	0.55
10_V	13_V	0.759	0.54
93_D	134_M	0.759	0.54
138_K	283_E	0.755	0.54
296_A	321_E	0.754	0.54
336_E	341_Y	0.751	0.54
325_T	329_R	0.750	0.53
339_A	345_L	0.747	0.53
137_K	221_D	0.745	0.53
337_D	346_K	0.743	0.53
332_E	339_A	0.742	0.53
27_A	31_V	0.735	0.52
150_E	164_T	0.735	0.52
339_A	343_E	0.733	0.52
328_R	333_M	0.732	0.52
113_K	168_V	0.730	0.52
292_Y	321_E	0.726	0.51
121_L	171_G	0.722	0.51
325_T	328_R	0.721	0.51
92_D	150_E	0.718	0.50
36_E	184_H	0.715	0.50
92_D	164_T	0.712	0.50
274_K	293_Y	0.710	0.50
96_L	110_I	0.710	0.50
11_E	86_D	0.708	0.49
214_V	217_G	0.707	0.49
194_D	197_K	0.704	0.49
127_R	131_L	0.703	0.49
327_Y	333_M	0.702	0.49
176_R	179_I	0.702	0.49
13_V	113_K	0.699	0.48
29_G	87_V	0.698	0.48
257_T	321_E	0.694	0.48
57_P	228_R	0.693	0.48
164_T	189_V	0.692	0.48
41_A	46_R	0.692	0.48
9_Y	84_L	0.691	0.48
133_K	219_G	0.689	0.47
34_A	41_A	0.689	0.47
137_K	140_F	0.682	0.47
26_I	64_I	0.682	0.47
99_V	230_L	0.681	0.47
34_A	52_E	0.680	0.47
73_L	77_S	0.679	0.46
321_E	336_E	0.675	0.46
77_S	294_D	0.674	0.46
339_A	346_K	0.673	0.46
262_R	321_E	0.672	0.46
255_R	258_T	0.672	0.46
22_L	26_I	0.670	0.46
94_T	98_G	0.670	0.46
82_P	285_F	0.669	0.45
284_C	332_E	0.669	0.45
116_S	143_T	0.668	0.45
140_F	218_E	0.667	0.45
332_E	340_K	0.666	0.45
330_P	338_K	0.666	0.45
327_Y	331_Y	0.663	0.45
337_D	344_W	0.663	0.45
89_I	164_T	0.661	0.45
43_S	59_K	0.659	0.45
48_G	52_E	0.659	0.45
117_N	313_K	0.657	0.44
297_Y	321_E	0.655	0.44
325_T	339_A	0.653	0.44
248_K	252_L	0.650	0.44
44_F	81_E	0.647	0.43
74_I	80_V	0.647	0.43
132_L	215_M	0.646	0.43
266_D	313_K	0.643	0.43
328_R	335_K	0.641	0.43
323_M	334_W	0.641	0.43
325_T	330_P	0.641	0.43
141_N	213_T	0.641	0.43
186_L	202_V	0.640	0.43
113_K	116_S	0.637	0.42
269_T	317_V	0.634	0.42
313_K	317_V	0.633	0.42
34_A	56_V	0.633	0.42
11_E	142_W	0.631	0.42
125_T	322_S	0.629	0.42
334_W	345_L	0.627	0.41
110_I	305_I	0.626	0.41
294_D	334_W	0.626	0.41
156_L	180_I	0.623	0.41
193_Q	200_S	0.622	0.41
333_M	344_W	0.622	0.41
292_Y	331_Y	0.620	0.41
330_P	336_E	0.618	0.41
202_V	296_A	0.616	0.40
268_D	317_V	0.615	0.40
235_M	240_V	0.613	0.40
24_K	195_A	0.611	0.40
255_R	299_Y	0.609	0.40
327_Y	340_K	0.607	0.40
320_D	323_M	0.605	0.39
26_I	29_G	0.603	0.39
93_D	148_K	0.601	0.39
271_I	312_V	0.598	0.39
11_E	115_K	0.597	0.39
52_E	254_K	0.595	0.38
128_I	131_L	0.595	0.38
239_T	242_P	0.593	0.38
34_A	37_M	0.592	0.38
170_G	189_V	0.591	0.38
255_R	259_K	0.591	0.38
139_D	147_I	0.591	0.38
166_E	275_L	0.588	0.38
156_L	205_A	0.588	0.38
132_L	140_F	0.587	0.38
241_I	248_K	0.587	0.38
336_E	345_L	0.587	0.38
205_A	208_S	0.586	0.38
264_T	267_F	0.585	0.37
121_L	189_V	0.585	0.37
214_V	218_E	0.585	0.37
156_L	186_L	0.584	0.37
261_E	307_A	0.584	0.37
278_V	309_V	0.584	0.37
22_L	89_I	0.581	0.37
45_G	60_Y	0.581	0.37
87_V	171_G	0.580	0.37
156_L	200_S	0.580	0.37
22_L	172_L	0.579	0.37
284_C	292_Y	0.578	0.37
29_G	121_L	0.577	0.37
243_A	246_R	0.576	0.37
127_R	217_G	0.575	0.37
87_V	164_T	0.575	0.37
245_P	248_K	0.575	0.37
192_K	290_D	0.574	0.36
174_K	207_S	0.573	0.36
88_I	96_L	0.572	0.36
179_I	202_V	0.570	0.36
130_E	133_K	0.569	0.36
41_A	54_N	0.569	0.36
124_S	130_E	0.569	0.36
85_V	91_L	0.568	0.36
59_K	230_L	0.568	0.36
200_S	203_R	0.564	0.36
96_L	135_I	0.562	0.35
296_A	301_V	0.559	0.35
205_A	228_R	0.558	0.35
285_F	295_I	0.557	0.35
288_T	338_K	0.555	0.35
148_K	230_L	0.555	0.35
266_D	323_M	0.555	0.35
26_I	89_I	0.554	0.35
171_G	209_V	0.552	0.34
249_R	253_F	0.551	0.34
127_R	212_R	0.551	0.34
84_L	98_G	0.550	0.34
152_S	158_A	0.549	0.34
273_C	276_C	0.549	0.34
271_I	297_Y	0.548	0.34
330_P	340_K	0.548	0.34
137_K	215_M	0.546	0.34
324_F	327_Y	0.546	0.34
283_E	295_I	0.544	0.34
92_D	277_W	0.544	0.34
173_A	195_A	0.543	0.34
141_N	155_G	0.542	0.34
129_N	154_S	0.542	0.34
266_D	312_V	0.541	0.33
199_V	204_E	0.541	0.33
21_R	25_Y	0.540	0.33
67_G	73_L	0.539	0.33
220_I	329_R	0.537	0.33
332_E	342_K	0.536	0.33
275_L	312_V	0.536	0.33
240_V	246_R	0.536	0.33
148_K	278_V	0.535	0.33
326_D	330_P	0.535	0.33
159_F	165_M	0.534	0.33
186_L	330_P	0.533	0.33
30_I	41_A	0.533	0.33
51_P	302_G	0.532	0.33
54_N	113_K	0.531	0.33
77_S	246_R	0.530	0.33
197_K	202_V	0.530	0.33
9_Y	294_D	0.529	0.32
257_T	296_A	0.528	0.32
176_R	271_I	0.528	0.32
33_T	283_E	0.528	0.32
80_V	272_K	0.526	0.32
165_M	173_A	0.526	0.32
33_T	37_M	0.525	0.32
331_Y	339_A	0.525	0.32
133_K	217_G	0.524	0.32
202_V	208_S	0.524	0.32
330_P	335_K	0.523	0.32
83_D	328_R	0.521	0.32
43_S	90_V	0.521	0.32
89_I	172_L	0.521	0.32
312_V	317_V	0.520	0.32
36_E	39_R	0.518	0.31
296_A	329_R	0.518	0.31
167_K	295_I	0.517	0.31
334_W	339_A	0.517	0.31
9_Y	83_D	0.517	0.31
246_R	284_C	0.517	0.31
148_K	245_P	0.516	0.31
298_D	321_E	0.515	0.31
26_I	60_Y	0.515	0.31
121_L	166_E	0.513	0.31
155_G	196_N	0.513	0.31
149_T	312_V	0.513	0.31
120_M	145_G	0.512	0.31
331_Y	342_K	0.512	0.31
53_R	58_A	0.512	0.31
328_R	334_W	0.512	0.31
323_M	327_Y	0.511	0.31
202_V	292_Y	0.511	0.31
269_T	316_I	0.511	0.31
277_W	293_Y	0.511	0.31
67_G	141_N	0.511	0.31
135_I	144_L	0.510	0.31
168_V	189_V	0.510	0.31
84_L	116_S	0.509	0.31
156_L	199_V	0.508	0.31
242_P	278_V	0.506	0.30
232_W	235_M	0.504	0.30
127_R	210_D	0.504	0.30
335_K	345_L	0.503	0.30
336_E	344_W	0.502	0.30
306_C	310_C	0.502	0.30
303_C	306_C	0.502	0.30
300_C	310_C	0.502	0.30
300_C	306_C	0.502	0.30
300_C	303_C	0.502	0.30
280_C	306_C	0.502	0.30
303_C	310_C	0.502	0.30
280_C	310_C	0.502	0.30
280_C	300_C	0.502	0.30
280_C	303_C	0.502	0.30
152_S	160_K	0.501	0.30
11_E	59_K	0.500	0.30
232_W	237_E	0.500	0.30

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2c42A	2	0.9339	100	0.434	Contact Map
5c4iB	1	0.7851	100	0.585	Contact Map
2raaA	1	0.4793	100	0.721	Contact Map
3on3A	2	0.4711	100	0.747	Contact Map
3g2eA	4	0.4959	100	0.755	Contact Map
1hfeL	2	0.3333	99.4	0.884	Contact Map
1bc6A	1	0.2011	99.4	0.888	Contact Map
1gteA	4	0.8678	99.4	0.889	Contact Map
1jnrB	1	0.2727	99.3	0.89	Contact Map
1h98A	1	0.2011	99.3	0.891	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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