Q7LX68 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q7LX68 - Pyruvate synthase beta chain (Pyruvic-ferredoxin oxidoreductase beta chain) (PorB-like)

UniProt:	Q7LX68	Sequences: MVEKELEEKVYKSIIKTIKDTPLEEFYTSGHRTCQGCESALVMRFLAKAAGPRTIVIGATGCMYVANTTYYTTSWIVPWVHTQLGGTGAAALGTAAALRALMRKGKIKQEPINVIAFCGDLGCADMGLSGVSNAMTYDYNLLIILYDNESSANTDIQETSMTPFGAQTSFSRPGKQRRIMKKRWKKSVVPMIIAGHRNVRYAATMTPAYPLDSMNKIRKALTIGGPTFIHSLDPCPKGWDYDPKFSHELGVLAVETGLWPLYEYIDGEIVYNEPTKSIVEGRMKRKPVKEYLEKQGRFSHFTEEDIEYVQRMVDEMYEEWEIPGVMPIKSINAKISDK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	338 (300)
Sequences:	1784 (890)
Seq/√Len:	51.4

ECOLI - NIFJ
HALSA - F2Z6I7 Q9HRZ6
SULSO - Q7LX68 Q97YV0 Q97V79 Q97V20

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
140_N	224_G	5.479	1.00
190_P	262_Y	4.744	1.00
205_M	213_S	3.897	1.00
142_L	227_T	3.464	1.00
222_T	267_G	3.359	1.00
28_T	66_A	3.162	1.00
245_F	248_E	3.006	1.00
249_L	294_K	2.991	1.00
43_M	117_F	2.887	1.00
222_T	265_I	2.629	1.00
134_A	141_L	2.502	1.00
289_K	310_Q	2.482	1.00
135_M	193_I	2.365	1.00
95_A	99_R	2.350	1.00
256_T	286_K	2.342	1.00
317_Y	321_E	2.335	1.00
162_T	166_A	2.299	1.00
43_M	146_Y	2.262	1.00
310_Q	314_D	2.250	1.00
46_L	217_I	2.214	1.00
240_D	296_G	2.179	1.00
149_E	185_K	2.173	1.00
131_V	143_I	2.171	1.00
100_A	103_R	2.169	1.00
116_A	141_L	2.078	1.00
91_A	116_A	1.977	1.00
55_I	98_L	1.972	1.00
251_V	255_E	1.966	1.00
206_T	250_G	1.962	1.00
46_L	117_F	1.948	0.99
218_R	222_T	1.945	0.99
313_V	317_Y	1.928	0.99
212_D	216_K	1.894	0.99
135_M	143_I	1.883	0.99
234_P	246_S	1.875	0.99
308_Y	311_R	1.875	0.99
315_E	319_E	1.856	0.99
176_Q	308_Y	1.835	0.99
205_M	217_I	1.829	0.99
193_I	228_F	1.823	0.99
249_L	295_Q	1.818	0.99
252_L	294_K	1.806	0.99
164_F	319_E	1.785	0.99
276_K	279_V	1.759	0.99
205_M	231_S	1.739	0.99
311_R	314_D	1.722	0.99
207_P	247_H	1.711	0.99
99_R	139_Y	1.685	0.99
268_E	273_E	1.665	0.98
257_G	285_R	1.644	0.98
289_K	317_Y	1.640	0.98
316_M	320_W	1.637	0.98
265_I	268_E	1.631	0.98
206_T	254_V	1.621	0.98
147_D	185_K	1.606	0.98
55_I	114_V	1.586	0.98
117_F	146_Y	1.565	0.98
60_T	81_H	1.555	0.97
239_W	242_D	1.546	0.97
253_A	291_Y	1.545	0.97
145_L	228_F	1.543	0.97
293_E	302_T	1.537	0.97
39_S	146_Y	1.522	0.97
190_P	228_F	1.516	0.97
296_G	300_H	1.506	0.97
58_G	79_W	1.503	0.97
46_L	144_I	1.501	0.97
187_S	191_M	1.499	0.97
138_D	226_P	1.497	0.97
313_V	320_W	1.489	0.97
317_Y	320_W	1.486	0.97
237_K	242_D	1.470	0.96
289_K	293_E	1.434	0.96
57_I	91_A	1.423	0.96
106_K	110_E	1.411	0.95
173_P	176_Q	1.410	0.95
80_V	90_A	1.409	0.95
237_K	240_D	1.406	0.95
100_A	104_K	1.402	0.95
254_V	261_L	1.393	0.95
142_L	221_L	1.388	0.95
287_P	290_E	1.369	0.95
135_M	226_P	1.365	0.95
213_S	217_I	1.361	0.95
318_E	322_I	1.358	0.94
105_G	109_Q	1.355	0.94
144_I	229_I	1.350	0.94
216_K	263_E	1.340	0.94
207_P	213_S	1.338	0.94
50_A	221_L	1.331	0.94
272_N	275_T	1.317	0.93
92_L	139_Y	1.308	0.93
255_E	285_R	1.289	0.93
148_N	152_A	1.284	0.93
255_E	286_K	1.272	0.92
66_A	146_Y	1.271	0.92
57_I	94_T	1.263	0.92
269_I	322_I	1.259	0.92
43_M	66_A	1.245	0.91
60_T	65_V	1.231	0.91
185_K	204_T	1.231	0.91
94_T	114_V	1.229	0.91
256_T	287_P	1.227	0.91
191_M	326_M	1.217	0.90
91_A	114_V	1.214	0.90
124_A	161_M	1.192	0.89
267_G	278_I	1.192	0.89
287_P	317_Y	1.185	0.89
265_I	278_I	1.183	0.89
206_T	232_L	1.181	0.89
268_E	271_Y	1.176	0.89
33_T	40_A	1.168	0.89
60_T	64_Y	1.167	0.88
50_A	142_L	1.167	0.88
281_G	284_K	1.166	0.88
46_L	54_T	1.165	0.88
64_Y	86_G	1.156	0.88
288_V	316_M	1.144	0.87
98_L	114_V	1.142	0.87
87_T	116_A	1.138	0.87
217_I	229_I	1.138	0.87
44_R	48_K	1.130	0.87
219_K	265_I	1.126	0.87
43_M	47_A	1.114	0.86
190_P	204_T	1.112	0.86
95_A	139_Y	1.106	0.86
71_Y	84_L	1.106	0.86
104_K	108_K	1.102	0.85
258_L	288_V	1.101	0.85
258_L	291_Y	1.095	0.85
42_V	231_S	1.087	0.85
267_G	270_V	1.086	0.85
321_E	325_V	1.082	0.84
100_A	107_I	1.071	0.84
268_E	278_I	1.070	0.84
314_D	318_E	1.070	0.84
313_V	316_M	1.059	0.83
101_L	105_G	1.056	0.83
193_I	202_A	1.056	0.83
241_Y	245_F	1.055	0.83
314_D	317_Y	1.051	0.83
65_V	81_H	1.046	0.82
84_L	126_M	1.043	0.82
55_I	94_T	1.043	0.82
50_A	115_I	1.042	0.82
113_N	221_L	1.042	0.82
135_M	228_F	1.041	0.82
108_K	111_P	1.032	0.81
302_T	313_V	1.031	0.81
223_I	227_T	1.031	0.81
224_G	267_G	1.029	0.81
284_K	287_P	1.025	0.81
105_G	108_K	1.024	0.81
64_Y	81_H	1.024	0.81
279_V	283_M	1.021	0.81
249_L	252_L	1.016	0.80
60_T	79_W	1.005	0.80
27_Y	67_N	0.999	0.79
315_E	318_E	0.998	0.79
286_K	290_E	0.998	0.79
128_L	192_I	0.997	0.79
280_E	283_M	0.990	0.79
38_E	41_L	0.989	0.79
290_E	293_E	0.988	0.78
191_M	327_P	0.988	0.78
190_P	202_A	0.987	0.78
244_K	248_E	0.985	0.78
115_I	221_L	0.971	0.77
164_F	315_E	0.966	0.77
82_T	90_A	0.959	0.76
280_E	284_K	0.959	0.76
301_F	309_V	0.953	0.76
246_S	250_G	0.946	0.75
47_A	75_W	0.942	0.75
83_Q	86_G	0.938	0.75
63_M	146_Y	0.935	0.75
167_Q	301_F	0.932	0.74
288_V	320_W	0.931	0.74
311_R	315_E	0.931	0.74
191_M	194_A	0.930	0.74
204_T	230_H	0.926	0.74
97_A	101_L	0.925	0.74
203_A	216_K	0.924	0.74
43_M	75_W	0.923	0.74
289_K	314_D	0.921	0.73
302_T	310_Q	0.920	0.73
101_L	104_K	0.919	0.73
305_D	308_Y	0.909	0.72
123_C	145_L	0.909	0.72
131_V	135_M	0.905	0.72
242_D	245_F	0.904	0.72
54_T	113_N	0.895	0.71
252_L	255_E	0.891	0.71
115_I	142_L	0.891	0.71
241_Y	252_L	0.890	0.71
56_V	117_F	0.889	0.71
177_R	199_V	0.880	0.70
318_E	321_E	0.878	0.70
138_D	199_V	0.878	0.70
68_T	86_G	0.877	0.70
147_D	230_H	0.877	0.70
95_A	114_V	0.872	0.69
167_Q	300_H	0.872	0.69
158_E	171_S	0.863	0.68
292_L	298_F	0.857	0.68
161_M	185_K	0.857	0.68
31_H	44_R	0.854	0.68
322_I	326_M	0.852	0.67
260_P	324_G	0.850	0.67
288_V	298_F	0.850	0.67
57_I	116_A	0.843	0.67
41_L	247_H	0.839	0.66
113_N	140_N	0.835	0.66
136_T	158_E	0.833	0.66
248_E	252_L	0.832	0.66
320_W	327_P	0.830	0.65
60_T	86_G	0.827	0.65
241_Y	294_K	0.822	0.65
33_T	66_A	0.821	0.65
278_I	281_G	0.819	0.64
185_K	258_L	0.813	0.64
194_A	264_Y	0.811	0.64
289_K	303_E	0.810	0.64
149_E	291_Y	0.809	0.63
238_G	242_D	0.807	0.63
223_I	267_G	0.806	0.63
42_V	233_D	0.803	0.63
28_T	43_M	0.802	0.63
204_T	262_Y	0.799	0.62
252_L	295_Q	0.799	0.62
135_M	200_R	0.794	0.62
102_M	106_K	0.793	0.62
288_V	292_L	0.791	0.62
117_F	144_I	0.790	0.62
194_A	262_Y	0.789	0.61
279_V	285_R	0.788	0.61
280_E	285_R	0.784	0.61
212_D	263_E	0.784	0.61
254_V	291_Y	0.776	0.60
132_S	196_H	0.774	0.60
65_V	91_A	0.770	0.60
107_I	110_E	0.769	0.59
255_E	287_P	0.768	0.59
268_E	276_K	0.766	0.59
82_T	86_G	0.761	0.59
144_I	217_I	0.751	0.58
310_Q	317_Y	0.750	0.58
46_L	213_S	0.750	0.58
124_A	160_S	0.750	0.58
237_K	241_Y	0.746	0.57
145_L	189_V	0.746	0.57
293_E	313_V	0.743	0.57
289_K	302_T	0.740	0.57
124_A	230_H	0.738	0.56
34_C	37_C	0.737	0.56
310_Q	313_V	0.735	0.56
241_Y	249_L	0.726	0.55
91_A	141_L	0.726	0.55
104_K	107_I	0.724	0.55
213_S	231_S	0.720	0.54
59_A	118_C	0.718	0.54
31_H	40_A	0.718	0.54
81_H	90_A	0.717	0.54
60_T	75_W	0.715	0.54
31_H	81_H	0.710	0.53
296_G	318_E	0.708	0.53
256_T	322_I	0.703	0.53
279_V	284_K	0.703	0.53
34_C	235_C	0.699	0.52
64_Y	75_W	0.698	0.52
121_L	159_T	0.697	0.52
187_S	190_P	0.695	0.52
289_K	292_L	0.694	0.52
25_E	76_I	0.694	0.52
165_G	319_E	0.693	0.52
204_T	260_P	0.693	0.52
288_V	313_V	0.688	0.51
62_C	235_C	0.688	0.51
316_M	319_E	0.687	0.51
309_V	313_V	0.686	0.51
31_H	35_Q	0.684	0.51
109_Q	112_I	0.684	0.51
150_S	168_T	0.679	0.50
310_Q	318_E	0.677	0.50
60_T	84_L	0.676	0.50
67_N	81_H	0.676	0.50
106_K	141_L	0.676	0.50
264_Y	299_S	0.673	0.50
309_V	316_M	0.673	0.50
271_Y	274_P	0.671	0.49
302_T	309_V	0.667	0.49
256_T	316_M	0.667	0.49
202_A	228_F	0.666	0.49
150_S	156_I	0.664	0.49
252_L	286_K	0.664	0.49
20_D	214_M	0.661	0.48
57_I	90_A	0.661	0.48
149_E	161_M	0.657	0.48
61_G	86_G	0.654	0.48
201_Y	219_K	0.654	0.48
88_G	130_G	0.651	0.47
234_P	250_G	0.650	0.47
306_I	309_V	0.648	0.47
24_E	191_M	0.648	0.47
163_P	166_A	0.646	0.47
248_E	255_E	0.645	0.47
137_Y	199_V	0.644	0.47
162_T	168_T	0.641	0.46
149_E	204_T	0.640	0.46
173_P	177_R	0.639	0.46
92_L	137_Y	0.638	0.46
54_T	102_M	0.637	0.46
206_T	261_L	0.636	0.46
252_L	316_M	0.635	0.46
293_E	310_Q	0.635	0.46
73_T	101_L	0.630	0.45
69_T	72_T	0.629	0.45
210_P	247_H	0.628	0.45
245_F	294_K	0.627	0.45
55_I	78_P	0.627	0.45
319_E	322_I	0.625	0.45
64_Y	68_T	0.624	0.45
70_Y	73_T	0.624	0.45
185_K	291_Y	0.623	0.44
318_E	326_M	0.620	0.44
293_E	299_S	0.619	0.44
154_T	235_C	0.612	0.43
324_G	327_P	0.611	0.43
95_A	141_L	0.607	0.43
109_Q	209_Y	0.606	0.43
173_P	308_Y	0.603	0.42
307_E	311_R	0.598	0.42
156_I	240_D	0.598	0.42
87_T	161_M	0.597	0.42
128_L	195_G	0.596	0.42
116_A	131_V	0.596	0.42
100_A	108_K	0.596	0.42
53_R	113_N	0.595	0.42
302_T	306_I	0.594	0.41
103_R	267_G	0.593	0.41
41_L	45_F	0.593	0.41
123_C	143_I	0.592	0.41
21_T	45_F	0.590	0.41
140_N	223_I	0.589	0.41
203_A	225_G	0.589	0.41
167_Q	173_P	0.586	0.41
108_K	112_I	0.585	0.41
158_E	161_M	0.585	0.41
191_M	250_G	0.582	0.40
200_R	223_I	0.578	0.40
202_A	229_I	0.578	0.40
192_I	195_G	0.576	0.40
92_L	95_A	0.576	0.40
118_C	143_I	0.575	0.40
60_T	68_T	0.575	0.40
161_M	292_L	0.574	0.39
321_E	326_M	0.573	0.39
271_Y	275_T	0.571	0.39
210_P	214_M	0.571	0.39
307_E	315_E	0.569	0.39
61_G	83_Q	0.568	0.39
184_W	195_G	0.566	0.39
299_S	303_E	0.566	0.39
288_V	326_M	0.565	0.39
282_R	285_R	0.564	0.38
214_M	218_R	0.563	0.38
208_A	254_V	0.563	0.38
106_K	319_E	0.562	0.38
192_I	200_R	0.561	0.38
189_V	230_H	0.561	0.38
199_V	264_Y	0.561	0.38
72_T	114_V	0.559	0.38
87_T	141_L	0.557	0.38
214_M	217_I	0.556	0.38
194_A	269_I	0.553	0.37
69_T	105_G	0.552	0.37
45_F	213_S	0.551	0.37
167_Q	172_R	0.551	0.37
80_V	94_T	0.550	0.37
56_V	75_W	0.550	0.37
268_E	272_N	0.548	0.37
314_D	323_P	0.548	0.37
219_K	263_E	0.546	0.37
147_D	161_M	0.545	0.37
288_V	317_Y	0.545	0.37
61_G	79_W	0.544	0.37
87_T	123_C	0.543	0.36
89_A	130_G	0.543	0.36
142_L	217_I	0.543	0.36
125_D	153_N	0.542	0.36
283_M	321_E	0.541	0.36
94_T	97_A	0.540	0.36
50_A	113_N	0.540	0.36
53_R	259_W	0.540	0.36
302_T	315_E	0.537	0.36
164_F	184_W	0.536	0.36
165_G	308_Y	0.536	0.36
45_F	214_M	0.536	0.36
126_M	155_D	0.536	0.36
184_W	319_E	0.535	0.36
156_I	166_A	0.533	0.35
166_A	298_F	0.533	0.35
313_V	319_E	0.532	0.35
110_E	311_R	0.532	0.35
116_A	143_I	0.531	0.35
234_P	239_W	0.530	0.35
21_T	24_E	0.530	0.35
34_C	62_C	0.529	0.35
248_E	251_V	0.527	0.35
121_L	155_D	0.526	0.35
56_V	273_E	0.525	0.35
50_A	54_T	0.525	0.35
22_P	44_R	0.524	0.35
148_N	276_K	0.523	0.35
53_R	110_E	0.523	0.35
311_R	321_E	0.522	0.34
53_R	78_P	0.522	0.34
312_M	317_Y	0.522	0.34
98_L	101_L	0.521	0.34
51_G	54_T	0.521	0.34
57_I	87_T	0.521	0.34
194_A	215_N	0.521	0.34
69_T	140_N	0.520	0.34
48_K	214_M	0.518	0.34
302_T	317_Y	0.517	0.34
294_K	298_F	0.516	0.34
143_I	200_R	0.515	0.34
64_Y	79_W	0.513	0.34
194_A	251_V	0.513	0.34
215_N	218_R	0.513	0.34
222_T	273_E	0.512	0.34
124_A	145_L	0.509	0.33
278_I	282_R	0.508	0.33
65_V	68_T	0.508	0.33
50_A	217_I	0.508	0.33
319_E	323_P	0.507	0.33
211_L	215_N	0.507	0.33
239_W	295_Q	0.505	0.33
306_I	312_M	0.505	0.33
47_A	67_N	0.505	0.33
156_I	167_Q	0.505	0.33
315_E	322_I	0.503	0.33
314_D	325_V	0.503	0.33
173_P	305_D	0.503	0.33
24_E	101_L	0.502	0.33
39_S	63_M	0.502	0.33
101_L	325_V	0.502	0.33
39_S	232_L	0.501	0.33
58_G	64_Y	0.500	0.32
252_L	290_E	0.500	0.32

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2c42A	2	0.9734	100	0.348	Contact Map
5c4iC	2	0.9083	100	0.525	Contact Map
4kgdA	4	0.7485	99.9	0.775	Contact Map
1v5eA	4	0.7515	99.9	0.791	Contact Map
2panA	3	0.7426	99.9	0.809	Contact Map
4rjjA	5	0.6509	99.8	0.817	Contact Map
1ybhA	4	0.6923	99.8	0.82	Contact Map
1w85A	2	0.8136	99.8	0.821	Contact Map
4k9qA	4	0.6065	99.8	0.824	Contact Map
1umdA	2	0.7899	99.8	0.824	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.01 seconds.