Q7LX64 - SULSO - GREMLIN Contacts

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Q7LX64 - ABC transporter, ATP binding protein

UniProt:	Q7LX64	Sequences: MRRLLKMRNVAIKAINLTKRFGKFVAVDHINFEVYEGEIFGFLGPNGAGKSTTIKMLTTVLKPSEGTATVSGYDVIKQPALVRQSIGVVPQEYTADEDLTGWENMMMMAGLYGIPKRIAEERAKELLEMVELTYAAKRKVETYSGGMRRRLEIAMSLISRPRILFLDEPTLGLDAQTRAAIWQYIMKLKEEYKMTIFVTTHYLEEADMYGDRIAIIDKGKILAIGSPKELKEKVGGDVVSLQTSNDELAIKIISSSKDGILDVRKASDGIRIKVRNGEEKAPEILESLVKNGIKVSRMSITEPTMDEVYMEFTGKSLRDEEASAQEMFAFRRTMRRART	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	339 (268)
Sequences:	30020 (21315)
Seq/√Len:	1302.0

ECOLI - PROV YADG METN POTG FBPC CYSA MALK POTA YDCT YCJV UGPC MODC DPPF RBSA ARAG YEHX MACB OPPD OPPF DDPD UUP SAPD YHES DPPD GSIA DDPF MLAF FEPC LSRA HISP YTFR FHUC TAUB SAPF SSUB MDLB NIKE CYDC FECE YECC YHDZ MDLA PHNC MSBA GLNQ YPHE LPTB YOJI CYDD GLTL LIVG PHNK XYLG ETTA ARTP PSTB LIVF MODF FTSE ALSA SUFC ZNUC LOLD THIQ MGLA FETA BTUD YBBA NIKD PHNL CCMA YDDA YEJF YBHF YNJD YBIT YHIH
BACSU - YVRA OPUCA YFIL OPUAA OPUBA METN YDBJ YXLF YURJ YHCH YCBN TAGH YHAQ MSMX YVFR OPPD YKFD APPF APPD DPPD RBSA OPPF YFMR YTRB YDIF YKPA ECFA1 YFMM YUSV TCYN YFMF FHUC ECSA YFIC YCLP YHEH YFIB YLMA YGAD SUFC ECFA2 YKNV SUNT NATA YXEO YTLC YWJA PSTB1 SKFE YKNU BCEA BMRA YXDL CYDD GLNQ TCYC YHEI YKOD YVCR ARTM FTSE PSTB2 YJKB CYDC SSUB ALBC YTHP YVRO MNTB YKNY YHCG ZNUC YYBJ EXPZ YCLH YUFO YTRE YYDI
HALSA - BTUDA Q9HMX3 Q9HMW0 Q9HMU8 Q9HHQ5 Q9HNZ9 Q9HR06 Q9HRJ6 Q9HMT3 Q9HMX2 Q9HRH8 Q9HMG1 PSTB2 Q9HHM2 Q9HMG6 PHNC Q9HSQ7 Q9HNY3 Q9HRZ9 Y2317 PSTB1 Y1631 Q9HRV7 Q9HR96 Q9HHR7 Q9HS04 Q9HQA8 Q9HR21 Q9HT03 Q9HMC1 Q9HMW1
SULSO - Q7LX64 Q97UF2 Q97UY8 Q97ZC0 Q97VH6 Q97YY4 Q97X18 Q97VC1 Q97YK2 Q97VF5 Q97UH3 Q97YP7 Q97VK8 Q97YP3 Q97VK9 Q97YQ7 Q97VF4 Q97YP8 Q97UJ9 Q97UD4 Q97U54 Q97Z03 Q97UH4 PSTB Q980W0 Q7LY07 Q97W42 Q97V00 Y2030 Q7LXM4 Q97V01 Y1893 Q97VM2 Q97VY4 Q7LX80 Q97Z56 Q97UG5 Q97YP4 Q97Z96 Q97UC2 Q980K5 Q97ZU0 Q980E6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
38_E	212_R	3.865	1.00
25_V	28_D	3.788	1.00
16_N	29_H	3.692	1.00
13_K	33_E	3.167	1.00
40_F	214_A	3.147	1.00
15_I	67_T	3.022	1.00
85_S	162_R	2.936	1.00
225_G	229_E	2.916	1.00
20_R	25_V	2.857	1.00
14_A	17_L	2.839	1.00
101_G	143_Y	2.824	1.00
207_D	228_K	2.746	1.00
41_G	210_G	2.730	1.00
18_T	65_E	2.667	1.00
19_K	56_M	2.589	1.00
28_D	220_K	2.499	1.00
13_K	69_T	2.392	1.00
188_L	194_M	2.331	1.00
35_Y	38_E	2.330	1.00
18_T	25_V	2.220	1.00
54_I	199_T	2.195	1.00
135_A	138_R	2.181	1.00
138_R	142_T	2.164	1.00
36_E	162_R	2.161	1.00
18_T	29_H	2.153	1.00
226_S	229_E	2.131	1.00
102_W	136_A	2.127	1.00
17_L	63_P	2.113	1.00
200_T	206_A	2.040	1.00
54_I	165_F	2.028	1.00
214_A	221_I	2.000	1.00
19_K	64_S	1.966	1.00
115_P	118_I	1.954	1.00
212_R	224_I	1.910	1.00
16_N	31_N	1.888	1.00
186_M	208_M	1.881	1.00
128_E	133_T	1.839	1.00
14_A	32_F	1.814	1.00
160_R	194_M	1.812	1.00
102_W	137_K	1.800	1.00
98_D	141_E	1.721	1.00
15_I	69_T	1.698	1.00
34_V	40_F	1.686	1.00
100_T	103_E	1.683	1.00
122_R	125_E	1.663	1.00
19_K	61_L	1.659	1.00
20_R	64_S	1.632	1.00
102_W	106_M	1.629	1.00
27_V	56_M	1.610	1.00
140_V	151_L	1.577	1.00
127_L	136_A	1.573	1.00
229_E	233_K	1.546	1.00
55_K	60_V	1.542	1.00
32_F	214_A	1.540	1.00
41_G	206_A	1.526	1.00
18_T	28_D	1.476	1.00
287_S	291_N	1.465	1.00
56_M	63_P	1.462	1.00
55_K	61_L	1.452	1.00
124_K	136_A	1.428	1.00
122_R	160_R	1.428	1.00
99_L	104_N	1.419	1.00
130_V	154_A	1.385	1.00
126_L	154_A	1.378	1.00
129_M	187_K	1.367	1.00
104_N	140_V	1.359	1.00
229_E	232_E	1.358	1.00
21_F	26_A	1.358	1.00
71_S	162_R	1.350	1.00
278_E	282_P	1.334	1.00
212_R	223_A	1.324	1.00
91_Q	145_G	1.309	1.00
40_F	224_I	1.290	1.00
58_T	165_F	1.285	1.00
182_W	208_M	1.276	1.00
38_E	211_D	1.264	1.00
99_L	107_M	1.264	1.00
116_K	119_A	1.252	1.00
89_V	156_S	1.218	1.00
15_I	31_N	1.211	1.00
239_V	242_Q	1.207	1.00
42_F	197_F	1.205	1.00
71_S	85_S	1.202	1.00
125_E	129_M	1.196	1.00
139_K	142_T	1.195	1.00
42_F	53_T	1.193	1.00
227_P	231_K	1.184	1.00
102_W	124_K	1.173	1.00
97_E	141_E	1.170	1.00
173_L	181_I	1.156	1.00
30_I	53_T	1.153	1.00
40_F	197_F	1.147	1.00
198_V	210_G	1.142	1.00
272_I	275_R	1.133	1.00
108_M	155_M	1.131	1.00
131_E	180_A	1.123	1.00
104_N	155_M	1.122	1.00
100_T	104_N	1.120	1.00
15_I	33_E	1.114	1.00
14_A	57_L	1.112	1.00
285_L	289_V	1.110	1.00
282_P	285_L	1.105	1.00
240_S	243_T	1.099	1.00
210_G	213_I	1.088	1.00
287_S	290_K	1.087	1.00
240_S	244_S	1.080	1.00
106_M	120_E	1.077	1.00
143_Y	151_L	1.072	1.00
285_L	291_N	1.071	1.00
16_N	65_E	1.069	1.00
133_T	136_A	1.067	1.00
87_G	156_S	1.064	1.00
286_E	290_K	1.059	1.00
87_G	161_P	1.055	1.00
56_M	68_A	1.054	1.00
121_E	125_E	1.038	1.00
214_A	224_I	1.033	1.00
106_M	123_A	1.029	1.00
285_L	288_L	1.023	1.00
271_R	275_R	1.019	1.00
96_D	99_L	1.007	1.00
131_E	134_Y	1.006	1.00
17_L	56_M	1.006	1.00
40_F	212_R	1.004	1.00
228_K	232_E	1.004	1.00
271_R	274_V	1.002	1.00
118_I	121_E	1.002	1.00
48_A	216_I	0.998	1.00
185_I	196_I	0.991	1.00
58_T	88_V	0.988	1.00
178_R	202_Y	0.988	1.00
237_D	240_S	0.986	1.00
20_R	23_K	0.985	1.00
99_L	103_E	0.983	1.00
231_K	234_V	0.981	1.00
35_Y	212_R	0.980	1.00
183_Q	186_M	0.980	1.00
265_K	268_D	0.975	1.00
259_G	262_D	0.975	1.00
257_K	261_L	0.963	1.00
238_V	242_Q	0.957	1.00
182_W	205_E	0.956	1.00
102_W	123_A	0.950	1.00
230_L	234_V	0.946	1.00
124_K	128_E	0.938	1.00
278_E	281_A	0.938	1.00
256_S	259_G	0.929	1.00
179_A	183_Q	0.927	1.00
215_I	230_L	0.920	1.00
109_A	119_A	0.917	1.00
278_E	284_I	0.916	1.00
215_I	234_V	0.914	1.00
164_L	194_M	0.908	1.00
34_V	195_T	0.908	1.00
286_E	289_V	0.906	1.00
276_N	279_E	0.905	1.00
27_V	53_T	0.902	1.00
165_F	197_F	0.901	1.00
183_Q	187_K	0.900	1.00
14_A	68_A	0.897	1.00
118_I	122_R	0.892	1.00
59_T	62_K	0.891	1.00
21_F	52_T	0.887	1.00
217_D	222_L	0.887	1.00
275_R	278_E	0.883	1.00
106_M	110_G	0.883	1.00
263_V	266_A	0.882	1.00
279_E	282_P	0.880	1.00
266_A	270_I	0.874	1.00
45_P	48_A	0.871	1.00
30_I	221_I	0.871	1.00
60_V	90_P	0.869	1.00
19_K	52_T	0.868	1.00
274_V	278_E	0.866	1.00
241_L	244_S	0.862	1.00
283_E	287_S	0.861	1.00
262_D	265_K	0.861	1.00
282_P	286_E	0.860	1.00
126_L	158_I	0.856	1.00
97_E	148_R	0.855	1.00
204_E	208_M	0.852	1.00
27_V	30_I	0.850	1.00
270_I	273_K	0.849	1.00
268_D	271_R	0.848	1.00
261_L	264_R	0.846	1.00
278_E	285_L	0.845	1.00
257_K	260_I	0.842	1.00
213_I	227_P	0.835	1.00
267_S	270_I	0.833	1.00
280_K	283_E	0.832	1.00
163_I	195_T	0.832	1.00
21_F	61_L	0.830	1.00
101_G	151_L	0.823	1.00
105_M	158_I	0.819	1.00
100_T	139_K	0.819	1.00
273_K	277_G	0.818	1.00
207_D	227_P	0.815	1.00
217_D	220_K	0.815	1.00
124_K	132_L	0.815	1.00
120_E	124_K	0.813	1.00
143_Y	147_M	0.812	1.00
11_A	71_S	0.811	1.00
248_L	251_K	0.810	1.00
231_K	235_G	0.806	1.00
239_V	243_T	0.804	1.00
12_I	70_V	0.801	1.00
29_H	65_E	0.799	1.00
116_K	120_E	0.799	1.00
153_I	181_I	0.798	1.00
37_G	195_T	0.796	1.00
95_A	104_N	0.795	1.00
107_M	111_L	0.794	1.00
281_A	285_L	0.785	1.00
284_I	288_L	0.783	1.00
32_F	53_T	0.782	1.00
98_D	139_K	0.781	1.00
126_L	129_M	0.778	1.00
12_I	57_L	0.776	1.00
227_P	230_L	0.776	1.00
56_M	64_S	0.771	1.00
117_R	121_E	0.771	1.00
73_Y	85_S	0.771	1.00
260_I	264_R	0.769	1.00
184_Y	187_K	0.765	1.00
136_A	139_K	0.763	1.00
71_S	163_I	0.762	1.00
225_G	230_L	0.761	1.00
115_P	119_A	0.758	1.00
264_R	267_S	0.758	1.00
277_G	280_K	0.758	1.00
170_T	181_I	0.753	1.00
259_G	263_V	0.750	1.00
106_M	119_A	0.747	1.00
238_V	241_L	0.746	1.00
270_I	274_V	0.744	1.00
17_L	68_A	0.742	1.00
89_V	153_I	0.741	1.00
56_M	61_L	0.740	1.00
198_V	209_Y	0.739	1.00
255_S	259_G	0.731	1.00
233_K	236_G	0.728	1.00
207_D	231_K	0.723	1.00
101_G	104_N	0.723	1.00
12_I	163_I	0.723	1.00
228_K	231_K	0.722	1.00
14_A	53_T	0.721	1.00
96_D	104_N	0.718	1.00
178_R	205_E	0.717	1.00
266_A	269_G	0.716	1.00
122_R	126_L	0.715	1.00
135_A	147_M	0.715	1.00
237_D	241_L	0.714	1.00
280_K	284_I	0.709	1.00
36_E	71_S	0.709	1.00
109_A	112_Y	0.705	1.00
108_M	112_Y	0.701	1.00
284_I	287_S	0.698	1.00
110_G	119_A	0.697	1.00
264_R	268_D	0.694	1.00
249_A	252_I	0.693	1.00
241_L	245_N	0.693	1.00
112_Y	159_S	0.693	1.00
283_E	286_E	0.692	1.00
254_S	257_K	0.691	1.00
242_Q	245_N	0.691	1.00
262_D	266_A	0.686	1.00
221_I	224_I	0.686	1.00
269_G	272_I	0.683	1.00
246_D	250_I	0.683	1.00
180_A	183_Q	0.682	1.00
126_L	130_V	0.682	1.00
258_D	261_L	0.678	1.00
103_E	106_M	0.677	1.00
268_D	272_I	0.673	1.00
256_S	260_I	0.672	1.00
29_H	220_K	0.672	1.00
267_S	271_R	0.671	1.00
70_V	84_Q	0.671	1.00
11_A	36_E	0.670	1.00
245_N	248_L	0.670	1.00
90_P	93_Y	0.670	1.00
109_A	158_I	0.667	1.00
277_G	281_A	0.667	1.00
39_I	196_I	0.660	1.00
253_I	256_S	0.658	1.00
277_G	285_L	0.658	1.00
95_A	140_V	0.657	1.00
265_K	269_G	0.656	1.00
272_I	276_N	0.652	1.00
105_M	127_L	0.652	1.00
168_E	201_H	0.652	1.00
259_G	264_R	0.651	1.00
162_R	194_M	0.648	1.00
123_A	126_L	0.646	1.00
119_A	123_A	0.646	1.00
278_E	291_N	0.644	1.00
270_I	275_R	0.640	1.00
39_I	198_V	0.638	1.00
276_N	280_K	0.637	1.00
274_V	277_G	0.633	1.00
263_V	267_S	0.630	1.00
263_V	268_D	0.630	1.00
106_M	109_A	0.629	1.00
71_S	84_Q	0.627	1.00
234_V	237_D	0.627	1.00
264_R	269_G	0.624	1.00
165_F	199_T	0.624	1.00
264_R	270_I	0.623	1.00
254_S	260_I	0.618	1.00
87_G	159_S	0.618	1.00
258_D	262_D	0.617	1.00
264_R	278_E	0.617	1.00
253_I	257_K	0.616	1.00
63_P	68_A	0.615	1.00
252_I	255_S	0.615	1.00
132_L	135_A	0.615	1.00
20_R	28_D	0.610	1.00
100_T	137_K	0.606	1.00
89_V	149_R	0.605	1.00
124_K	134_Y	0.605	1.00
117_R	120_E	0.603	1.00
51_S	55_K	0.603	1.00
108_M	111_L	0.603	1.00
147_M	150_R	0.602	1.00
163_I	197_F	0.601	1.00
234_V	238_V	0.600	1.00
140_V	148_R	0.600	1.00
236_G	240_S	0.599	1.00
233_K	237_D	0.598	1.00
109_A	113_G	0.598	1.00
265_K	270_I	0.598	1.00
281_A	284_I	0.598	1.00
268_D	273_K	0.594	1.00
186_M	209_Y	0.593	1.00
260_I	263_V	0.592	1.00
93_Y	152_E	0.587	1.00
57_L	165_F	0.587	1.00
87_G	91_Q	0.587	1.00
36_E	193_K	0.585	1.00
281_A	288_L	0.584	1.00
128_E	134_Y	0.584	1.00
111_L	115_P	0.581	1.00
277_G	284_I	0.577	1.00
239_V	244_S	0.576	1.00
261_L	265_K	0.576	1.00
247_E	251_K	0.575	1.00
232_E	235_G	0.575	1.00
275_R	279_E	0.575	1.00
188_L	196_I	0.574	1.00
273_K	276_N	0.572	1.00
102_W	105_M	0.570	1.00
288_L	291_N	0.566	1.00
86_I	163_I	0.560	1.00
28_D	219_G	0.559	1.00
161_P	188_L	0.558	1.00
246_D	249_A	0.557	1.00
19_K	27_V	0.557	1.00
170_T	205_E	0.553	1.00
271_R	291_N	0.552	1.00
270_I	278_E	0.552	1.00
185_I	209_Y	0.549	1.00
198_V	206_A	0.548	1.00
226_S	230_L	0.547	1.00
256_S	263_V	0.546	1.00
206_A	210_G	0.544	1.00
57_L	68_A	0.540	1.00
267_S	272_I	0.539	1.00
150_R	177_T	0.538	1.00
89_V	166_L	0.538	1.00
69_T	73_Y	0.537	1.00
220_K	224_I	0.537	1.00
239_V	245_N	0.536	1.00
125_E	128_E	0.533	1.00
52_T	61_L	0.532	1.00
275_R	285_L	0.530	1.00
17_L	53_T	0.530	1.00
237_D	244_S	0.530	1.00
278_E	283_E	0.529	1.00
94_T	97_E	0.528	1.00
278_E	288_L	0.527	1.00
251_K	254_S	0.525	1.00
11_A	195_T	0.524	1.00
248_L	252_I	0.524	1.00
166_L	169_P	0.523	1.00
22_G	25_V	0.522	1.00
18_T	64_S	0.520	1.00
269_G	273_K	0.520	1.00
119_A	122_R	0.518	1.00
166_L	185_I	0.518	1.00
284_I	291_N	0.518	1.00
247_E	250_I	0.516	1.00
34_V	163_I	0.516	1.00
251_K	255_S	0.510	1.00
20_R	26_A	0.509	1.00
265_K	271_R	0.507	1.00
242_Q	247_E	0.507	1.00
274_V	280_K	0.506	1.00
272_I	285_L	0.505	1.00
54_I	88_V	0.504	1.00
276_N	285_L	0.502	1.00
57_L	197_F	0.501	1.00
267_S	275_R	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
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HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4yerA	2	0.8407	100	0.176	Contact Map
3tuiC	2	0.9705	100	0.229	Contact Map
4rvcA	4	0.708	100	0.244	Contact Map
1vplA	2	0.6962	100	0.244	Contact Map
4u00A	1	0.7021	100	0.248	Contact Map
4ymuJ	2	0.6962	100	0.248	Contact Map
4mkiB	2	0.8112	100	0.249	Contact Map
2oljA	2	0.7021	100	0.252	Contact Map
1b0uA	2	0.7139	100	0.252	Contact Map
1g291	4	0.8437	100	0.258	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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