Q7LX59 - SULSO - GREMLIN Contacts

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Q7LX59 - Second ORF in transposon ISC1316

UniProt:	Q7LX59	Sequences: MVVKLTRSERIYITFVVDHEFPKLPNTGKEVAIDVGIEKLIVTSDGEYFPNLRPLEKALWKVKHLHRELSRKKFLSNNWFKAKVKLARAYEHLKNLRRDLYMKLGKWFAEHYDVAVMEGIHVKQLIGKSLRSLRRRLSDVAFSELRDLIKYQLEKYGKKLILVNPAYTSKTCAKCGYVKEDLSLSDRVFVCPNCGWIADRDYNASLNILRGSG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	213 (201)
Sequences:	4755 (2884)
Seq/√Len:	203.4

ECOLI - INSQ
HALSA - Q9HSD4 Q9HHG8 Q9HSW7 Q9HSY4 Q9HHU6 Q9HSW9 Q9HHJ9 Q9HM87 Q9HSZ6 Q9HHX8
SULSO - Q7LX59 Q97U09 Q97XA4 Q97V53 Q97YF7 Q97XQ8 Q97XP1 Q97Y44 Q97YW4 Q97V25 Q97V47 Q97YI2 Q97Z61 Q97UQ8 Q97U68 Q97YI5 Q97XQ0 Q97XB6 Q97U51 Q97YU1 Q97Y48 Q97X39 Q97Y67 Q97YW9 Q97WZ3 Q97WY6 Q97YK6 Q7LXH2 Q7LXD9 Q7LXH6 Q97YH4 Y2105 Q97XN2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
99_D	103_K	4.660	1.00
173_A	203_N	3.725	1.00
121_H	124_Q	3.367	1.00
153_L	160_L	3.177	1.00
146_R	162_L	2.729	1.00
144_E	148_L	2.621	1.00
106_K	110_E	2.498	1.00
40_L	145_L	2.458	1.00
183_S	186_D	2.448	1.00
126_I	138_S	2.431	1.00
117_M	149_I	2.351	1.00
171_T	178_V	2.204	1.00
59_L	135_R	2.132	1.00
150_K	162_L	2.120	1.00
109_A	153_L	2.094	1.00
167_Y	170_K	2.035	1.00
163_V	208_I	2.025	1.00
168_T	208_I	1.961	1.00
58_A	96_L	1.917	1.00
102_M	151_Y	1.909	1.00
102_M	148_L	1.908	1.00
190_V	197_I	1.878	1.00
170_K	182_L	1.862	1.00
144_E	147_D	1.823	1.00
115_A	153_L	1.814	1.00
131_R	134_R	1.810	1.00
33_I	41_I	1.727	1.00
65_L	82_A	1.724	1.00
98_R	144_E	1.715	1.00
145_L	149_I	1.696	1.00
101_Y	148_L	1.682	1.00
102_M	152_Q	1.668	1.00
105_G	148_L	1.643	1.00
40_L	100_L	1.637	1.00
113_D	158_K	1.607	1.00
102_M	105_G	1.607	1.00
101_Y	144_E	1.595	1.00
117_M	160_L	1.579	1.00
175_C	194_C	1.578	1.00
174_K	196_W	1.547	1.00
187_R	200_R	1.511	1.00
117_M	162_L	1.476	1.00
69_L	83_K	1.471	1.00
172_C	175_C	1.463	1.00
189_F	198_A	1.446	1.00
175_C	191_C	1.436	1.00
191_C	194_C	1.427	1.00
179_K	189_F	1.414	1.00
117_M	146_R	1.405	1.00
150_K	154_E	1.403	1.00
118_E	165_P	1.400	1.00
82_A	86_L	1.394	1.00
72_K	82_A	1.373	1.00
43_T	47_E	1.371	1.00
172_C	194_C	1.354	1.00
172_C	191_C	1.349	1.00
6_T	9_E	1.341	1.00
179_K	182_L	1.336	1.00
189_F	196_W	1.334	1.00
75_L	79_W	1.327	1.00
179_K	192_P	1.317	1.00
39_K	42_V	1.315	1.00
31_V	112_Y	1.308	1.00
30_E	209_L	1.304	1.00
80_F	83_K	1.300	1.00
91_E	95_N	1.290	1.00
77_N	80_F	1.289	1.00
42_V	48_Y	1.268	1.00
10_R	91_E	1.259	1.00
68_E	72_K	1.251	1.00
206_L	210_R	1.238	1.00
65_L	68_E	1.232	1.00
177_Y	192_P	1.231	1.00
119_G	162_L	1.230	1.00
173_A	206_L	1.226	1.00
105_G	151_Y	1.201	1.00
105_G	152_Q	1.192	1.00
30_E	114_V	1.187	1.00
42_V	202_Y	1.185	1.00
121_H	165_P	1.182	1.00
109_A	156_Y	1.174	1.00
8_S	91_E	1.172	1.00
61_K	65_L	1.171	1.00
33_I	43_T	1.170	1.00
107_W	111_H	1.160	1.00
137_L	142_F	1.153	1.00
65_L	89_A	1.136	1.00
182_L	186_D	1.134	1.00
148_L	151_Y	1.129	1.00
188_V	197_I	1.128	1.00
35_V	142_F	1.124	1.00
31_V	43_T	1.117	1.00
62_V	90_Y	1.102	1.00
184_L	187_R	1.092	1.00
105_G	145_L	1.092	1.00
35_V	146_R	1.080	1.00
173_A	198_A	1.056	1.00
32_A	209_L	1.042	1.00
150_K	160_L	1.037	1.00
58_A	93_L	1.028	1.00
101_Y	145_L	1.026	1.00
110_E	156_Y	1.023	1.00
6_T	10_R	1.021	1.00
66_H	70_S	1.016	1.00
98_R	148_L	1.014	1.00
109_A	158_K	1.006	1.00
69_L	86_L	1.002	1.00
37_I	140_V	0.988	1.00
54_P	96_L	0.977	1.00
202_Y	206_L	0.974	1.00
152_Q	155_K	0.971	1.00
177_Y	193_N	0.960	0.99
62_V	86_L	0.960	0.99
10_R	95_N	0.960	0.99
6_T	91_E	0.958	0.99
106_K	156_Y	0.939	0.99
69_L	82_A	0.936	0.99
101_Y	105_G	0.936	0.99
179_K	183_S	0.936	0.99
147_D	150_K	0.931	0.99
153_L	158_K	0.925	0.99
62_V	93_L	0.916	0.99
29_K	113_D	0.906	0.99
165_P	168_T	0.906	0.99
183_S	200_R	0.905	0.99
116_V	208_I	0.905	0.99
182_L	189_F	0.904	0.99
27_T	113_D	0.899	0.99
92_H	96_L	0.893	0.99
114_V	159_K	0.891	0.99
64_H	68_E	0.890	0.99
39_K	48_Y	0.890	0.99
114_V	161_I	0.888	0.99
184_L	200_R	0.887	0.99
183_S	187_R	0.880	0.99
198_A	202_Y	0.880	0.99
30_E	116_V	0.879	0.99
48_Y	199_D	0.878	0.99
198_A	206_L	0.866	0.99
170_K	181_D	0.866	0.99
131_R	138_S	0.858	0.99
126_I	134_R	0.855	0.99
143_S	147_D	0.851	0.99
116_V	161_I	0.845	0.99
94_K	98_R	0.845	0.99
119_G	165_P	0.838	0.99
108_F	115_A	0.836	0.99
66_H	90_Y	0.815	0.98
66_H	86_L	0.810	0.98
170_K	178_V	0.807	0.98
85_K	88_R	0.805	0.98
203_N	207_N	0.803	0.98
202_Y	205_S	0.801	0.98
37_I	136_R	0.801	0.98
101_Y	141_A	0.794	0.98
47_E	107_W	0.787	0.98
187_R	199_D	0.782	0.98
104_L	107_W	0.780	0.98
173_A	204_A	0.778	0.98
75_L	80_F	0.778	0.98
105_G	149_I	0.776	0.98
24_L	27_T	0.766	0.97
24_L	158_K	0.764	0.97
51_N	140_V	0.761	0.97
83_K	87_A	0.761	0.97
55_L	59_L	0.758	0.97
65_L	86_L	0.751	0.97
109_A	115_A	0.751	0.97
26_N	29_K	0.750	0.97
119_G	146_R	0.746	0.97
72_K	78_N	0.745	0.97
65_L	85_K	0.743	0.97
170_K	179_K	0.741	0.97
171_T	207_N	0.740	0.97
122_V	143_S	0.740	0.97
79_W	83_K	0.740	0.97
36_G	42_V	0.739	0.97
95_N	99_D	0.739	0.97
100_L	104_L	0.739	0.97
62_V	70_S	0.737	0.97
173_A	196_W	0.736	0.97
151_Y	155_K	0.734	0.97
186_D	200_R	0.727	0.96
54_P	58_A	0.722	0.96
63_K	66_H	0.718	0.96
44_S	205_S	0.712	0.96
63_K	67_R	0.710	0.96
98_R	102_M	0.706	0.96
37_I	126_I	0.704	0.96
48_Y	202_Y	0.700	0.96
67_R	70_S	0.698	0.96
188_V	198_A	0.693	0.95
55_L	58_A	0.689	0.95
106_K	152_Q	0.689	0.95
116_V	209_L	0.685	0.95
112_Y	115_A	0.683	0.95
110_E	114_V	0.682	0.95
41_I	104_L	0.678	0.95
204_A	207_N	0.675	0.95
122_V	142_F	0.674	0.95
125_L	137_L	0.669	0.94
186_D	189_F	0.668	0.94
69_L	79_W	0.666	0.94
32_A	116_V	0.663	0.94
184_L	199_D	0.663	0.94
62_V	66_H	0.661	0.94
39_K	50_P	0.658	0.94
51_N	54_P	0.658	0.94
133_L	137_L	0.647	0.93
89_A	93_L	0.642	0.93
31_V	115_A	0.639	0.93
103_K	106_K	0.637	0.93
126_I	131_R	0.636	0.93
170_K	183_S	0.634	0.93
182_L	200_R	0.634	0.93
167_Y	178_V	0.631	0.93
68_E	71_R	0.625	0.92
93_L	139_D	0.624	0.92
206_L	209_L	0.623	0.92
21_F	154_E	0.619	0.92
49_F	104_L	0.617	0.92
166_A	170_K	0.616	0.92
40_L	140_V	0.616	0.92
95_N	98_R	0.615	0.92
32_A	44_S	0.615	0.92
133_L	136_R	0.613	0.91
90_Y	97_R	0.610	0.91
40_L	105_G	0.609	0.91
164_N	167_Y	0.609	0.91
35_V	41_I	0.606	0.91
171_T	176_G	0.606	0.91
42_V	49_F	0.602	0.91
58_A	62_V	0.602	0.91
38_E	42_V	0.599	0.91
134_R	138_S	0.598	0.90
97_R	139_D	0.598	0.90
181_D	186_D	0.595	0.90
189_F	200_R	0.595	0.90
67_R	71_R	0.590	0.90
58_A	89_A	0.590	0.90
126_I	132_S	0.587	0.90
21_F	155_K	0.587	0.90
124_Q	165_P	0.587	0.90
61_K	89_A	0.586	0.90
19_H	22_P	0.585	0.89
12_Y	91_E	0.585	0.89
56_E	136_R	0.583	0.89
120_I	165_P	0.583	0.89
167_Y	171_T	0.581	0.89
102_M	106_K	0.580	0.89
72_K	76_S	0.579	0.89
149_I	160_L	0.577	0.89
45_D	112_Y	0.577	0.89
40_L	101_Y	0.575	0.89
174_K	206_L	0.574	0.89
148_L	152_Q	0.574	0.89
115_A	149_I	0.572	0.88
58_A	92_H	0.572	0.88
174_K	198_A	0.568	0.88
198_A	203_N	0.565	0.88
171_T	189_F	0.565	0.88
28_G	113_D	0.562	0.88
43_T	108_F	0.560	0.87
169_S	182_L	0.560	0.87
9_E	91_E	0.560	0.87
175_C	179_K	0.559	0.87
106_K	148_L	0.558	0.87
70_S	86_L	0.557	0.87
32_A	205_S	0.555	0.87
76_S	79_W	0.555	0.87
146_R	150_K	0.553	0.87
179_K	200_R	0.551	0.87
104_L	145_L	0.550	0.86
64_H	67_R	0.548	0.86
31_V	44_S	0.548	0.86
78_N	81_K	0.544	0.86
86_L	90_Y	0.544	0.86
90_Y	94_K	0.542	0.86
124_Q	137_L	0.539	0.85
146_R	160_L	0.538	0.85
105_G	108_F	0.534	0.85
143_S	146_R	0.533	0.85
39_K	199_D	0.530	0.84
19_H	23_K	0.526	0.84
29_K	45_D	0.526	0.84
141_A	144_E	0.526	0.84
80_F	84_V	0.525	0.84
33_I	108_F	0.524	0.84
47_E	50_P	0.523	0.84
177_Y	181_D	0.523	0.84
68_E	82_A	0.522	0.83
6_T	11_I	0.521	0.83
38_E	199_D	0.521	0.83
55_L	135_R	0.520	0.83
63_K	70_S	0.518	0.83
93_L	97_R	0.517	0.83
58_A	61_K	0.514	0.83
182_L	187_R	0.512	0.82
41_I	145_L	0.506	0.82
196_W	203_N	0.502	0.81
25_P	29_K	0.502	0.81
174_K	177_Y	0.500	0.81

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1iv0A	1	0.4554	89.6	0.908	Contact Map
1vq8Z	1	0.3146	86.3	0.913	Contact Map
1vhxA	2	0.6244	84	0.916	Contact Map
4c2mI	1	0.2347	81	0.918	Contact Map
3j20Y	1	0.2347	81	0.919	Contact Map
1vd4A	1	0.2629	80.9	0.919	Contact Map
2k4xA	1	0.2582	80.6	0.919	Contact Map
4aybP	1	0.2019	80.5	0.919	Contact Map
1nu0A	1	0.5915	80	0.919	Contact Map
1qypA	1	0.216	79.8	0.919	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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