GREMLIN Database
CARB - Carbamoyl-phosphate synthase large chain
UniProt: Q59969 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 1051 (1029)
Sequences: 2853 (1170)
Seq/√Len: 36.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
353_T390_S6.9721.00
463_K467_D5.5431.00
224_G271_R4.7251.00
7_K41_E4.5811.00
7_K43_V4.5561.00
286_N289_G4.4611.00
557_L593_L4.3891.00
700_N725_E4.3661.00
102_K122_E4.2681.00
80_R109_Y4.2481.00
678_K812_E4.2371.00
67_V96_V4.2261.00
661_S671_K4.0851.00
860_K865_G4.0671.00
940_L954_A3.8431.00
554_N630_R3.6641.00
153_A190_I3.6401.00
190_I202_V3.6061.00
617_V621_L3.5561.00
437_K441_E3.5041.00
136_E272_S3.3831.00
396_R619_R3.3621.00
216_Y231_C3.3601.00
286_N291_E3.3581.00
913_G918_D3.3521.00
8_V40_I3.3271.00
546_D626_K3.2611.00
937_G963_T3.2011.00
804_E808_N3.1791.00
792_R880_W3.1721.00
73_E108_K3.1281.00
765_N866_L3.1041.00
262_M292_Y3.0811.00
235_L462_I3.0451.00
956_N1034_L3.0301.00
435_A448_V3.0291.00
231_C251_C3.0281.00
77_E109_Y3.0091.00
76_I109_Y2.9951.00
439_F459_L2.9811.00
143_P206_K2.9551.00
866_L869_S2.9081.00
706_V746_I2.8941.00
593_L623_L2.8891.00
40_I325_L2.8881.00
468_F489_L2.8791.00
512_Y625_K2.8561.00
73_E77_E2.8241.00
158_K183_E2.8231.00
154_I187_K2.8081.00
696_K729_Y2.7811.00
796_E800_N2.7661.00
865_G869_S2.7491.00
41_E61_K2.7401.00
761_V861_A2.7281.00
73_E109_Y2.6961.00
760_G806_V2.6691.00
446_N456_E2.6561.00
128_E132_E2.5821.00
439_F445_I2.5711.00
8_V325_L2.5681.00
557_L624_I2.5611.00
391_L432_F2.5301.00
183_E187_K2.5301.00
147_A156_N2.5251.00
421_L447_E2.5231.00
687_I701_E2.5181.00
704_F725_E2.4901.00
884_S923_S2.4701.00
480_K484_K2.4591.00
388_E461_K2.4471.00
149_S152_E2.4201.00
944_N947_L2.3891.00
72_V96_V2.3751.00
157_A162_Y2.3721.00
384_G389_E2.3601.00
682_S805_N2.3571.00
45_V75_V2.3331.00
866_L870_E2.3331.00
484_K488_K2.3251.00
585_K856_N2.3170.99
624_I653_V2.3120.99
807_L811_R2.2970.99
69_W99_D2.2820.99
687_I698_F2.2740.99
73_E103_K2.2710.99
724_S727_E2.2670.99
957_L1030_S2.2660.99
139_L268_E2.2550.99
416_S419_E2.2470.99
471_T485_L2.2470.99
799_V876_P2.2380.99
857_E870_E2.2290.99
270_A281_V2.2120.99
216_Y251_C2.2030.99
553_G589_E2.1960.99
206_K291_E2.1710.99
37_E322_K2.1570.99
503_S506_Y2.1550.99
662_S814_N2.1480.99
996_V1026_G2.1480.99
140_P291_E2.1450.99
937_G965_Y2.1290.99
443_A447_E2.1250.99
735_A739_S2.1230.99
392_Q491_F2.1220.99
162_Y183_E2.1050.99
482_T486_A2.1030.99
551_S589_E2.1020.99
801_R804_E2.1010.99
508_R621_L2.0860.99
148_R201_E2.0790.99
557_L623_L2.0690.99
505_E650_E2.0610.99
368_Q429_P2.0500.99
439_F448_V2.0480.99
417_K441_E2.0410.99
139_L265_Y2.0390.99
145_L159_I2.0380.99
769_G854_L2.0310.99
696_K725_E2.0300.99
373_E891_Q2.0220.99
74_K77_E2.0180.99
681_I805_N2.0180.99
649_E661_S2.0120.99
69_W103_K2.0020.98
98_V118_I2.0010.98
756_A794_L1.9920.98
388_E464_G1.9850.98
725_E729_Y1.9660.98
766_K868_F1.9650.98
285_L292_Y1.9630.98
445_I459_L1.9600.98
664_D712_Y1.9590.98
269_V294_I1.9560.98
162_Y182_T1.9550.98
240_V427_R1.9450.98
958_T971_P1.9450.98
435_A454_I1.9260.98
646_K650_E1.9230.98
611_Y627_E1.9210.98
797_N828_N1.9120.98
685_D701_E1.9080.98
664_D671_K1.9070.98
512_Y517_I1.9060.98
38_E322_K1.8930.98
157_A164_V1.8930.98
691_S694_E1.8900.98
73_E105_V1.8880.98
148_R152_E1.8860.98
510_I514_T1.8780.98
76_I111_V1.8770.98
169_S201_E1.8710.98
182_T185_D1.8680.98
64_M910_A1.8550.97
586_Y860_K1.8500.97
180_A189_N1.8490.97
77_E108_K1.8480.97
735_A744_V1.8480.97
974_D977_T1.8450.97
946_N998_D1.8410.97
762_S811_R1.8250.97
145_L156_N1.8190.97
758_I806_V1.8110.97
493_D511_R1.8080.97
981_M985_E1.8040.97
697_K701_E1.8030.97
45_V72_V1.8010.97
517_I625_K1.7980.97
585_K860_K1.7970.97
682_S829_T1.7970.97
101_H118_I1.7970.97
251_C259_Y1.7950.97
149_S200_G1.7900.97
970_L977_T1.7850.97
444_T447_E1.7780.97
449_Y459_L1.7690.97
470_E473_R1.7690.97
995_I1012_A1.7670.97
7_K61_K1.7590.97
730_E734_R1.7500.96
475_L479_D1.7370.96
675_L809_I1.7220.96
689_A698_F1.7210.96
439_F462_I1.7160.96
736_T744_V1.7060.96
122_E129_K1.7030.96
194_L200_G1.7000.96
756_A825_V1.6980.96
133_T272_S1.6880.96
386_S542_N1.6850.96
166_V202_V1.6740.95
756_A802_M1.6710.95
556_L656_L1.6700.95
380_V397_M1.6640.95
801_R805_N1.6540.95
166_V204_L1.6510.95
436_A440_K1.6460.95
795_S798_N1.6420.95
101_H107_Q1.6380.95
1010_R1014_D1.6290.95
735_A738_I1.6280.95
509_K513_E1.6210.94
181_W185_D1.6190.94
617_V647_E1.6180.94
403_P498_K1.6180.94
436_A462_I1.6130.94
131_R135_I1.6010.94
795_S828_N1.5950.94
718_S735_A1.5900.94
685_D748_K1.5840.94
760_G819_F1.5830.94
424_L438_A1.5790.94
532_A535_N1.5710.93
675_L812_E1.5670.93
222_K328_E1.5620.93
123_K272_S1.5620.93
387_F457_F1.5610.93
583_G590_V1.5590.93
586_Y863_F1.5560.93
69_W72_V1.5530.93
465_L491_F1.5470.93
273_I297_T1.5450.93
479_D482_T1.5420.93
464_G489_L1.5420.93
483_L510_I1.5390.93
682_S801_R1.5330.93
162_Y186_L1.5290.93
84_I111_V1.5290.93
975_I986_L1.5270.92
554_N588_D1.5250.92
504_T508_R1.5220.92
791_F799_V1.5160.92
223_K328_E1.5120.92
510_I513_E1.5080.92
166_V186_L1.5070.92
617_V651_N1.5050.92
673_S683_Q1.5040.92
825_V830_P1.5020.92
947_L969_E1.4990.92
216_Y266_T1.4960.92
915_T918_D1.4920.92
801_R830_P1.4860.91
496_I500_L1.4790.91
258_E290_Y1.4790.91
69_W96_V1.4780.91
71_A75_V1.4750.91
963_T973_Q1.4750.91
798_N830_P1.4740.91
630_R654_R1.4690.91
235_L246_T1.4690.91
756_A830_P1.4670.91
965_Y992_V1.4610.91
583_G863_F1.4580.91
105_V109_Y1.4550.90
761_V854_L1.4550.90
522_L537_M1.4550.90
391_L405_V1.4510.90
987_V1017_I1.4500.90
507_V510_I1.4500.90
147_A153_A1.4410.90
798_N825_V1.4390.90
786_T884_S1.4380.90
319_V335_K1.4350.90
633_A859_M1.4340.90
443_A448_V1.4330.90
512_Y622_D1.4280.90
671_K712_Y1.4260.90
449_Y453_G1.4200.89
798_N828_N1.4170.89
417_K447_E1.4130.89
147_A152_E1.4110.89
421_L443_A1.4100.89
4_T112_K1.4080.89
556_L863_F1.4080.89
805_N830_P1.4070.89
468_F486_A1.4000.89
865_G870_E1.3950.89
800_N803_R1.3940.88
99_D102_K1.3910.88
142_P293_Y1.3900.88
662_S665_I1.3900.88
472_L486_A1.3880.88
665_I812_E1.3770.88
439_F463_K1.3730.88
859_M863_F1.3720.88
86_I97_G1.3690.88
942_Y950_L1.3690.88
132_E136_E1.3670.87
421_L451_V1.3580.87
235_L435_A1.3570.87
521_K545_E1.3450.87
395_I432_F1.3440.87
551_S555_K1.3400.86
150_E186_L1.3390.86
67_V72_V1.3380.86
440_K469_Y1.3380.86
494_E504_T1.3360.86
801_R829_T1.3330.86
632_V653_V1.3320.86
480_K514_T1.3220.86
676_L832_I1.3180.85
962_L1033_F1.3180.85
339_R533_V1.3170.85
699_A704_F1.3160.85
681_I830_P1.3140.85
762_S767_V1.3130.85
255_D258_E1.3110.85
478_I483_L1.3020.85
806_V823_F1.2980.85
68_V71_A1.2930.84
465_L489_L1.2920.84
517_I622_D1.2890.84
956_N1030_S1.2840.84
403_P494_E1.2710.83
555_K589_E1.2700.83
674_K678_K1.2690.83
556_L583_G1.2690.83
9_L84_I1.2650.83
261_N285_L1.2630.83
468_F482_T1.2610.83
502_K506_Y1.2600.83
38_E327_Y1.2580.83
979_D982_K1.2560.83
155_K158_K1.2560.83
461_K464_G1.2540.82
590_V863_F1.2520.82
157_A186_L1.2500.82
621_L653_V1.2500.82
472_L499_A1.2480.82
673_S686_W1.2480.82
502_K507_V1.2460.82
633_A862_I1.2410.82
809_I821_V1.2360.82
420_A448_V1.2360.82
235_L248_V1.2350.82
443_A451_V1.2350.82
123_K136_E1.2300.81
392_Q465_L1.2270.81
150_E154_I1.2180.81
548_I626_K1.2150.80
219_M319_V1.2130.80
475_L482_T1.2080.80
124_A281_V1.2050.80
732_V736_T1.2040.80
799_V803_R1.2030.80
98_V129_K1.2020.80
767_V811_R1.1970.79
472_L496_I1.1960.79
547_D550_F1.1940.79
955_D959_R1.1930.79
457_F461_K1.1890.79
402_E433_L1.1870.79
968_S974_D1.1840.79
954_A964_V1.1810.78
546_D550_F1.1800.78
609_K627_E1.1770.78
1031_K1034_L1.1770.78
736_T739_S1.1760.78
1006_Y1010_R1.1740.78
123_K133_T1.1720.78
586_Y865_G1.1720.78
144_S205_E1.1670.78
129_K132_E1.1630.77
265_Y292_Y1.1580.77
436_A466_V1.1500.77
168_V177_S1.1490.77
771_T799_V1.1470.76
84_I106_L1.1470.76
417_K421_L1.1460.76
45_V100_L1.1460.76
803_R874_E1.1460.76
449_Y456_E1.1450.76
581_E606_I1.1430.76
192_R196_Q1.1410.76
32_L58_F1.1400.76
621_L651_N1.1390.76
980_K985_E1.1380.76
976_E982_K1.1350.76
861_A870_E1.1340.76
518_P541_Y1.1290.75
771_T803_R1.1270.75
122_E170_F1.1260.75
999_G1005_D1.1240.75
391_L462_I1.1240.75
977_T1004_F1.1230.75
248_V353_T1.1220.75
338_G533_V1.1200.75
478_I500_L1.1190.75
388_E489_L1.1180.75
98_V122_E1.1170.74
619_R622_D1.1160.74
256_N260_Q1.1140.74
206_K293_Y1.1120.74
788_S916_F1.1110.74
805_N823_F1.1110.74
508_R651_N1.1090.74
550_F609_K1.1080.74
327_Y332_V1.1080.74
153_A204_L1.1060.74
423_Y434_Y1.1050.74
186_L204_L1.1020.73
11_I67_V1.0970.73
69_W105_V1.0950.73
423_Y428_R1.0950.73
319_V332_V1.0930.73
386_S390_S1.0920.73
69_W73_E1.0920.73
975_I978_I1.0890.73
448_V462_I1.0870.72
135_I141_V1.0850.72
471_T482_T1.0840.72
97_G113_V1.0830.72
392_Q404_G1.0790.72
182_T980_K1.0760.72
845_F910_A1.0760.72
131_R205_E1.0750.72
424_L452_T1.0740.71
386_S489_L1.0730.71
260_Q263_R1.0720.71
212_I455_N1.0690.71
777_E1024_R1.0660.71
615_I644_I1.0640.71
216_Y226_S1.0630.71
722_A744_V1.0590.70
219_M270_A1.0590.70
225_N343_C1.0590.70
860_K870_E1.0590.70
938_I996_V1.0580.70
99_D103_K1.0560.70
380_V394_A1.0560.70
732_V735_A1.0550.70
124_A718_S1.0530.70
580_M607_A1.0500.70
17_K175_R1.0500.70
226_S267_I1.0490.70
119_D129_K1.0460.69
264_T268_E1.0450.69
140_P206_K1.0440.69
218_V228_V1.0420.69
437_K440_K1.0410.69
139_L294_I1.0410.69
622_D625_K1.0400.69
681_I801_R1.0390.69
11_I93_A1.0370.69
223_K330_H1.0350.69
483_L516_T1.0350.69
994_I1020_I1.0350.69
996_V1023_G1.0350.69
977_T981_M1.0340.69
881_A912_F1.0320.68
718_S736_T1.0310.68
226_S271_R1.0300.68
750_I826_K1.0280.68
190_I204_L1.0280.68
153_A166_V1.0270.68
448_V459_L1.0260.68
11_I72_V1.0240.68
334_N337_S1.0220.68
438_A443_A1.0210.68
205_E208_L1.0210.68
987_V1011_T1.0200.67
257_L290_Y1.0180.67
225_N328_E1.0170.67
806_V821_V1.0120.67
445_I463_K1.0110.67
417_K443_A1.0090.67
811_R814_N1.0080.67
187_K191_R1.0050.66
226_S270_A1.0020.66
809_I832_I1.0010.66
83_G86_I0.9980.66
729_Y733_R0.9970.66
559_I620_V0.9940.65
248_V387_F0.9930.65
521_K542_N0.9910.65
917_Y1031_K0.9900.65
36_K58_F0.9890.65
189_N193_A0.9890.65
934_N1033_F0.9870.65
967_I1008_I0.9870.65
420_A441_E0.9860.65
105_V108_K0.9800.64
816_K861_A0.9790.64
580_M590_V0.9790.64
791_F794_L0.9770.64
445_I460_N0.9760.64
162_Y187_K0.9730.64
933_P936_N0.9730.64
288_R453_G0.9730.64
385_R542_N0.9720.64
260_Q530_W0.9690.63
995_I1008_I0.9660.63
276_I323_L0.9650.63
786_T885_A0.9640.63
789_I846_S0.9640.63
676_L680_G0.9620.63
232_I247_V0.9610.63
260_Q529_E0.9600.63
712_Y742_Y0.9600.63
480_K516_T0.9600.63
879_Y912_F0.9590.63
965_Y973_Q0.9590.63
119_D123_K0.9560.62
157_A190_I0.9550.62
460_N463_K0.9550.62
497_S503_S0.9540.62
987_V1008_I0.9540.62
468_F485_L0.9530.62
216_Y259_Y0.9530.62
849_A881_A0.9520.62
33_K605_D0.9520.62
355_I358_W0.9510.62
518_P622_D0.9510.62
139_L281_V0.9490.62
385_R521_K0.9480.62
690_T694_E0.9480.62
34_A332_V0.9470.62
497_S507_V0.9460.62
335_K604_W0.9450.61
22_A564_F0.9420.61
142_P208_L0.9410.61
424_L434_Y0.9410.61
154_I183_E0.9390.61
695_I732_V0.9380.61
269_V629_F0.9370.61
449_Y454_I0.9360.61
462_I466_V0.9350.61
6_K41_E0.9350.61
506_Y509_K0.9310.60
251_C348_L0.9290.60
732_V739_S0.9270.60
166_V190_I0.9270.60
1004_F1008_I0.9260.60
983_A1008_I0.9250.60
636_S858_S0.9240.60
1020_I1029_V0.9230.60
738_I744_V0.9230.60
646_K649_E0.9220.60
773_E793_K0.9210.59
211_W293_Y0.9160.59
516_T541_Y0.9160.59
406_V498_K0.9130.59
447_E450_E0.9120.59
938_I954_A0.9100.59
256_N530_W0.9090.58
152_E155_K0.9070.58
266_T283_F0.9070.58
579_L633_A0.9060.58
589_E609_K0.9050.58
1000_Y1003_K0.9040.58
546_D549_E0.9040.58
377_V564_F0.9040.58
692_L729_Y0.9030.58
355_I394_A0.9030.58
464_G468_F0.9020.58
340_T344_F0.9010.58
736_T742_Y0.8990.58
803_R873_Y0.8980.58
976_E981_M0.8960.57
164_V186_L0.8960.57
246_T432_F0.8950.57
43_V75_V0.8940.57
965_Y986_L0.8940.57
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267_I1016_N0.5110.26
391_L472_L0.5100.26
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833_I1025_L0.5080.26
376_S769_G0.5080.26
246_T435_A0.5080.26
116_T231_C0.5080.26
139_L247_V0.5070.26
744_V884_S0.5070.26
225_N528_G0.5070.26
983_A1007_N0.5070.26
735_A909_A0.5060.26
10_V204_L0.5060.26
102_K257_L0.5060.26
33_K211_W0.5060.26
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343_C1019_I0.5050.25
41_E252_Q0.5050.25
292_Y359_D0.5050.25
212_I525_T0.5050.25
101_H119_D0.5040.25
621_L632_V0.5040.25
113_V131_R0.5040.25
155_K552_Q0.5040.25
65_L79_E0.5040.25
624_I632_V0.5040.25
140_P368_Q0.5040.25
923_S926_S0.5040.25
261_N290_Y0.5030.25
177_S373_E0.5030.25
81_P833_I0.5020.25
13_S999_G0.5020.25
139_L279_C0.5020.25
473_R591_A0.5020.25
718_S929_P0.5020.25
55_S360_L0.5010.25
88_F523_I0.5010.25
481_E814_N0.5010.25
319_V338_G0.5010.25
260_Q334_N0.5010.25
1002_K1005_D0.5010.25
633_A761_V0.5010.25
151_E187_K0.5010.25
238_M1025_L0.5000.25
825_V833_I0.5000.25
256_N524_D0.5000.25
678_K765_N0.5000.25
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1a9xA 3 0.981 100 0.416 Contact Map
3jrxA 1 0.3873 100 0.893 Contact Map
3glkA 1 0.3739 100 0.894 Contact Map
3orqA 2 0.3416 100 0.898 Contact Map
2vpqA 2 0.3939 100 0.9 Contact Map
1ulzA 2 0.3996 100 0.901 Contact Map
2dzdA 2 0.393 100 0.904 Contact Map
3q2oA 2 0.3435 100 0.904 Contact Map
1w96A 1 0.393 100 0.904 Contact Map
2dwcA 4 0.353 100 0.908 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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