GREMLIN Database
RS11 - 30S ribosomal protein S11
UniProt: P95988 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 132 (116)
Sequences: 1511 (586)
Seq/√Len: 54.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
24_T32_E3.8151.00
11_I77_K3.7051.00
10_G71_I3.6791.00
27_D31_A3.4091.00
74_L105_F3.3981.00
36_R61_K2.8911.00
12_A25_I2.7831.00
62_A66_A2.7581.00
75_H109_R2.5831.00
75_H108_G2.5191.00
63_A103_A2.4061.00
12_A74_L2.3951.00
61_K65_D2.2061.00
73_A106_I2.1421.00
5_R69_K2.1381.00
9_W73_A2.0031.00
33_I71_I1.9961.00
36_R40_G1.9801.00
76_I100_L1.8720.99
67_L72_M1.7200.99
25_I62_A1.6850.99
100_L105_F1.6820.99
7_I33_I1.6190.98
33_I69_K1.6150.98
14_I96_A1.5930.98
23_L62_A1.5730.98
21_T50_S1.5200.98
18_Q89_P1.4550.97
59_A63_A1.4170.96
25_I66_A1.3770.96
64_S67_L1.3730.96
7_I69_K1.3300.95
77_K113_V1.3090.94
12_A100_L1.2740.93
34_I62_A1.2610.93
46_D50_S1.2260.92
6_E69_K1.1900.91
73_A108_G1.1780.90
64_S68_E1.1660.90
13_H26_S1.1460.89
13_H113_V1.1440.89
4_R69_K1.1300.88
36_R41_M1.1010.87
40_G65_D1.0500.84
9_W28_L1.0450.84
41_M57_L1.0160.82
101_A107_I1.0090.82
19_N49_K1.0020.81
40_G61_K0.9940.81
77_K109_R0.9890.81
78_V97_I0.9850.80
117_P120_T0.9740.80
15_Y22_L0.9630.79
8_R32_E0.9380.77
21_T47_R0.9330.77
93_A112_D0.9200.76
15_Y91_P0.9180.75
97_I106_I0.9160.75
41_M53_Y0.9020.74
52_P91_P0.8940.73
8_R28_L0.8940.73
92_G114_T0.8850.73
25_I100_L0.8810.72
14_I97_I0.8780.72
38_S41_M0.8710.71
8_R71_I0.8540.70
53_Y57_L0.8540.70
4_R95_P0.8350.68
11_I28_L0.8340.68
43_V56_M0.7990.65
17_S91_P0.7900.64
63_A74_L0.7870.64
94_Q98_R0.7840.63
53_Y60_N0.7830.63
43_V127_R0.7820.63
42_V61_K0.7690.62
77_K111_E0.7660.62
20_N120_T0.7660.62
4_R8_R0.7650.61
47_R118_H0.7490.60
25_I105_F0.7490.60
14_I57_L0.7450.59
27_D102_R0.7430.59
9_W29_T0.7420.59
15_Y127_R0.7410.59
37_A42_V0.7370.59
66_A69_K0.7320.58
22_L121_I0.7290.58
42_V80_A0.7260.57
89_P99_A0.7250.57
14_I113_V0.7210.57
18_Q60_N0.7180.57
41_M61_K0.7170.56
78_V96_A0.7150.56
12_A17_S0.7120.56
18_Q50_S0.7120.56
64_S77_K0.7110.56
41_M58_A0.7070.55
13_H77_K0.7050.55
41_M127_R0.7050.55
5_R68_E0.7020.55
63_A105_F0.6930.54
19_N127_R0.6920.54
16_A97_I0.6890.53
44_K65_D0.6830.53
118_H121_I0.6830.53
37_A80_A0.6830.53
16_A57_L0.6800.53
43_V49_K0.6700.51
21_T55_A0.6670.51
50_S58_A0.6660.51
44_K60_N0.6620.51
49_K109_R0.6580.50
6_E71_I0.6560.50
16_A92_G0.6540.50
34_I68_E0.6520.50
57_L60_N0.6500.49
43_V114_T0.6470.49
26_S30_G0.6440.49
16_A98_R0.6430.49
35_S104_G0.6300.47
28_L47_R0.6150.46
35_S118_H0.6100.45
24_T108_G0.6020.44
120_T123_R0.5970.44
24_T30_G0.5970.44
49_K78_V0.5960.44
16_A52_P0.5910.43
71_I96_A0.5830.42
36_R62_A0.5770.42
8_R29_T0.5730.41
63_A67_L0.5710.41
28_L106_I0.5700.41
15_Y111_E0.5690.41
63_A100_L0.5680.41
94_Q110_I0.5650.40
50_S91_P0.5640.40
59_A103_A0.5610.40
120_T125_G0.5590.40
65_D69_K0.5590.40
23_L34_I0.5540.39
9_W106_I0.5540.39
60_N64_S0.5540.39
28_L32_E0.5500.39
11_I107_I0.5500.39
8_R77_K0.5480.39
56_M93_A0.5480.39
43_V54_A0.5460.38
14_I19_N0.5460.38
69_K95_P0.5360.37
15_Y124_P0.5350.37
17_S75_H0.5340.37
122_R127_R0.5320.37
12_A97_I0.5320.37
62_A69_K0.5320.37
79_R113_V0.5320.37
45_A49_K0.5310.37
28_L75_H0.5310.37
22_L59_A0.5290.37
89_P95_P0.5230.36
40_G79_R0.5190.36
108_G115_P0.5180.36
4_R79_R0.5170.36
89_P111_E0.5170.36
73_A95_P0.5140.35
92_G98_R0.5130.35
33_I49_K0.5100.35
19_N128_R0.5080.35
38_S58_A0.5080.35
35_S38_S0.5080.35
107_I111_E0.5030.34
74_L107_I0.5020.34
91_P101_A0.5010.34
69_K91_P0.5000.34
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3zeyH 1 0.8864 100 0.087 Contact Map
4ujpP 1 0.9545 100 0.087 Contact Map
3j7aP 1 0.9621 100 0.088 Contact Map
4cvnE 1 0.947 100 0.113 Contact Map
4tp8K 1 0.0152 100 0.184 Contact Map
3bbnK 1 0.8864 100 0.187 Contact Map
4rb5K 1 0.8636 100 0.188 Contact Map
5aj3K 1 0.9091 100 0.193 Contact Map
1ovyA 1 0.7197 93.8 0.892 Contact Map
3j7yP 1 0.803 92.6 0.897 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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