GREMLIN Database
HELX - Uncharacterized ATP-dependent helicase SSO0112
UniProt: P95949 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 875 (795)
Sequences: 1475 (875)
Seq/√Len: 31.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
376_H379_S6.0311.00
454_E458_S5.7481.00
416_N456_D5.4941.00
440_F454_E5.0191.00
374_G377_I4.7261.00
375_H378_R4.6651.00
590_R641_D4.4891.00
170_I191_L4.4371.00
106_L121_V4.3211.00
375_H379_S4.2401.00
805_I814_I4.0471.00
46_Y230_R4.0331.00
440_F457_Y3.8881.00
437_D454_E3.8861.00
196_N445_R3.8771.00
195_R205_R3.8391.00
374_G378_R3.8251.00
435_D438_D3.7131.00
278_L351_I3.6931.00
440_F444_R3.5641.00
724_Y803_K3.4671.00
453_S456_D3.4151.00
185_A449_F3.3941.00
447_Y450_S3.3631.00
808_K813_E3.3181.00
374_G379_S3.3051.00
134_Q138_K3.2471.00
425_I439_L3.2471.00
271_V335_V3.2351.00
720_P810_A3.1311.00
643_L815_K3.1221.00
511_I555_V3.1101.00
244_V247_P3.1001.00
21_A25_R3.0781.00
546_E558_K3.0611.00
164_L167_V3.0551.00
427_S498_F2.9741.00
267_I355_I2.9041.00
172_V222_L2.8621.00
162_Q165_T2.8441.00
274_H382_K2.8371.00
267_I357_L2.8331.00
644_I660_F2.8251.00
240_V247_P2.7921.00
548_I558_K2.7511.00
223_V229_Y2.7441.00
278_L338_S2.7241.00
66_I171_I2.6291.00
129_T132_E2.6101.00
640_S643_L2.5961.00
45_N204_V2.5701.00
454_E457_Y2.5401.00
217_E220_Q2.5241.00
415_K450_S2.5190.99
268_L297_L2.5010.99
175_I218_V2.4850.99
122_G132_E2.4410.99
216_E231_I2.4170.99
456_D786_K2.4060.99
120_R142_H2.4040.99
244_V250_D2.3960.99
464_L480_I2.3920.99
247_P253_H2.3910.99
326_E330_K2.3880.99
196_N438_D2.3770.99
110_R118_D2.3690.99
318_R322_L2.3140.99
485_E489_Y2.2790.99
189_A443_L2.2780.99
421_L443_L2.2770.99
583_L808_K2.2740.99
358_S388_V2.2730.99
359_S395_E2.2310.99
660_F697_F2.2270.99
84_Y142_H2.2260.99
327_K332_I2.2250.99
242_I247_P2.2210.99
486_K489_Y2.2090.99
51_S215_L2.1830.99
415_K451_D2.1800.99
82_K166_D2.1760.98
290_V357_L2.1740.98
244_V253_H2.1530.98
422_S460_V2.1380.98
198_I203_F2.1290.98
790_R794_E2.1110.98
241_D247_P2.1100.98
122_G141_P2.0970.98
99_Q103_L2.0780.98
131_Y135_K2.0730.98
593_A631_Y2.0390.98
170_I194_F2.0130.97
195_R203_F2.0020.97
270_E353_L1.9930.97
587_K591_E1.9850.97
385_V396_C1.9800.97
66_I85_A1.9750.97
247_P251_L1.9630.97
86_I167_V1.9540.97
196_N442_I1.9430.97
648_I821_P1.9310.97
195_R202_E1.9200.97
266_T269_N1.9000.96
664_Y805_I1.8920.96
238_K247_P1.8870.96
240_V244_V1.8760.96
416_N453_S1.8650.96
33_P37_A1.8630.96
50_V61_A1.8580.96
218_V221_F1.8560.96
279_I646_I1.8550.96
270_E384_R1.8540.96
69_S168_K1.8510.96
246_S249_K1.8400.96
429_S488_I1.8290.95
186_Y190_M1.8190.95
207_G222_L1.8030.95
247_P250_D1.7940.95
246_S250_D1.7930.95
459_L786_K1.7860.95
428_A434_I1.7840.95
41_L48_V1.7760.95
804_E807_K1.7760.95
434_I439_L1.7760.95
579_Y664_Y1.7680.95
84_Y168_K1.7660.95
31_F39_I1.7630.94
216_E219_A1.7560.94
245_I266_T1.7480.94
265_K297_L1.7350.94
221_F448_N1.7250.94
27_K108_E1.7240.94
47_N229_Y1.7240.94
465_S480_I1.7190.94
417_P449_F1.7130.94
537_I544_T1.7100.94
27_K104_E1.6980.93
323_D327_K1.6970.93
249_K253_H1.6860.93
676_F697_F1.6580.92
579_Y804_E1.6460.92
618_H621_M1.6420.92
583_L804_E1.6360.92
38_A50_V1.6360.92
524_L529_V1.6310.92
370_I383_G1.6290.92
401_K584_E1.6230.92
88_I638_V1.6170.91
438_D441_K1.6170.91
511_I550_S1.6080.91
185_A417_P1.5930.91
401_K405_D1.5890.91
547_F550_S1.5850.91
428_A432_S1.5830.91
88_I151_F1.5780.90
435_D487_I1.5780.90
590_R642_N1.5730.90
60_L101_N1.5600.90
440_F458_S1.5570.90
425_I460_V1.5540.90
268_L669_L1.5420.89
822_T826_S1.5370.89
218_V224_G1.5340.89
47_N223_V1.5260.89
808_K814_I1.5230.89
170_I203_F1.5180.89
744_C788_T1.5150.88
422_S464_L1.5130.88
245_I250_D1.5010.88
279_I335_V1.4890.88
483_K489_Y1.4870.88
218_V222_L1.4780.87
103_L107_N1.4730.87
212_V336_V1.4710.87
590_R640_S1.4640.87
483_K488_I1.4600.87
81_D142_H1.4600.87
587_K641_D1.4590.86
394_V623_I1.4550.86
192_E446_S1.4480.86
428_A439_L1.4400.86
418_L452_L1.4380.86
436_R458_S1.4270.85
245_I249_K1.4240.85
256_E259_V1.4240.85
182_K419_D1.4130.85
391_D626_Y1.4120.85
37_A40_P1.4100.85
274_H277_T1.4100.85
646_I660_F1.4070.84
529_V555_V1.4070.84
579_Y801_R1.4030.84
269_N273_K1.3920.84
198_I201_K1.3890.84
240_V249_K1.3870.84
265_K269_N1.3860.83
630_Q827_P1.3660.83
126_S314_S1.3660.83
152_G190_M1.3650.83
338_S501_N1.3420.81
261_K293_K1.3410.81
769_S788_T1.3400.81
254_S257_S1.3350.81
241_D382_K1.3350.81
154_S163_K1.3260.81
206_I351_I1.3220.80
624_Y628_L1.3210.80
586_G664_Y1.3170.80
63_F101_N1.3160.80
238_K244_V1.3090.80
128_T133_K1.3070.80
617_K621_M1.3060.80
144_L373_A1.3060.80
310_E327_K1.3010.79
63_F102_L1.2880.79
436_R482_I1.2830.78
439_L676_F1.2800.78
586_G641_D1.2690.78
731_V806_L1.2690.78
167_V170_I1.2690.78
258_E261_K1.2670.77
215_L218_V1.2650.77
220_Q447_Y1.2650.77
73_L84_Y1.2630.77
55_G58_K1.2530.77
436_R457_Y1.2520.77
452_L457_Y1.2470.76
244_V249_K1.2460.76
845_D848_E1.2460.76
847_R852_K1.2420.76
532_L547_F1.2390.76
159_K162_Q1.2380.76
31_F36_R1.2350.76
63_F89_S1.2340.76
854_H857_V1.2320.75
179_A212_V1.2310.75
152_G424_I1.2310.75
471_V542_G1.2280.75
178_L181_S1.2170.75
136_M141_P1.2160.74
644_I664_Y1.2100.74
192_E445_R1.2050.74
187_L753_R1.2020.74
287_T408_I1.2000.73
590_R643_L1.2000.73
543_R559_E1.1980.73
398_V402_L1.1960.73
440_F452_L1.1960.73
215_L408_I1.1950.73
129_T135_K1.1950.73
44_Q230_R1.1950.73
136_M154_S1.1890.73
107_N110_R1.1880.73
67_L143_I1.1870.73
512_S520_Y1.1870.73
675_A723_V1.1820.72
418_L460_V1.1790.72
403_A406_R1.1770.72
102_L105_P1.1740.72
579_Y583_L1.1730.72
353_L384_R1.1660.71
719_T810_A1.1640.71
181_S188_S1.1620.71
316_L324_V1.1600.71
276_T350_Y1.1560.71
89_S101_N1.1560.71
525_E545_Y1.1500.70
748_S784_V1.1490.70
221_F224_G1.1480.70
662_A669_L1.1460.70
682_E779_I1.1460.70
851_K854_H1.1460.70
274_H353_L1.1450.70
268_L272_K1.1430.70
384_R460_V1.1400.70
51_S212_V1.1350.69
623_I626_Y1.1250.69
512_S523_N1.1210.68
40_P44_Q1.1200.68
616_D620_S1.1200.68
727_V730_A1.1170.68
270_E273_K1.1170.68
364_S640_S1.1150.68
429_S434_I1.1100.67
63_F105_P1.1070.67
483_K487_I1.1060.67
243_K384_R1.1050.67
226_D445_R1.1040.67
394_V589_R1.1040.67
83_V136_M1.1030.67
249_K252_V1.1010.67
804_E808_K1.1010.67
238_K381_S1.0960.66
424_I427_S1.0950.66
319_D638_V1.0940.66
168_K810_A1.0910.66
441_K444_R1.0870.66
485_E488_I1.0830.66
676_F715_F1.0830.66
170_I205_R1.0810.65
244_V248_V1.0800.65
175_I222_L1.0750.65
271_V279_I1.0730.65
460_V698_A1.0710.65
418_L456_D1.0700.65
67_L538_F1.0690.64
137_L163_K1.0620.64
278_L507_D1.0570.64
238_K374_G1.0560.64
217_E447_Y1.0560.64
101_N105_P1.0550.63
272_K298_A1.0540.63
336_V342_L1.0530.63
155_I406_R1.0510.63
250_D253_H1.0460.63
741_F750_M1.0460.63
73_L138_K1.0410.62
437_D721_D1.0390.62
192_E196_N1.0380.62
359_S433_P1.0330.62
48_V175_I1.0310.62
242_I318_R1.0280.61
424_I429_S1.0220.61
532_L536_D1.0210.61
86_I170_I1.0160.60
593_A640_S1.0140.60
310_E320_V1.0100.60
405_D587_K1.0080.60
193_L424_I1.0070.60
224_G227_R1.0040.60
138_K453_S1.0030.59
23_W27_K1.0020.59
593_A638_V1.0020.59
217_E412_H1.0010.59
82_K178_L0.9980.59
666_R694_D0.9980.59
150_S153_I0.9970.59
266_T270_E0.9960.59
231_I234_A0.9950.59
455_S459_L0.9900.58
205_R222_L0.9900.58
847_R850_L0.9880.58
794_E800_L0.9860.58
850_L853_L0.9860.58
88_I637_K0.9850.58
312_H325_E0.9810.58
785_M789_I0.9810.58
465_S482_I0.9780.58
25_R445_R0.9780.58
803_K807_K0.9770.57
527_E569_S0.9770.57
30_T514_V0.9770.57
57_G90_P0.9770.57
58_K90_P0.9770.57
217_E410_S0.9760.57
66_I169_W0.9740.57
536_D644_I0.9730.57
538_F731_V0.9700.57
127_D665_G0.9660.57
88_I660_F0.9630.56
55_G59_T0.9620.56
240_V253_H0.9620.56
46_Y228_E0.9610.56
91_L97_D0.9580.56
718_I777_R0.9570.56
245_I253_H0.9570.56
53_P91_L0.9570.56
261_K264_Y0.9550.56
433_P489_Y0.9550.56
409_D565_P0.9520.55
130_P802_A0.9510.55
701_V723_V0.9500.55
128_T141_P0.9500.55
246_S253_H0.9460.55
189_A449_F0.9440.55
193_L428_A0.9440.55
24_F29_T0.9430.55
220_Q223_V0.9430.55
45_N168_K0.9410.55
133_K448_N0.9400.54
67_L319_D0.9400.54
133_K798_D0.9360.54
99_Q145_I0.9350.54
47_N518_N0.9340.54
68_D72_E0.9320.54
22_K26_Q0.9270.53
483_K486_K0.9270.53
497_I752_L0.9240.53
462_R466_G0.9180.53
86_I218_V0.9170.53
259_V285_H0.9160.53
49_L208_L0.9140.52
285_H538_F0.9140.52
70_L119_V0.9130.52
294_L337_V0.9130.52
165_T445_R0.9100.52
420_V504_T0.9050.52
408_I519_R0.9050.52
67_L385_V0.9020.51
240_V246_S0.9010.51
662_A805_I0.9010.51
843_A850_L0.8990.51
46_Y804_E0.8990.51
125_T385_V0.8970.51
86_I813_E0.8950.51
293_K296_K0.8950.51
189_A446_S0.8950.51
630_Q828_F0.8940.51
257_S334_K0.8940.51
312_H341_S0.8920.51
56_S93_A0.8900.50
270_E274_H0.8900.50
546_E563_Q0.8880.50
451_D800_L0.8870.50
55_G90_P0.8860.50
89_S105_P0.8860.50
150_S155_I0.8860.50
318_R824_I0.8850.50
463_Y666_R0.8840.50
167_V203_F0.8840.50
249_K618_H0.8840.50
423_Q503_G0.8810.50
496_L500_T0.8810.50
408_I744_C0.8800.50
234_A237_V0.8800.50
143_I382_K0.8780.49
668_A801_R0.8760.49
85_A416_N0.8740.49
50_V215_L0.8740.49
83_V163_K0.8740.49
815_K820_G0.8720.49
124_R127_D0.8710.49
471_V474_K0.8700.49
244_V400_A0.8700.49
592_I627_I0.8650.48
246_S252_V0.8650.48
98_M746_E0.8640.48
33_P809_I0.8620.48
139_K810_A0.8620.48
677_A699_L0.8610.48
29_T61_A0.8600.48
160_F164_L0.8600.48
382_K386_I0.8590.48
728_T789_I0.8580.48
150_S341_S0.8580.48
627_I638_V0.8580.48
649_Y659_I0.8570.48
165_T243_K0.8570.48
192_E224_G0.8570.48
845_D850_L0.8560.48
408_I478_A0.8540.48
339_S572_S0.8540.48
243_K247_P0.8530.47
505_I522_G0.8520.47
232_V247_P0.8520.47
316_L521_V0.8500.47
484_E487_I0.8490.47
217_E221_F0.8490.47
324_V558_K0.8470.47
324_V336_V0.8460.47
643_L813_E0.8450.47
242_I370_I0.8430.47
72_E232_V0.8420.47
226_D319_D0.8420.47
816_V823_N0.8410.47
118_D216_E0.8400.46
710_N713_S0.8400.46
120_R139_K0.8390.46
88_I190_M0.8390.46
86_I638_V0.8380.46
220_Q404_R0.8380.46
514_V554_K0.8380.46
693_T788_T0.8370.46
272_K724_Y0.8370.46
92_R318_R0.8370.46
207_G363_V0.8350.46
154_S309_I0.8350.46
808_K811_S0.8340.46
73_L165_T0.8330.46
495_R499_Y0.8310.46
241_D384_R0.8310.46
63_F143_I0.8310.46
352_D440_F0.8300.46
340_T764_R0.8300.46
46_Y72_E0.8290.46
198_I202_E0.8270.45
365_R532_L0.8270.45
41_L230_R0.8250.45
232_V235_R0.8250.45
64_L105_P0.8240.45
193_L197_L0.8240.45
416_N449_F0.8240.45
243_K335_V0.8240.45
524_L541_S0.8240.45
122_G136_M0.8230.45
754_R759_E0.8230.45
255_S258_E0.8230.45
383_G387_V0.8220.45
188_S446_S0.8210.45
630_Q741_F0.8210.45
24_F27_K0.8210.45
848_E851_K0.8210.45
220_Q590_R0.8190.45
168_K567_V0.8190.45
102_L106_L0.8170.45
480_I488_I0.8170.45
191_L222_L0.8170.45
187_L428_A0.8160.45
267_I271_V0.8160.45
846_R849_L0.8150.44
848_E853_L0.8150.44
463_Y687_D0.8140.44
492_K496_L0.8140.44
166_D631_Y0.8120.44
192_E205_R0.8090.44
22_K25_R0.8090.44
417_P458_S0.8070.44
370_I736_M0.8050.44
330_K814_I0.8050.44
547_F555_V0.8040.44
287_T311_A0.8040.44
671_A797_M0.8040.44
806_L810_A0.8040.44
180_N364_S0.8030.43
54_T210_A0.8030.43
138_K168_K0.8030.43
46_Y231_I0.8020.43
410_S580_E0.8010.43
846_R851_K0.7990.43
664_Y808_K0.7970.43
681_S730_A0.7960.43
54_T57_G0.7950.43
54_T58_K0.7950.43
582_A585_I0.7950.43
849_L852_K0.7940.43
107_N593_A0.7920.43
210_A371_G0.7920.43
255_S259_V0.7920.43
503_G694_D0.7910.43
148_P313_H0.7900.42
438_D719_T0.7900.42
267_I346_I0.7890.42
398_V588_F0.7890.42
64_L106_L0.7880.42
678_Y798_D0.7870.42
287_T770_E0.7850.42
126_S133_K0.7840.42
379_S441_K0.7840.42
342_L353_L0.7840.42
40_P43_K0.7830.42
501_N754_R0.7800.42
437_D458_S0.7800.42
586_G668_A0.7800.42
433_P490_P0.7800.42
524_L734_T0.7800.42
402_L584_E0.7790.42
453_S492_K0.7790.42
435_D587_K0.7780.41
255_S260_D0.7780.41
440_F461_L0.7770.41
140_P337_V0.7770.41
171_I462_R0.7760.41
22_K27_K0.7750.41
731_V797_M0.7730.41
269_N459_L0.7730.41
224_G277_T0.7720.41
171_I628_L0.7710.41
269_N272_K0.7710.41
102_L119_V0.7700.41
26_Q80_E0.7680.41
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334_K422_S0.5100.23
274_H785_M0.5100.23
162_Q591_E0.5090.23
60_L503_G0.5090.23
731_V810_A0.5090.23
264_Y290_V0.5090.23
31_F281_T0.5090.23
89_S106_L0.5090.23
389_D392_D0.5080.23
183_R288_E0.5080.23
312_H557_V0.5080.23
219_A229_Y0.5080.23
63_F100_R0.5080.23
587_K811_S0.5080.23
50_V474_K0.5070.23
721_D781_N0.5070.23
54_T59_T0.5070.23
52_S339_S0.5070.23
444_R560_A0.5070.23
442_I806_L0.5060.23
171_I178_L0.5060.23
33_P704_D0.5050.23
287_T291_A0.5050.23
365_R792_I0.5050.23
840_V843_A0.5040.23
51_S231_I0.5040.23
165_T330_K0.5040.23
838_S852_K0.5040.23
528_F538_F0.5040.23
89_S186_Y0.5030.23
44_Q815_K0.5030.23
241_D267_I0.5020.23
694_D742_R0.5020.23
259_V281_T0.5020.23
469_F650_D0.5020.23
183_R522_G0.5010.22
441_K454_E0.5010.22
122_G389_D0.5010.22
172_V175_I0.5010.22
284_R347_D0.5010.22
39_I68_D0.5010.22
101_N503_G0.5010.22
826_S833_I0.5000.22
318_R457_Y0.5000.22
537_I798_D0.5000.22
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2va8A 1 0.7177 100 0.738 Contact Map
2p6rA 1 0.7017 100 0.739 Contact Map
2zj8A 2 0.712 100 0.741 Contact Map
4f92B 1 0.8217 100 0.749 Contact Map
4pxaA 1 0.4469 100 0.753 Contact Map
4d25A 1 0.4389 100 0.753 Contact Map
4w7sA 2 0.4697 100 0.754 Contact Map
4nhoA 1 0.4389 100 0.754 Contact Map
5agaA 4 0.7817 100 0.755 Contact Map
2db3A 1 0.4354 100 0.755 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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