PCP2 - SULSO - GREMLIN Contacts

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PCP2 - Pyrrolidone-carboxylate peptidase 2

UniProt:	P58202	Sequences: MTVLLFGFEPFLEYKENPSQLIVEALNGSTILKEEVKGVILPVEYEKIEDLIVTKIREMKPILTLGIGVAPGRAKITPEKIAINYKYSREGDNAGKKYKGEKIDPLGQDGIFTNIPVEDLVDLLNENGIPAELSLSAGSYLCNNAMYIIIREARKYNSLGGFIHVPLHESYAARIQRPIPSMSLDTMIRGIRLSMEFILTNKKENLTFS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	209 (193)
Sequences:	1454 (1111)
Seq/√Len:	79.9

BACSU - PCP
SULSO - PCP2 PCP1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
82_A	146_M	3.974	1.00
146_M	150_I	3.410	1.00
75_K	132_E	3.212	1.00
49_E	148_I	3.112	1.00
86_K	144_N	3.095	1.00
45_Y	88_S	3.069	1.00
44_E	94_A	2.980	1.00
20_Q	40_I	2.803	1.00
21_L	24_E	2.710	1.00
47_K	94_A	2.577	1.00
78_P	121_V	2.510	1.00
22_I	67_I	2.489	1.00
9_E	43_V	2.449	1.00
23_V	67_I	2.344	1.00
73_R	77_T	2.344	1.00
2_T	35_E	2.291	1.00
107_G	147_Y	2.249	1.00
44_E	47_K	2.235	1.00
66_G	149_I	2.155	1.00
85_Y	135_L	2.152	1.00
39_V	55_K	2.068	1.00
37_K	59_M	2.001	1.00
104_D	151_R	1.986	1.00
5_L	26_L	1.985	1.00
29_S	192_R	1.983	1.00
65_L	163_I	1.918	1.00
25_A	188_I	1.826	1.00
14_Y	69_V	1.800	1.00
71_P	167_L	1.776	1.00
80_K	135_L	1.759	1.00
153_A	160_G	1.756	1.00
163_I	194_S	1.754	1.00
70_A	73_R	1.753	1.00
52_I	149_I	1.747	1.00
41_L	145_A	1.721	1.00
67_I	191_I	1.676	1.00
69_V	171_Y	1.674	1.00
150_I	160_G	1.672	1.00
111_I	151_R	1.657	1.00
76_I	190_G	1.607	1.00
22_I	191_I	1.597	1.00
63_L	159_L	1.593	1.00
120_L	124_L	1.582	1.00
120_L	194_S	1.569	1.00
53_V	152_E	1.540	0.99
153_A	158_S	1.530	0.99
27_N	30_T	1.530	0.99
124_L	194_S	1.512	0.99
123_L	193_L	1.509	0.99
169_E	181_S	1.491	0.99
45_Y	141_L	1.460	0.99
149_I	160_G	1.403	0.99
100_G	118_E	1.393	0.99
39_V	59_M	1.385	0.99
129_I	186_T	1.369	0.99
146_M	161_G	1.333	0.98
54_T	58_E	1.328	0.98
108_Q	151_R	1.325	0.98
22_I	165_V	1.313	0.98
28_G	38_G	1.292	0.98
48_I	144_N	1.283	0.98
39_V	58_E	1.276	0.98
117_V	133_L	1.265	0.98
66_G	160_G	1.260	0.98
165_V	187_M	1.236	0.97
124_L	193_L	1.218	0.97
76_I	163_I	1.210	0.97
50_D	54_T	1.192	0.97
16_E	21_L	1.192	0.97
186_T	189_R	1.176	0.97
48_I	141_L	1.171	0.96
56_I	152_E	1.136	0.96
42_P	51_L	1.129	0.96
56_I	61_P	1.110	0.95
83_I	139_S	1.107	0.95
56_I	158_S	1.103	0.95
84_N	143_N	1.100	0.95
103_I	144_N	1.098	0.95
117_V	135_L	1.091	0.95
56_I	64_T	1.088	0.95
127_N	193_L	1.087	0.95
27_N	38_G	1.081	0.94
48_I	145_A	1.079	0.94
122_D	126_E	1.078	0.94
41_L	52_I	1.074	0.94
151_R	155_K	1.056	0.94
3_V	63_L	1.044	0.93
7_G	23_V	1.043	0.93
66_G	145_A	1.042	0.93
57_R	156_Y	1.037	0.93
9_E	41_L	1.036	0.93
23_V	38_G	1.029	0.93
135_L	139_S	1.024	0.93
53_V	156_Y	1.019	0.92
9_E	93_N	1.015	0.92
37_K	55_K	1.013	0.92
55_K	59_M	1.011	0.92
68_G	142_C	1.001	0.92
19_S	41_L	0.990	0.91
47_K	50_D	0.982	0.91
137_A	143_N	0.964	0.90
103_I	106_L	0.956	0.90
144_N	148_I	0.956	0.90
87_Y	100_G	0.951	0.90
20_Q	24_E	0.946	0.89
113_T	161_G	0.943	0.89
5_L	27_N	0.930	0.89
109_D	112_F	0.913	0.88
49_E	145_A	0.904	0.87
113_T	146_M	0.900	0.87
18_P	69_V	0.897	0.87
102_K	109_D	0.895	0.87
52_I	66_G	0.892	0.86
49_E	144_N	0.879	0.86
189_R	192_R	0.878	0.86
81_I	110_G	0.868	0.85
7_G	20_Q	0.868	0.85
78_P	117_V	0.866	0.85
123_L	126_E	0.862	0.84
22_I	187_M	0.851	0.84
127_N	189_R	0.850	0.84
149_I	153_A	0.848	0.83
83_I	143_N	0.839	0.83
28_G	31_I	0.839	0.83
2_T	37_K	0.837	0.83
78_P	113_T	0.837	0.83
57_R	60_K	0.836	0.83
118_E	133_L	0.828	0.82
75_K	78_P	0.826	0.82
57_R	152_E	0.823	0.82
124_L	129_I	0.815	0.81
8_F	141_L	0.811	0.81
172_A	181_S	0.808	0.80
55_K	58_E	0.806	0.80
139_S	143_N	0.805	0.80
136_S	139_S	0.804	0.80
106_L	151_R	0.801	0.80
115_I	161_G	0.800	0.80
51_L	54_T	0.793	0.79
90_E	97_K	0.792	0.79
80_K	85_Y	0.792	0.79
117_V	121_V	0.792	0.79
68_G	162_F	0.787	0.79
120_L	193_L	0.767	0.77
66_G	88_S	0.765	0.77
129_I	190_G	0.763	0.76
163_I	191_I	0.759	0.76
6_F	66_G	0.758	0.76
10_P	20_Q	0.749	0.75
77_T	132_E	0.749	0.75
87_Y	118_E	0.748	0.75
152_E	155_K	0.747	0.75
86_K	103_I	0.732	0.73
184_L	187_M	0.731	0.73
139_S	161_G	0.730	0.73
104_D	148_I	0.729	0.73
20_Q	165_V	0.722	0.72
121_V	133_L	0.719	0.72
37_K	61_P	0.716	0.72
67_I	165_V	0.714	0.72
3_V	34_E	0.714	0.72
112_F	146_M	0.700	0.70
2_T	59_M	0.698	0.70
70_A	77_T	0.696	0.70
66_G	150_I	0.696	0.70
78_P	131_A	0.695	0.70
142_C	162_F	0.692	0.69
87_Y	143_N	0.691	0.69
124_L	190_G	0.690	0.69
21_L	25_A	0.690	0.69
45_Y	98_Y	0.685	0.68
190_G	194_S	0.684	0.68
89_R	97_K	0.683	0.68
8_F	145_A	0.680	0.68
81_I	112_F	0.678	0.68
44_E	96_K	0.677	0.68
30_T	33_K	0.677	0.68
88_S	98_Y	0.676	0.67
129_I	193_L	0.676	0.67
80_K	100_G	0.673	0.67
27_N	192_R	0.666	0.66
68_G	164_H	0.666	0.66
19_S	67_I	0.665	0.66
52_I	145_A	0.664	0.66
167_L	171_Y	0.662	0.66
80_K	118_E	0.657	0.65
168_H	184_L	0.656	0.65
54_T	57_R	0.655	0.65
115_I	120_L	0.653	0.65
83_I	137_A	0.652	0.65
46_E	96_K	0.651	0.65
48_I	86_K	0.650	0.64
87_Y	103_I	0.650	0.64
102_K	105_P	0.649	0.64
108_Q	154_R	0.646	0.64
116_P	161_G	0.639	0.63
169_E	182_M	0.636	0.63
52_I	152_E	0.635	0.63
152_E	156_Y	0.634	0.63
26_L	31_I	0.634	0.63
142_C	164_H	0.633	0.62
47_K	51_L	0.633	0.62
9_E	140_Y	0.633	0.62
7_G	18_P	0.630	0.62
99_K	118_E	0.630	0.62
184_L	188_I	0.626	0.62
19_S	165_V	0.625	0.61
83_I	136_S	0.624	0.61
69_V	167_L	0.619	0.61
80_K	117_V	0.617	0.60
148_I	153_A	0.616	0.60
65_L	149_I	0.614	0.60
8_F	140_Y	0.610	0.60
109_D	154_R	0.609	0.59
73_R	136_S	0.605	0.59
3_V	65_L	0.605	0.59
112_F	139_S	0.596	0.58
43_V	141_L	0.596	0.58
168_H	171_Y	0.596	0.58
11_F	71_P	0.596	0.58
83_I	112_F	0.594	0.58
77_T	121_V	0.594	0.58
30_T	34_E	0.594	0.58
85_Y	117_V	0.588	0.57
20_Q	23_V	0.587	0.57
25_A	185_D	0.585	0.56
86_K	101_E	0.585	0.56
66_G	153_A	0.582	0.56
43_V	140_Y	0.577	0.55
111_I	154_R	0.576	0.55
27_N	31_I	0.575	0.55
74_A	78_P	0.574	0.55
11_F	93_N	0.574	0.55
49_E	53_V	0.569	0.54
124_L	131_A	0.569	0.54
24_E	40_I	0.568	0.54
14_Y	167_L	0.568	0.54
86_K	140_Y	0.566	0.54
114_N	153_A	0.565	0.54
85_Y	136_S	0.565	0.54
113_T	150_I	0.564	0.54
22_I	145_A	0.564	0.54
39_V	51_L	0.555	0.53
180_P	183_S	0.553	0.52
9_E	40_I	0.553	0.52
15_K	170_S	0.552	0.52
114_N	154_R	0.552	0.52
19_S	23_V	0.550	0.52
182_M	190_G	0.549	0.52
75_K	189_R	0.549	0.52
53_V	148_I	0.543	0.51
54_T	156_Y	0.542	0.51
63_L	173_A	0.542	0.51
163_I	193_L	0.542	0.51
23_V	191_I	0.541	0.51
53_V	57_R	0.541	0.51
140_Y	144_N	0.538	0.50
28_G	35_E	0.535	0.50
4_L	73_R	0.535	0.50
117_V	168_H	0.535	0.50
169_E	187_M	0.535	0.50
46_E	113_T	0.533	0.50
32_L	157_N	0.526	0.49
20_Q	38_G	0.526	0.49
72_G	167_L	0.526	0.49
46_E	144_N	0.524	0.49
134_S	137_A	0.524	0.49
16_E	168_H	0.524	0.49
50_D	106_L	0.521	0.48
103_I	143_N	0.520	0.48
168_H	188_I	0.520	0.48
114_N	160_G	0.518	0.48
123_L	127_N	0.515	0.47
87_Y	116_P	0.515	0.47
45_Y	87_Y	0.514	0.47
185_D	189_R	0.513	0.47
130_P	137_A	0.513	0.47
174_R	179_I	0.512	0.47
30_T	38_G	0.510	0.47
17_N	68_G	0.510	0.47
45_Y	86_K	0.509	0.47
78_P	182_M	0.506	0.46
51_L	55_K	0.505	0.46
126_E	192_R	0.503	0.46
43_V	69_V	0.503	0.46
26_L	30_T	0.502	0.46
180_P	190_G	0.502	0.46
85_Y	139_S	0.501	0.46
82_A	145_A	0.500	0.45
29_S	35_E	0.500	0.45

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1a2zA	4	1	100	0.126	Contact Map
3ro0A	3	0.9809	100	0.128	Contact Map
3giuA	2	0.9856	100	0.129	Contact Map
1x10A	4	0.9713	100	0.131	Contact Map
3lacA	3	0.9617	100	0.133	Contact Map
1iu8A	3	0.9761	100	0.134	Contact Map
4hpsA	3	0.9713	100	0.134	Contact Map
2ebjA	3	0.9187	100	0.153	Contact Map
2is8A	3	0.7464	30.3	0.946	Contact Map
3mnfA	4	0.9187	23.3	0.949	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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