RS7 - SULSO - GREMLIN Contacts

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RS7 - 30S ribosomal protein S7

UniProt:	P35026	Sequences: MSLENLQLDIKVFGKWDTKVEIRDPSLKKYISLMPVYLPHTGGRHEHRRFGKAKVPIVERLINQIMRPGRNKGKKHLAYNIVKLAFDIIYLKTGQNPIQVLVRAIENSAPREEVTRIMYGGIVYYVAVDVSPQRRIDLALRHIATGAKDASFNNPKPIEEVLAEEIIAAANNDSKSFAIKRKEEIERIALSSR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	193 (150)
Sequences:	727 (328)
Seq/√Len:	26.8

ECOLI - RS7
BACSU - RS7
HALSA - RS7
SULSO - RS7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
88_I	163_A	3.205	1.00
84_L	159_E	3.111	1.00
125_Y	192_S	3.028	1.00
109_A	135_R	2.662	0.99
107_N	134_R	2.570	0.99
113_E	134_R	2.562	0.99
81_I	158_I	2.458	0.99
169_A	178_A	2.390	0.99
138_L	142_H	2.169	0.97
86_F	101_L	2.149	0.97
61_L	140_L	1.995	0.96
67_R	71_N	1.914	0.95
60_R	96_N	1.879	0.94
61_L	101_L	1.871	0.94
57_I	100_V	1.853	0.94
147_A	162_L	1.845	0.94
108_S	143_I	1.838	0.93
120_G	124_Y	1.816	0.93
55_V	102_V	1.804	0.93
114_V	125_Y	1.803	0.93
87_D	90_Y	1.798	0.93
114_V	141_R	1.788	0.92
118_M	125_Y	1.785	0.92
99_Q	103_R	1.741	0.91
117_I	124_Y	1.695	0.90
62_I	79_Y	1.681	0.90
66_M	69_G	1.654	0.89
50_F	65_I	1.645	0.89
146_G	178_A	1.644	0.89
107_N	172_N	1.597	0.87
88_I	167_I	1.557	0.86
98_I	145_T	1.504	0.84
95_Q	99_Q	1.485	0.83
95_Q	100_V	1.470	0.82
181_R	184_E	1.469	0.82
138_L	141_R	1.460	0.82
61_L	162_L	1.413	0.80
103_R	170_A	1.403	0.79
118_M	192_S	1.400	0.79
180_K	184_E	1.381	0.78
137_D	182_K	1.377	0.78
61_L	121_G	1.313	0.75
95_Q	103_R	1.298	0.74
131_S	183_E	1.287	0.73
96_N	133_Q	1.270	0.72
69_G	72_K	1.262	0.71
147_A	166_I	1.260	0.71
167_I	170_A	1.247	0.71
104_A	107_N	1.245	0.70
93_T	167_I	1.235	0.70
52_K	96_N	1.225	0.69
45_H	55_V	1.224	0.69
108_S	166_I	1.201	0.68
82_V	86_F	1.196	0.67
108_S	178_A	1.188	0.67
133_Q	137_D	1.188	0.67
123_V	127_A	1.187	0.67
58_V	86_F	1.185	0.67
66_M	144_A	1.185	0.67
124_Y	180_K	1.174	0.66
89_I	100_V	1.149	0.64
114_V	185_I	1.139	0.63
148_K	158_I	1.134	0.63
117_I	125_Y	1.134	0.63
52_K	63_N	1.133	0.63
58_V	66_M	1.133	0.63
95_Q	149_D	1.127	0.63
76_H	80_N	1.112	0.62
81_I	159_E	1.111	0.61
78_A	142_H	1.111	0.61
118_M	124_Y	1.104	0.61
52_K	128_V	1.094	0.60
39_P	50_F	1.093	0.60
115_T	155_P	1.090	0.60
114_V	142_H	1.089	0.60
97_P	128_V	1.080	0.59
118_M	190_L	1.072	0.59
107_N	113_E	1.068	0.58
101_L	144_A	1.045	0.57
118_M	142_H	1.043	0.57
77_L	147_A	1.040	0.56
126_V	130_V	1.039	0.56
112_E	146_G	1.037	0.56
96_N	111_R	1.028	0.55
64_Q	68_P	1.025	0.55
95_Q	172_N	1.024	0.55
109_A	190_L	1.011	0.54
168_A	176_S	1.003	0.54
89_I	93_T	1.002	0.53
72_K	192_S	0.993	0.53
88_I	112_E	0.989	0.52
57_I	135_R	0.983	0.52
165_E	176_S	0.953	0.50
183_E	190_L	0.951	0.50
105_I	138_L	0.945	0.49
145_T	170_A	0.940	0.49
170_A	187_R	0.927	0.48
115_T	126_V	0.921	0.47
112_E	186_E	0.907	0.46
69_G	82_V	0.902	0.46
64_Q	140_L	0.893	0.45
99_Q	146_G	0.890	0.45
64_Q	142_H	0.874	0.44
101_L	183_E	0.852	0.42
145_T	149_D	0.847	0.42
46_E	127_A	0.843	0.42
172_N	182_K	0.829	0.41
118_M	126_V	0.825	0.40
55_V	127_A	0.821	0.40
128_V	131_S	0.820	0.40
109_A	143_I	0.817	0.40
179_I	182_K	0.812	0.39
100_V	175_K	0.811	0.39
96_N	136_I	0.802	0.39
157_P	167_I	0.801	0.39
102_V	107_N	0.800	0.39
138_L	180_K	0.799	0.38
61_L	82_V	0.792	0.38
52_K	94_G	0.786	0.38
85_A	170_A	0.785	0.37
124_Y	138_L	0.778	0.37
125_Y	190_L	0.777	0.37
64_Q	67_R	0.771	0.36
96_N	131_S	0.770	0.36
160_E	167_I	0.766	0.36
103_R	106_E	0.759	0.36
127_A	186_E	0.756	0.35
115_T	182_K	0.748	0.35
111_R	135_R	0.743	0.35
74_K	85_A	0.743	0.35
112_E	177_F	0.741	0.34
82_V	166_I	0.740	0.34
143_I	169_A	0.736	0.34
53_A	102_V	0.733	0.34
106_E	166_I	0.732	0.34
88_I	179_I	0.731	0.34
156_K	193_R	0.721	0.33
138_L	184_E	0.719	0.33
125_Y	138_L	0.714	0.33
99_Q	102_V	0.712	0.32
125_Y	188_I	0.707	0.32
92_K	157_P	0.705	0.32
118_M	141_R	0.705	0.32
54_K	58_V	0.704	0.32
51_G	191_S	0.704	0.32
145_T	177_F	0.704	0.32
76_H	159_E	0.701	0.32
67_R	70_R	0.700	0.32
83_K	117_I	0.700	0.32
106_E	109_A	0.697	0.32
59_E	109_A	0.697	0.32
120_G	171_N	0.693	0.31
134_R	162_L	0.691	0.31
165_E	169_A	0.676	0.30
58_V	82_V	0.675	0.30
53_A	133_Q	0.675	0.30
66_M	135_R	0.666	0.30
149_D	157_P	0.665	0.29
44_R	120_G	0.658	0.29
156_K	187_R	0.658	0.29
57_I	105_I	0.657	0.29
154_N	175_K	0.651	0.29
118_M	188_I	0.645	0.28
111_R	187_R	0.644	0.28
44_R	116_R	0.644	0.28
172_N	179_I	0.642	0.28
140_L	187_R	0.630	0.27
143_I	171_N	0.628	0.27
94_G	147_A	0.626	0.27
59_E	112_E	0.624	0.27
78_A	185_I	0.623	0.27
71_N	81_I	0.622	0.27
167_I	172_N	0.607	0.26
144_A	186_E	0.605	0.26
114_V	117_I	0.605	0.26
95_Q	106_E	0.604	0.26
80_N	89_I	0.604	0.26
156_K	180_K	0.602	0.26
65_I	88_I	0.601	0.26
46_E	101_L	0.599	0.26
61_L	144_A	0.596	0.25
105_I	181_R	0.592	0.25
117_I	126_V	0.584	0.25
118_M	123_V	0.581	0.25
118_M	127_A	0.579	0.24
52_K	111_R	0.576	0.24
124_Y	153_N	0.575	0.24
158_I	161_V	0.574	0.24
74_K	153_N	0.572	0.24
78_A	170_A	0.569	0.24
114_V	188_I	0.568	0.24
90_Y	145_T	0.567	0.24
116_R	123_V	0.565	0.24
45_H	127_A	0.563	0.24
91_L	136_I	0.562	0.23
42_G	192_S	0.560	0.23
111_R	163_A	0.560	0.23
171_N	190_L	0.557	0.23
41_T	98_I	0.556	0.23
83_K	158_I	0.546	0.23
125_Y	180_K	0.545	0.23
124_Y	192_S	0.544	0.23
88_I	160_E	0.542	0.22
183_E	188_I	0.541	0.22
114_V	123_V	0.541	0.22
105_I	175_K	0.532	0.22
39_P	114_V	0.531	0.22
100_V	153_N	0.531	0.22
46_E	144_A	0.529	0.22
81_I	123_V	0.527	0.22
62_I	77_L	0.524	0.21
82_V	162_L	0.522	0.21
138_L	166_I	0.521	0.21
60_R	169_A	0.519	0.21
93_T	96_N	0.518	0.21
50_F	53_A	0.515	0.21
124_Y	190_L	0.513	0.21
75_K	96_N	0.513	0.21
116_R	179_I	0.512	0.21
113_E	183_E	0.512	0.21
56_P	65_I	0.507	0.21
69_G	148_K	0.504	0.20
53_A	56_P	0.502	0.20
160_E	180_K	0.501	0.20
119_Y	129_D	0.500	0.20

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3j7aI	1	0.9119	100	0.09	Contact Map
4bpeG	1	0.9482	100	0.094	Contact Map
3zey2	1	0.9637	100	0.099	Contact Map
1iqvA	1	0.8549	100	0.101	Contact Map
4ujpG	1	1	100	0.106	Contact Map
3j38F	1	0.9585	100	0.12	Contact Map
4tp8G	1	0.7668	100	0.315	Contact Map
4kiyG	1	0.7668	100	0.316	Contact Map
1rssA	1	0.7047	100	0.317	Contact Map
1husA	1	0.7202	100	0.317	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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