GREMLIN Database
RS7 - 30S ribosomal protein S7
UniProt: P35026 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 193 (150)
Sequences: 727 (328)
Seq/√Len: 26.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
88_I163_A3.2051.00
84_L159_E3.1111.00
125_Y192_S3.0281.00
109_A135_R2.6620.99
107_N134_R2.5700.99
113_E134_R2.5620.99
81_I158_I2.4580.99
169_A178_A2.3900.99
138_L142_H2.1690.97
86_F101_L2.1490.97
61_L140_L1.9950.96
67_R71_N1.9140.95
60_R96_N1.8790.94
61_L101_L1.8710.94
57_I100_V1.8530.94
147_A162_L1.8450.94
108_S143_I1.8380.93
120_G124_Y1.8160.93
55_V102_V1.8040.93
114_V125_Y1.8030.93
87_D90_Y1.7980.93
114_V141_R1.7880.92
118_M125_Y1.7850.92
99_Q103_R1.7410.91
117_I124_Y1.6950.90
62_I79_Y1.6810.90
66_M69_G1.6540.89
50_F65_I1.6450.89
146_G178_A1.6440.89
107_N172_N1.5970.87
88_I167_I1.5570.86
98_I145_T1.5040.84
95_Q99_Q1.4850.83
95_Q100_V1.4700.82
181_R184_E1.4690.82
138_L141_R1.4600.82
61_L162_L1.4130.80
103_R170_A1.4030.79
118_M192_S1.4000.79
180_K184_E1.3810.78
137_D182_K1.3770.78
61_L121_G1.3130.75
95_Q103_R1.2980.74
131_S183_E1.2870.73
96_N133_Q1.2700.72
69_G72_K1.2620.71
147_A166_I1.2600.71
167_I170_A1.2470.71
104_A107_N1.2450.70
93_T167_I1.2350.70
52_K96_N1.2250.69
45_H55_V1.2240.69
108_S166_I1.2010.68
82_V86_F1.1960.67
108_S178_A1.1880.67
133_Q137_D1.1880.67
123_V127_A1.1870.67
58_V86_F1.1850.67
66_M144_A1.1850.67
124_Y180_K1.1740.66
89_I100_V1.1490.64
114_V185_I1.1390.63
148_K158_I1.1340.63
117_I125_Y1.1340.63
52_K63_N1.1330.63
58_V66_M1.1330.63
95_Q149_D1.1270.63
76_H80_N1.1120.62
81_I159_E1.1110.61
78_A142_H1.1110.61
118_M124_Y1.1040.61
52_K128_V1.0940.60
39_P50_F1.0930.60
115_T155_P1.0900.60
114_V142_H1.0890.60
97_P128_V1.0800.59
118_M190_L1.0720.59
107_N113_E1.0680.58
101_L144_A1.0450.57
118_M142_H1.0430.57
77_L147_A1.0400.56
126_V130_V1.0390.56
112_E146_G1.0370.56
96_N111_R1.0280.55
64_Q68_P1.0250.55
95_Q172_N1.0240.55
109_A190_L1.0110.54
168_A176_S1.0030.54
89_I93_T1.0020.53
72_K192_S0.9930.53
88_I112_E0.9890.52
57_I135_R0.9830.52
165_E176_S0.9530.50
183_E190_L0.9510.50
105_I138_L0.9450.49
145_T170_A0.9400.49
170_A187_R0.9270.48
115_T126_V0.9210.47
112_E186_E0.9070.46
69_G82_V0.9020.46
64_Q140_L0.8930.45
99_Q146_G0.8900.45
64_Q142_H0.8740.44
101_L183_E0.8520.42
145_T149_D0.8470.42
46_E127_A0.8430.42
172_N182_K0.8290.41
118_M126_V0.8250.40
55_V127_A0.8210.40
128_V131_S0.8200.40
109_A143_I0.8170.40
179_I182_K0.8120.39
100_V175_K0.8110.39
96_N136_I0.8020.39
157_P167_I0.8010.39
102_V107_N0.8000.39
138_L180_K0.7990.38
61_L82_V0.7920.38
52_K94_G0.7860.38
85_A170_A0.7850.37
124_Y138_L0.7780.37
125_Y190_L0.7770.37
64_Q67_R0.7710.36
96_N131_S0.7700.36
160_E167_I0.7660.36
103_R106_E0.7590.36
127_A186_E0.7560.35
115_T182_K0.7480.35
111_R135_R0.7430.35
74_K85_A0.7430.35
112_E177_F0.7410.34
82_V166_I0.7400.34
143_I169_A0.7360.34
53_A102_V0.7330.34
106_E166_I0.7320.34
88_I179_I0.7310.34
156_K193_R0.7210.33
138_L184_E0.7190.33
125_Y138_L0.7140.33
99_Q102_V0.7120.32
125_Y188_I0.7070.32
92_K157_P0.7050.32
118_M141_R0.7050.32
54_K58_V0.7040.32
51_G191_S0.7040.32
145_T177_F0.7040.32
76_H159_E0.7010.32
67_R70_R0.7000.32
83_K117_I0.7000.32
106_E109_A0.6970.32
59_E109_A0.6970.32
120_G171_N0.6930.31
134_R162_L0.6910.31
165_E169_A0.6760.30
58_V82_V0.6750.30
53_A133_Q0.6750.30
66_M135_R0.6660.30
149_D157_P0.6650.29
44_R120_G0.6580.29
156_K187_R0.6580.29
57_I105_I0.6570.29
154_N175_K0.6510.29
118_M188_I0.6450.28
111_R187_R0.6440.28
44_R116_R0.6440.28
172_N179_I0.6420.28
140_L187_R0.6300.27
143_I171_N0.6280.27
94_G147_A0.6260.27
59_E112_E0.6240.27
78_A185_I0.6230.27
71_N81_I0.6220.27
167_I172_N0.6070.26
144_A186_E0.6050.26
114_V117_I0.6050.26
95_Q106_E0.6040.26
80_N89_I0.6040.26
156_K180_K0.6020.26
65_I88_I0.6010.26
46_E101_L0.5990.26
61_L144_A0.5960.25
105_I181_R0.5920.25
117_I126_V0.5840.25
118_M123_V0.5810.25
118_M127_A0.5790.24
52_K111_R0.5760.24
124_Y153_N0.5750.24
158_I161_V0.5740.24
74_K153_N0.5720.24
78_A170_A0.5690.24
114_V188_I0.5680.24
90_Y145_T0.5670.24
116_R123_V0.5650.24
45_H127_A0.5630.24
91_L136_I0.5620.23
42_G192_S0.5600.23
111_R163_A0.5600.23
171_N190_L0.5570.23
41_T98_I0.5560.23
83_K158_I0.5460.23
125_Y180_K0.5450.23
124_Y192_S0.5440.23
88_I160_E0.5420.22
183_E188_I0.5410.22
114_V123_V0.5410.22
105_I175_K0.5320.22
39_P114_V0.5310.22
100_V153_N0.5310.22
46_E144_A0.5290.22
81_I123_V0.5270.22
62_I77_L0.5240.21
82_V162_L0.5220.21
138_L166_I0.5210.21
60_R169_A0.5190.21
93_T96_N0.5180.21
50_F53_A0.5150.21
124_Y190_L0.5130.21
75_K96_N0.5130.21
116_R179_I0.5120.21
113_E183_E0.5120.21
56_P65_I0.5070.21
69_G148_K0.5040.20
53_A56_P0.5020.20
160_E180_K0.5010.20
119_Y129_D0.5000.20
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3j7aI 1 0.9119 100 0.09 Contact Map
4bpeG 1 0.9482 100 0.094 Contact Map
3zey2 1 0.9637 100 0.099 Contact Map
1iqvA 1 0.8549 100 0.101 Contact Map
4ujpG 1 1 100 0.106 Contact Map
3j38F 1 0.9585 100 0.12 Contact Map
4tp8G 1 0.7668 100 0.315 Contact Map
4kiyG 1 0.7668 100 0.316 Contact Map
1rssA 1 0.7047 100 0.317 Contact Map
1husA 1 0.7202 100 0.317 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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