PURE - SULSO - GREMLIN Contacts

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PURE - N5-carboxyaminoimidazole ribonucleotide mutase

UniProt:	O06456	Sequences: MPKVAVIMGSKNDWEYMREAVEILKQFGIDYEARVVSAHRTPEFMMQYAKEAEKRGIEVIIAGAGGAAHLPGMVASLTSLPVIGVPIPSKNLNGLDSLLSIVQMPYGVPVATVAIGGAKNAALLAIRILGIKYKELADKIKKFSEDMRNDVLSTRLEA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	158 (151)
Sequences:	3162 (1432)
Seq/√Len:	116.5

ECOLI - PURE
BACSU - PURE
HALSA - Q9HRM2
SULSO - PURE

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
5_A	48_Y	2.568	1.00
53_E	141_K	2.419	1.00
127_R	144_S	2.347	1.00
113_V	124_L	2.333	1.00
71_P	101_I	2.286	1.00
95_L	99_L	2.267	1.00
83_I	113_V	2.258	1.00
106_Y	119_K	2.233	1.00
7_I	74_V	2.165	1.00
58_E	132_K	2.165	1.00
46_M	77_L	2.159	1.00
6_V	21_V	2.132	1.00
3_K	58_E	2.119	1.00
27_F	126_I	2.107	1.00
43_E	50_K	2.010	1.00
34_R	44_F	1.972	1.00
53_E	137_A	1.943	1.00
25_K	31_Y	1.910	1.00
5_A	57_I	1.891	1.00
129_L	136_L	1.850	1.00
21_V	31_Y	1.822	1.00
17_M	63_G	1.768	1.00
29_I	126_I	1.756	1.00
26_Q	146_D	1.727	1.00
88_P	91_N	1.700	1.00
47_Q	51_E	1.684	1.00
18_R	22_E	1.667	1.00
17_M	85_V	1.655	1.00
32_E	55_R	1.602	1.00
53_E	79_S	1.598	1.00
114_A	117_G	1.585	1.00
83_I	128_I	1.569	1.00
88_P	93_N	1.564	1.00
3_K	30_D	1.562	1.00
143_F	147_M	1.561	1.00
92_L	115_I	1.559	1.00
149_N	153_S	1.556	1.00
145_E	149_N	1.549	1.00
44_F	152_L	1.534	1.00
51_E	54_K	1.519	1.00
36_V	45_M	1.513	1.00
98_L	102_V	1.470	1.00
88_P	116_G	1.464	1.00
41_T	151_V	1.457	1.00
130_G	136_L	1.456	1.00
142_K	146_D	1.454	1.00
126_I	136_L	1.454	1.00
23_I	122_A	1.420	1.00
79_S	141_K	1.419	1.00
135_E	139_K	1.393	1.00
21_V	33_A	1.378	1.00
138_D	142_K	1.351	1.00
145_E	148_R	1.341	1.00
83_I	111_A	1.335	1.00
146_D	150_D	1.291	1.00
19_E	22_E	1.289	1.00
28_G	139_K	1.280	0.99
79_S	137_A	1.263	0.99
60_I	80_L	1.211	0.99
48_Y	57_I	1.193	0.99
23_I	119_K	1.177	0.99
27_F	139_K	1.174	0.99
32_E	57_I	1.171	0.99
19_E	119_K	1.152	0.99
98_L	115_I	1.122	0.99
50_K	77_L	1.115	0.99
49_A	60_I	1.114	0.99
41_T	44_F	1.113	0.99
43_E	77_L	1.111	0.99
58_E	133_Y	1.105	0.98
45_M	74_V	1.104	0.98
23_I	26_Q	1.088	0.98
89_S	93_N	1.064	0.98
21_V	25_K	1.058	0.98
15_E	18_R	1.056	0.98
22_E	26_Q	1.052	0.98
66_G	90_K	1.035	0.98
123_L	126_I	1.025	0.98
14_W	21_V	1.001	0.97
128_I	131_I	1.001	0.97
43_E	47_Q	0.993	0.97
111_A	124_L	0.969	0.97
58_E	131_I	0.964	0.96
45_M	49_A	0.949	0.96
16_Y	88_P	0.942	0.96
16_Y	116_G	0.940	0.96
4_V	59_V	0.931	0.96
23_I	123_L	0.927	0.96
14_W	33_A	0.919	0.95
146_D	149_N	0.918	0.95
45_M	73_M	0.912	0.95
141_K	145_E	0.907	0.95
79_S	140_I	0.906	0.95
16_Y	87_I	0.903	0.95
23_I	27_F	0.901	0.95
106_Y	117_G	0.900	0.95
122_A	126_I	0.896	0.95
51_E	55_R	0.892	0.94
136_L	139_K	0.892	0.94
43_E	46_M	0.887	0.94
36_V	44_F	0.885	0.94
90_K	97_S	0.883	0.94
20_A	63_G	0.877	0.94
148_R	152_L	0.877	0.94
140_I	144_S	0.868	0.94
73_M	76_S	0.867	0.94
84_G	101_I	0.866	0.94
63_G	87_I	0.864	0.93
138_D	141_K	0.857	0.93
32_E	48_Y	0.856	0.93
119_K	143_F	0.846	0.93
43_E	148_R	0.845	0.93
130_G	140_I	0.840	0.93
66_G	97_S	0.839	0.92
137_A	141_K	0.836	0.92
49_A	74_V	0.833	0.92
49_A	52_A	0.827	0.92
36_V	73_M	0.822	0.92
91_N	95_L	0.821	0.92
150_D	153_S	0.814	0.91
144_S	147_M	0.805	0.91
11_K	35_V	0.802	0.91
20_A	61_I	0.800	0.91
3_K	133_Y	0.795	0.90
142_K	145_E	0.785	0.90
5_A	32_E	0.783	0.90
27_F	143_F	0.765	0.89
83_I	124_L	0.759	0.88
108_V	144_S	0.756	0.88
22_E	25_K	0.751	0.88
59_V	129_L	0.749	0.87
47_Q	50_K	0.747	0.87
17_M	118_A	0.743	0.87
46_M	50_K	0.743	0.87
133_Y	136_L	0.734	0.86
89_S	97_S	0.728	0.86
95_L	115_I	0.717	0.85
62_A	74_V	0.716	0.85
5_A	60_I	0.710	0.85
149_N	152_L	0.707	0.84
134_K	137_A	0.707	0.84
147_M	150_D	0.702	0.84
44_F	148_R	0.696	0.83
123_L	144_S	0.690	0.83
7_I	48_Y	0.684	0.82
11_K	14_W	0.682	0.82
92_L	102_V	0.679	0.82
58_E	137_A	0.674	0.81
44_F	151_V	0.663	0.80
92_L	98_L	0.662	0.80
7_I	60_I	0.662	0.80
44_F	47_Q	0.661	0.80
16_Y	19_E	0.660	0.80
26_Q	143_F	0.657	0.80
8_M	17_M	0.653	0.79
91_N	115_I	0.648	0.79
53_E	130_G	0.646	0.79
48_Y	55_R	0.644	0.78
4_V	29_I	0.640	0.78
106_Y	114_A	0.640	0.78
24_L	126_I	0.638	0.78
59_V	128_I	0.636	0.77
127_R	140_I	0.634	0.77
124_L	128_I	0.629	0.77
11_K	15_E	0.625	0.76
109_P	140_I	0.623	0.76
5_A	55_R	0.622	0.76
49_A	77_L	0.617	0.75
62_A	71_P	0.616	0.75
63_G	85_V	0.616	0.75
126_I	129_L	0.608	0.74
95_L	102_V	0.607	0.74
92_L	95_L	0.607	0.74
14_W	18_R	0.606	0.74
122_A	127_R	0.603	0.74
66_G	106_Y	0.601	0.73
135_E	138_D	0.600	0.73
11_K	150_D	0.598	0.73
113_V	128_I	0.594	0.73
45_M	71_P	0.593	0.72
29_I	136_L	0.589	0.72
42_P	76_S	0.584	0.71
46_M	49_A	0.583	0.71
49_A	80_L	0.581	0.71
57_I	80_L	0.571	0.70
97_S	100_S	0.571	0.70
89_S	99_L	0.570	0.69
63_G	122_A	0.570	0.69
9_G	13_D	0.569	0.69
62_A	101_I	0.563	0.69
26_Q	139_K	0.560	0.68
89_S	114_A	0.558	0.68
71_P	84_G	0.556	0.68
113_V	117_G	0.554	0.67
11_K	108_V	0.554	0.67
25_K	28_G	0.552	0.67
3_K	57_I	0.551	0.67
102_V	115_I	0.547	0.66
52_A	60_I	0.547	0.66
45_M	101_I	0.546	0.66
59_V	113_V	0.545	0.66
57_I	60_I	0.542	0.66
6_V	33_A	0.542	0.66
84_G	109_P	0.538	0.65
130_G	137_A	0.538	0.65
26_Q	119_K	0.538	0.65
136_L	140_I	0.537	0.65
19_E	116_G	0.536	0.65
50_K	54_K	0.533	0.64
47_Q	145_E	0.533	0.64
23_I	143_F	0.531	0.64
93_N	99_L	0.529	0.64
126_I	139_K	0.527	0.64
15_E	19_E	0.520	0.62
135_E	145_E	0.519	0.62
10_S	13_D	0.516	0.62
138_D	145_E	0.512	0.61
36_V	77_L	0.512	0.61
58_E	129_L	0.510	0.61
11_K	33_A	0.508	0.61
108_V	140_I	0.507	0.61
11_K	113_V	0.506	0.60
83_I	125_A	0.506	0.60
39_H	70_L	0.502	0.60
35_V	87_I	0.502	0.60
59_V	125_A	0.500	0.60

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1o4vA	5	0.9937	100	0.133	Contact Map
3lp6A	5	1	100	0.138	Contact Map
3trhA	5	1	100	0.139	Contact Map
4ay3A	2	1	100	0.139	Contact Map
1u11A	6	1	100	0.14	Contact Map
3kuuA	5	1	100	0.141	Contact Map
3orsA	5	1	100	0.141	Contact Map
4grdA	5	1	100	0.143	Contact Map
3oowA	5	0.9937	100	0.148	Contact Map
3rg8A	6	0.981	100	0.178	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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