EH_Signature - PFAM28P - GREMLIN Contacts

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EH_Signature - EH_Signature domain

PFAM:	PF15611	Sequences: QQELEKALERLERRAGKASPPPPPDDEALLAALRRFRRSEDLTWDLASLRELRLVCVLLEEVRPRLRRRCLQGLLSSYFRSFDPLAPRENWEALREFLRRRLPRLGDQWRRLLESFPSGLGPDWVKTLREHRELLTEDPCARLARALLRGDLSELLELLGLLGIPDGSWFWREAVLAYLEALAELPDGEFKERLPELLKLLVGNAPYPGLRDIGLALLLPRYDRCPDEELHEALRDFALDIWGDPRLPSNKWWSGVSEEARAMVRRWLTKEDLRLFFELLAEDDLGRMDPRRKAFWLRYLDQISDAWVALGSDAADAARRRDRDFVEFRARMKGRLARLGSSDNSAFIMRIGDYVVVEFSHSGNACYIYFNYDADPFSLPDLYTGGYLDLSRLRRSELKNRNDAKRRIHSDSGGWQRKFAEW	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_10
Length:	422 (394)
Sequences:	643 (579)
Seq/√Len:	29.2
META:	0.678

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
379_L	382_L	4.261	1.00
409_H	415_W	4.132	1.00
291_R	416_Q	4.023	1.00
305_D	350_R	3.691	1.00
366_C	419_F	3.608	1.00
32_A	36_F	3.443	1.00
346_A	359_F	3.412	1.00
295_F	420_A	3.085	1.00
272_D	306_A	3.016	1.00
344_N	359_F	2.901	1.00
75_L	98_L	2.877	1.00
314_A	317_A	2.789	1.00
380_P	387_Y	2.784	1.00
379_L	383_Y	2.660	1.00
26_D	32_A	2.558	0.99
295_F	299_Y	2.470	0.99
359_F	363_G	2.447	0.99
50_R	53_R	2.370	0.99
28_A	32_A	2.370	0.99
51_E	55_V	2.343	0.99
34_R	38_R	2.319	0.99
29_L	32_A	2.239	0.98
379_L	387_Y	2.236	0.98
156_L	160_G	2.236	0.98
25_D	29_L	2.226	0.98
49_L	53_R	2.213	0.98
138_D	141_A	2.201	0.98
380_P	383_Y	2.196	0.98
299_Y	359_F	2.175	0.98
91_W	95_R	2.122	0.98
348_I	357_V	2.086	0.98
91_W	94_L	2.051	0.97
257_S	260_A	2.026	0.97
364_N	367_Y	1.981	0.97
234_L	238_A	1.888	0.95
128_L	135_L	1.872	0.95
359_F	369_Y	1.872	0.95
170_F	174_A	1.866	0.95
390_L	393_L	1.819	0.94
314_A	345_S	1.785	0.94
219_L	222_Y	1.784	0.94
372_Y	376_P	1.783	0.94
222_Y	231_H	1.776	0.94
126_K	130_E	1.754	0.93
24_P	32_A	1.753	0.93
215_L	219_L	1.742	0.93
289_D	359_F	1.738	0.93
246_R	272_D	1.731	0.93
383_Y	386_G	1.710	0.92
372_Y	377_F	1.709	0.92
309_A	348_I	1.692	0.92
20_P	24_P	1.690	0.92
139_P	143_L	1.680	0.92
48_S	51_E	1.673	0.92
387_Y	390_L	1.646	0.91
346_A	367_Y	1.638	0.91
277_F	298_R	1.636	0.91
399_K	404_A	1.626	0.90
77_S	328_F	1.620	0.90
32_A	35_R	1.618	0.90
276_F	360_S	1.614	0.90
48_S	53_R	1.611	0.90
403_D	406_R	1.574	0.89
26_D	36_F	1.567	0.89
53_R	56_C	1.560	0.88
269_T	306_A	1.556	0.88
269_T	272_D	1.547	0.88
376_P	383_Y	1.544	0.88
16_G	21_P	1.531	0.87
403_D	407_R	1.526	0.87
359_F	367_Y	1.525	0.87
357_V	369_Y	1.512	0.87
22_P	25_D	1.505	0.86
243_G	360_S	1.504	0.86
52_L	55_V	1.502	0.86
26_D	29_L	1.488	0.86
374_A	377_F	1.483	0.86
235_R	277_F	1.481	0.86
149_R	179_L	1.476	0.85
275_L	280_L	1.464	0.85
125_V	128_L	1.438	0.84
253_W	415_W	1.437	0.84
95_R	98_L	1.434	0.84
273_L	308_V	1.427	0.83
239_L	264_V	1.422	0.83
344_N	363_G	1.422	0.83
144_A	148_L	1.421	0.83
356_V	366_C	1.417	0.83
46_L	49_L	1.407	0.82
258_E	262_A	1.406	0.82
376_P	379_L	1.403	0.82
379_L	384_T	1.385	0.81
246_R	308_V	1.379	0.81
283_D	358_E	1.378	0.81
71_L	98_L	1.377	0.81
289_D	307_W	1.377	0.81
382_L	387_Y	1.377	0.81
140_C	144_A	1.371	0.81
357_V	366_C	1.364	0.80
416_Q	419_F	1.357	0.80
20_P	23_P	1.352	0.80
75_L	135_L	1.341	0.79
304_S	350_R	1.336	0.79
101_R	104_R	1.336	0.79
31_A	35_R	1.327	0.79
377_F	381_D	1.326	0.78
314_A	318_A	1.325	0.78
299_Y	363_G	1.323	0.78
46_L	53_R	1.322	0.78
275_L	345_S	1.320	0.78
283_D	362_S	1.319	0.78
78_Y	170_F	1.319	0.78
311_G	363_G	1.318	0.78
30_L	34_R	1.314	0.78
307_W	369_Y	1.298	0.77
381_D	384_T	1.293	0.77
169_W	174_A	1.283	0.76
289_D	347_F	1.278	0.76
50_R	55_V	1.273	0.76
272_D	275_L	1.273	0.76
328_F	332_M	1.272	0.75
386_G	389_D	1.259	0.75
71_L	101_R	1.255	0.74
18_A	22_P	1.253	0.74
292_R	415_W	1.250	0.74
247_L	268_L	1.229	0.73
78_Y	139_P	1.222	0.72
246_R	269_T	1.221	0.72
380_P	384_T	1.217	0.72
242_W	348_I	1.206	0.71
28_A	35_R	1.200	0.71
347_F	364_N	1.194	0.71
310_L	314_A	1.189	0.70
310_L	318_A	1.186	0.70
291_R	411_D	1.179	0.70
306_A	349_M	1.175	0.69
26_D	31_A	1.173	0.69
298_R	420_A	1.170	0.69
25_D	32_A	1.168	0.69
48_S	55_V	1.166	0.69
376_P	380_P	1.159	0.68
329_R	339_L	1.159	0.68
253_W	409_H	1.159	0.68
81_S	84_P	1.156	0.68
291_R	344_N	1.155	0.68
48_S	56_C	1.151	0.68
244_D	293_K	1.149	0.68
27_E	31_A	1.147	0.68
25_D	37_R	1.145	0.67
277_F	347_F	1.140	0.67
70_C	273_L	1.136	0.67
214_G	308_V	1.133	0.67
279_L	310_L	1.132	0.66
24_P	29_L	1.131	0.66
351_I	356_V	1.125	0.66
402_N	405_K	1.122	0.66
24_P	31_A	1.122	0.66
26_D	30_L	1.121	0.66
234_L	296_W	1.121	0.66
246_R	268_L	1.118	0.65
98_L	102_L	1.118	0.65
94_L	98_L	1.114	0.65
293_K	297_L	1.114	0.65
27_E	36_F	1.114	0.65
336_L	339_L	1.114	0.65
234_L	264_V	1.110	0.65
127_T	130_E	1.110	0.65
291_R	298_R	1.107	0.65
144_A	147_L	1.106	0.65
269_T	303_I	1.105	0.65
329_R	332_M	1.103	0.64
47_A	52_L	1.103	0.64
284_D	358_E	1.099	0.64
377_F	380_P	1.085	0.63
267_W	352_G	1.083	0.63
28_A	31_A	1.081	0.63
330_A	333_K	1.080	0.63
393_L	398_L	1.079	0.63
152_L	156_L	1.078	0.63
347_F	361_H	1.078	0.63
156_L	161_L	1.076	0.62
208_P	216_A	1.071	0.62
52_L	56_C	1.071	0.62
33_L	37_R	1.067	0.62
28_A	39_S	1.066	0.62
382_L	390_L	1.063	0.62
283_D	359_F	1.061	0.61
77_S	134_L	1.060	0.61
398_L	404_A	1.060	0.61
47_A	53_R	1.057	0.61
273_L	358_E	1.056	0.61
356_V	368_I	1.056	0.61
253_W	292_R	1.055	0.61
376_P	384_T	1.053	0.61
237_F	295_F	1.051	0.61
78_Y	94_L	1.044	0.60
410_S	413_G	1.041	0.60
358_E	409_H	1.040	0.60
25_D	28_A	1.040	0.60
372_Y	375_D	1.035	0.59
291_R	359_F	1.034	0.59
244_D	295_F	1.029	0.59
311_G	344_N	1.021	0.58
27_E	34_R	1.020	0.58
201_L	235_R	1.012	0.58
215_L	242_W	1.011	0.58
210_L	273_L	1.011	0.58
261_R	308_V	1.010	0.58
31_A	40_E	1.007	0.57
179_L	192_E	0.996	0.56
27_E	35_R	0.995	0.56
222_Y	234_L	0.995	0.56
382_L	385_G	0.993	0.56
288_M	347_F	0.989	0.56
297_L	300_L	0.988	0.56
292_R	409_H	0.987	0.56
210_L	219_L	0.985	0.56
384_T	387_Y	0.984	0.56
48_S	54_L	0.984	0.56
74_L	284_D	0.983	0.55
66_L	307_W	0.980	0.55
180_E	217_L	0.978	0.55
308_V	419_F	0.974	0.55
311_G	346_A	0.968	0.54
288_M	314_A	0.967	0.54
396_S	399_K	0.967	0.54
223_D	260_A	0.966	0.54
344_N	357_V	0.966	0.54
296_W	363_G	0.962	0.54
344_N	369_Y	0.958	0.53
205_A	243_G	0.956	0.53
47_A	50_R	0.952	0.53
277_F	360_S	0.952	0.53
254_S	257_S	0.952	0.53
26_D	33_L	0.948	0.53
144_A	181_A	0.944	0.52
90_N	97_F	0.942	0.52
57_V	68_R	0.942	0.52
394_R	398_L	0.942	0.52
127_T	133_E	0.942	0.52
280_L	349_M	0.941	0.52
320_R	373_D	0.938	0.52
90_N	94_L	0.932	0.51
30_L	35_R	0.931	0.51
50_R	56_C	0.928	0.51
306_A	369_Y	0.928	0.51
217_L	240_D	0.927	0.51
17_K	20_P	0.925	0.51
399_K	403_D	0.919	0.50
47_A	51_E	0.914	0.50
266_R	270_K	0.910	0.50
272_D	305_D	0.909	0.50
50_R	54_L	0.909	0.50
314_A	329_R	0.907	0.49
275_L	307_W	0.906	0.49
298_R	359_F	0.904	0.49
340_G	344_N	0.901	0.49
289_D	362_S	0.900	0.49
242_W	256_V	0.897	0.49
290_P	298_R	0.894	0.48
243_G	352_G	0.894	0.48
98_L	116_F	0.890	0.48
273_L	281_A	0.886	0.48
160_G	164_I	0.885	0.48
135_L	138_D	0.885	0.48
27_E	39_S	0.883	0.48
296_W	367_Y	0.881	0.47
147_L	150_G	0.875	0.47
274_R	278_E	0.875	0.47
75_L	128_L	0.875	0.47
92_E	136_T	0.874	0.47
299_Y	420_A	0.874	0.47
283_D	296_W	0.871	0.47
347_F	359_F	0.871	0.47
222_Y	263_M	0.871	0.47
277_F	280_L	0.870	0.47
269_T	308_V	0.868	0.46
125_V	130_E	0.868	0.46
373_D	376_P	0.865	0.46
261_R	265_R	0.863	0.46
343_D	361_H	0.863	0.46
383_Y	389_D	0.859	0.46
236_D	349_M	0.859	0.46
277_F	299_Y	0.854	0.45
360_S	366_C	0.854	0.45
270_K	297_L	0.853	0.45
298_R	358_E	0.852	0.45
35_R	38_R	0.851	0.45
243_G	253_W	0.850	0.45
269_T	360_S	0.849	0.45
20_P	28_A	0.849	0.45
261_R	310_L	0.845	0.45
16_G	22_P	0.843	0.45
306_A	309_A	0.841	0.44
130_E	139_P	0.841	0.44
139_P	147_L	0.836	0.44
36_F	40_E	0.831	0.44
110_R	116_F	0.829	0.43
102_L	125_V	0.826	0.43
296_W	359_F	0.826	0.43
325_F	330_A	0.825	0.43
49_L	56_C	0.824	0.43
126_K	137_E	0.823	0.43
133_E	140_C	0.823	0.43
180_E	192_E	0.822	0.43
29_L	33_L	0.814	0.42
25_D	33_L	0.812	0.42
51_E	54_L	0.807	0.42
194_L	240_D	0.806	0.42
273_L	416_Q	0.801	0.41
296_W	299_Y	0.799	0.41
139_P	144_A	0.799	0.41
388_L	393_L	0.798	0.41
91_W	98_L	0.796	0.41
82_F	227_D	0.796	0.41
261_R	325_F	0.791	0.41
311_G	339_L	0.791	0.41
323_R	326_V	0.790	0.40
147_L	258_E	0.789	0.40
20_P	25_D	0.788	0.40
404_A	408_I	0.787	0.40
297_L	359_F	0.786	0.40
17_K	23_P	0.783	0.40
215_L	221_R	0.783	0.40
125_V	131_H	0.778	0.40
68_R	78_Y	0.777	0.39
24_P	35_R	0.772	0.39
277_F	283_D	0.770	0.39
292_R	358_E	0.769	0.39
296_W	348_I	0.769	0.39
347_F	367_Y	0.769	0.39
348_I	359_F	0.763	0.38
322_D	325_F	0.762	0.38
22_P	39_S	0.761	0.38
129_R	132_R	0.761	0.38
32_A	37_R	0.761	0.38
244_D	306_A	0.761	0.38
292_R	295_F	0.759	0.38
371_N	376_P	0.758	0.38
373_D	379_L	0.758	0.38
358_E	367_Y	0.755	0.38
235_R	297_L	0.754	0.38
308_V	347_F	0.751	0.38
18_A	23_P	0.750	0.37
47_A	56_C	0.749	0.37
288_M	361_H	0.748	0.37
87_P	184_E	0.746	0.37
275_L	297_L	0.746	0.37
167_G	175_V	0.744	0.37
273_L	306_A	0.742	0.37
130_E	133_E	0.741	0.37
246_R	345_S	0.740	0.37
400_N	406_R	0.739	0.37
279_L	318_A	0.733	0.36
26_D	35_R	0.732	0.36
25_D	39_S	0.732	0.36
383_Y	387_Y	0.732	0.36
283_D	314_A	0.729	0.36
305_D	349_M	0.726	0.36
241_I	288_M	0.725	0.36
169_W	234_L	0.724	0.36
296_W	349_M	0.723	0.36
398_L	408_I	0.721	0.35
102_L	135_L	0.721	0.35
253_W	295_F	0.720	0.35
165_P	171_W	0.716	0.35
217_L	350_R	0.716	0.35
284_D	346_A	0.716	0.35
77_S	255_G	0.714	0.35
234_L	299_Y	0.714	0.35
22_P	27_E	0.713	0.35
341_S	344_N	0.712	0.35
28_A	36_F	0.711	0.35
400_N	405_K	0.711	0.35
20_P	26_D	0.710	0.35
32_A	40_E	0.710	0.35
217_L	307_W	0.710	0.35
19_S	25_D	0.709	0.35
346_A	357_V	0.708	0.34
371_N	375_D	0.707	0.34
33_L	36_F	0.707	0.34
29_L	36_F	0.706	0.34
358_E	415_W	0.706	0.34
404_A	407_R	0.703	0.34
46_L	54_L	0.700	0.34
189_E	230_L	0.698	0.34
25_D	34_R	0.695	0.34
157_E	161_L	0.694	0.33
24_P	33_L	0.693	0.33
291_R	412_S	0.693	0.33
389_D	393_L	0.693	0.33
303_I	307_W	0.691	0.33
31_A	38_R	0.690	0.33
379_L	388_L	0.685	0.33
35_R	39_S	0.683	0.33
30_L	36_F	0.683	0.33
135_L	141_A	0.682	0.33
347_F	369_Y	0.680	0.32
308_V	318_A	0.680	0.32
74_L	276_F	0.675	0.32
372_Y	381_D	0.675	0.32
68_R	332_M	0.675	0.32
17_K	30_L	0.674	0.32
143_L	353_D	0.674	0.32
178_Y	359_F	0.674	0.32
49_L	52_L	0.673	0.32
401_R	405_K	0.672	0.32
379_L	385_G	0.671	0.32
130_E	137_E	0.670	0.32
293_K	366_C	0.668	0.32
291_R	347_F	0.667	0.32
30_L	41_D	0.665	0.31
273_L	360_S	0.662	0.31
272_D	307_W	0.662	0.31
157_E	177_A	0.661	0.31
283_D	367_Y	0.661	0.31
26_D	34_R	0.661	0.31
201_L	299_Y	0.659	0.31
79_F	177_A	0.659	0.31
388_L	394_R	0.658	0.31
246_R	306_A	0.658	0.31
126_K	132_R	0.658	0.31
144_A	183_A	0.658	0.31
386_G	392_R	0.656	0.31
410_S	414_G	0.656	0.31
283_D	289_D	0.654	0.31
257_S	278_E	0.653	0.31
243_G	310_L	0.652	0.31
281_A	293_K	0.652	0.31
30_L	33_L	0.652	0.31
27_E	30_L	0.651	0.31
24_P	30_L	0.649	0.30
193_R	309_A	0.649	0.30
140_C	143_L	0.648	0.30
381_D	388_L	0.648	0.30
121_G	135_L	0.648	0.30
315_A	319_R	0.647	0.30
21_P	29_L	0.646	0.30
196_E	217_L	0.646	0.30
177_A	351_I	0.644	0.30
23_P	26_D	0.643	0.30
24_P	39_S	0.642	0.30
23_P	31_A	0.641	0.30
279_L	288_M	0.641	0.30
373_D	377_F	0.640	0.30
68_R	163_G	0.637	0.30
214_G	295_F	0.637	0.30
152_L	160_G	0.636	0.30
218_L	382_L	0.636	0.30
401_R	406_R	0.635	0.29
359_F	364_N	0.634	0.29
73_G	97_F	0.634	0.29
275_L	310_L	0.634	0.29
286_G	291_R	0.631	0.29
359_F	366_C	0.631	0.29
165_P	175_V	0.628	0.29
32_A	39_S	0.627	0.29
194_L	385_G	0.626	0.29
16_G	29_L	0.625	0.29
289_D	361_H	0.625	0.29
124_W	244_D	0.625	0.29
18_A	39_S	0.625	0.29
22_P	26_D	0.624	0.29
16_G	20_P	0.624	0.29
346_A	363_G	0.624	0.29
154_E	157_E	0.624	0.29
269_T	332_M	0.623	0.29
263_M	289_D	0.621	0.29
118_S	216_A	0.619	0.28
279_L	329_R	0.617	0.28
92_E	96_E	0.616	0.28
143_L	328_F	0.614	0.28
245_P	292_R	0.614	0.28
133_E	143_L	0.613	0.28
17_K	24_P	0.612	0.28
244_D	345_S	0.609	0.28
230_L	273_L	0.608	0.28
299_Y	351_I	0.607	0.28
303_I	350_R	0.607	0.28
357_V	367_Y	0.607	0.28
171_W	175_V	0.607	0.28
235_R	279_L	0.606	0.28
263_M	359_F	0.606	0.28
244_D	281_A	0.605	0.28
328_F	349_M	0.603	0.27
80_R	94_L	0.601	0.27
311_G	314_A	0.600	0.27
405_K	408_I	0.599	0.27
261_R	272_D	0.599	0.27
284_D	360_S	0.598	0.27
385_G	388_L	0.597	0.27
48_S	52_L	0.597	0.27
169_W	178_Y	0.596	0.27
392_R	403_D	0.595	0.27
31_A	36_F	0.594	0.27
284_D	287_R	0.594	0.27
258_E	322_D	0.593	0.27
276_F	293_K	0.592	0.27
110_R	115_S	0.592	0.27
24_P	38_R	0.591	0.27
210_L	213_I	0.590	0.27
17_K	22_P	0.589	0.27
175_V	359_F	0.589	0.27
289_D	296_W	0.588	0.27
161_L	238_A	0.586	0.26
24_P	27_E	0.586	0.26
318_A	369_Y	0.585	0.26
396_S	402_N	0.584	0.26
363_G	367_Y	0.583	0.26
98_L	148_L	0.582	0.26
331_R	349_M	0.581	0.26
246_R	280_L	0.580	0.26
20_P	47_A	0.579	0.26
149_R	166_D	0.579	0.26
62_V	148_L	0.579	0.26
218_L	226_P	0.578	0.26
78_Y	349_M	0.578	0.26
29_L	39_S	0.576	0.26
57_V	61_E	0.575	0.26
125_V	129_R	0.573	0.26
23_P	29_L	0.572	0.26
126_K	133_E	0.571	0.25
283_D	345_S	0.570	0.25
46_L	50_R	0.570	0.25
400_N	404_A	0.570	0.25
94_L	357_V	0.565	0.25
21_P	26_D	0.563	0.25
33_L	38_R	0.563	0.25
277_F	359_F	0.561	0.25
260_A	296_W	0.561	0.25
373_D	383_Y	0.561	0.25
220_P	359_F	0.560	0.25
74_L	273_L	0.560	0.25
71_L	269_T	0.560	0.25
344_N	367_Y	0.559	0.25
22_P	32_A	0.557	0.25
17_K	21_P	0.556	0.25
56_C	258_E	0.556	0.25
394_R	397_E	0.554	0.24
75_L	79_F	0.551	0.24
122_P	139_P	0.548	0.24
393_L	399_K	0.547	0.24
92_E	324_D	0.546	0.24
168_S	171_W	0.545	0.24
241_I	277_F	0.544	0.24
31_A	39_S	0.544	0.24
71_L	219_L	0.542	0.24
212_D	242_W	0.540	0.24
277_F	285_L	0.539	0.24
263_M	285_L	0.539	0.24
306_A	368_I	0.537	0.24
380_P	389_D	0.537	0.24
300_L	354_Y	0.537	0.24
277_F	346_A	0.537	0.24
374_A	379_L	0.537	0.24
289_D	367_Y	0.537	0.24
299_Y	346_A	0.535	0.23
165_P	299_Y	0.535	0.23
229_E	233_A	0.534	0.23
123_D	259_E	0.533	0.23
397_E	400_N	0.533	0.23
378_S	383_Y	0.532	0.23
246_R	295_F	0.530	0.23
94_L	303_I	0.530	0.23
274_R	297_L	0.530	0.23
71_L	128_L	0.529	0.23
277_F	349_M	0.529	0.23
164_I	221_R	0.527	0.23
266_R	304_S	0.527	0.23
303_I	312_S	0.525	0.23
135_L	139_P	0.525	0.23
306_A	325_F	0.524	0.23
249_S	353_D	0.523	0.23
410_S	416_Q	0.522	0.23
97_F	268_L	0.520	0.23
179_L	218_L	0.519	0.23
247_L	264_V	0.518	0.22
147_L	236_D	0.515	0.22
344_N	347_F	0.515	0.22
387_Y	392_R	0.513	0.22
290_P	324_D	0.512	0.22
19_S	22_P	0.511	0.22
128_L	131_H	0.511	0.22
70_C	98_L	0.510	0.22
242_W	357_V	0.510	0.22
291_R	296_W	0.510	0.22
384_T	391_S	0.504	0.22
94_L	110_R	0.504	0.22
380_P	391_S	0.502	0.22
376_P	387_Y	0.500	0.21
326_V	353_D	0.500	0.21

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1q1vA	1	0.1635	5.4	0.973	Contact Map
4cndA	2	0.0166	4.8	0.974	Contact Map
4x2uA	1	0.5095	4.7	0.974	Contact Map
1t3jA	2	0.1469	4.6	0.974	Contact Map
1ny9A	1	0.2109	3.5	0.975	Contact Map
4x86A	1	0.1209	3.3	0.976	Contact Map
2ekoA	1	0.1422	3.2	0.976	Contact Map
3c4rA	4	0.2867	2.9	0.977	Contact Map
1a32A	1	0.2014	2.8	0.977	Contact Map
4irlA	1	0.2512	2.8	0.977	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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