GREMLIN Database
NAM-associated - No apical meristem-associated C-terminal domain
PFAM: PF14303 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 156 (145)
Sequences: 799 (699)
Seq/√Len: 58.1
META: 0.12

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
113_K119_K4.8691.00
118_E121_K4.6211.00
74_I79_A2.8911.00
144_E153_Q2.7351.00
120_E126_K2.6671.00
9_W13_K2.6101.00
12_L18_W2.5671.00
72_R75_G2.5361.00
142_D153_Q2.4841.00
114_K118_E2.4551.00
121_K125_K2.3171.00
72_R80_K2.2831.00
146_R150_E2.1061.00
74_I82_K1.9741.00
135_S149_Y1.9491.00
89_E93_K1.9411.00
149_Y153_Q1.9401.00
116_E119_K1.8290.99
113_K116_E1.7480.99
74_I78_K1.7260.99
72_R77_K1.7200.99
145_Q153_Q1.6370.99
109_K112_R1.6090.99
93_K99_K1.5760.98
125_K128_K1.5010.98
81_E84_K1.4900.98
30_Q38_P1.4890.98
147_A150_E1.4620.97
143_D146_R1.4440.97
30_Q37_S1.4280.97
31_K37_S1.4240.97
138_L141_M1.4080.97
129_E132_K1.3990.97
35_N38_P1.3720.96
15_E18_W1.3270.96
102_D105_K1.3070.95
75_G79_A1.2640.94
30_Q33_T1.2600.94
57_D60_E1.2590.94
8_C12_L1.2540.94
147_A151_A1.2330.93
152_K155_E1.2200.93
106_E109_K1.2200.93
132_K136_M1.2150.93
37_S40_T1.2100.93
99_K103_E1.1850.92
56_N59_D1.1790.92
123_E126_K1.1740.92
128_K132_K1.1700.91
31_K39_S1.1370.90
126_K130_E1.1370.90
116_E120_E1.1220.90
85_S89_E1.1190.89
137_D140_S1.1040.89
136_M149_Y1.1040.89
77_K80_K1.0950.88
101_L104_E1.0900.88
93_K107_K1.0820.88
102_D106_E1.0730.87
98_K105_K1.0690.87
95_W98_K1.0620.87
91_L94_L1.0620.87
127_L130_E1.0600.87
32_K35_N1.0590.87
36_S39_S1.0490.86
153_Q156_I1.0430.86
150_E154_K1.0380.86
97_K102_D1.0330.85
128_K131_E1.0320.85
87_Y98_K1.0230.85
8_C76_R1.0200.85
35_N40_T1.0140.84
115_L122_L1.0130.84
92_D98_K1.0090.84
4_T13_K1.0060.84
86_S92_D1.0040.84
73_P80_K0.9940.83
103_E108_A0.9910.83
144_E150_E0.9860.83
117_L122_L0.9840.82
75_G80_K0.9820.82
21_Y24_E0.9810.82
108_A111_E0.9760.82
113_K117_L0.9730.82
97_K106_E0.9660.81
32_K43_S0.9580.81
91_L103_E0.9480.80
104_E107_K0.9470.80
60_E63_E0.9370.79
104_E109_K0.9310.79
131_E149_Y0.9250.78
130_E133_I0.8960.76
95_W99_K0.8780.75
100_E103_E0.8650.73
88_K97_K0.8620.73
95_W105_K0.8560.73
107_K111_E0.8530.72
62_S65_E0.8510.72
92_D96_A0.8490.72
38_P43_S0.8360.71
34_K42_S0.8350.71
35_N42_S0.8350.71
86_S91_L0.8320.71
31_K43_S0.8290.70
77_K140_S0.8280.70
37_S42_S0.8170.69
35_N43_S0.8110.69
30_Q34_K0.8090.68
143_D153_Q0.8030.68
78_K81_E0.8010.68
31_K38_P0.7910.67
12_L15_E0.7900.67
102_D109_K0.7800.66
89_E92_D0.7770.65
16_P19_K0.7740.65
30_Q39_S0.7710.65
85_S88_K0.7670.64
149_Y152_K0.7640.64
29_K39_S0.7600.64
140_S153_Q0.7570.63
100_E111_E0.7560.63
11_I30_Q0.7560.63
73_P79_A0.7480.62
85_S92_D0.7450.62
33_T37_S0.7440.62
34_K43_S0.7440.62
145_Q149_Y0.7430.62
126_K129_E0.7430.62
93_K97_K0.7410.62
89_E94_L0.7400.61
85_S99_K0.7390.61
93_K100_E0.7330.61
119_K123_E0.7300.60
97_K104_E0.7280.60
39_S42_S0.7260.60
92_D104_E0.7210.59
66_E71_K0.7200.59
114_K121_K0.7140.59
73_P77_K0.7140.59
39_S43_S0.7110.58
144_E154_K0.7040.58
107_K110_E0.7020.57
57_D61_E0.7000.57
95_W102_D0.7000.57
31_K34_K0.6940.57
138_L146_R0.6940.57
87_Y93_K0.6920.56
40_T43_S0.6910.56
101_L105_K0.6900.56
108_A112_R0.6880.56
34_K41_S0.6860.56
134_M141_M0.6790.55
35_N39_S0.6780.55
104_E108_A0.6700.54
29_K32_K0.6700.54
91_L109_K0.6670.54
10_N20_A0.6590.53
127_L152_K0.6550.52
92_D101_L0.6540.52
20_A115_L0.6450.51
55_D58_S0.6390.51
105_K108_A0.6380.50
34_K39_S0.6370.50
137_D149_Y0.6370.50
127_L136_M0.6330.50
79_A82_K0.6330.50
85_S93_K0.6330.50
97_K109_K0.6270.49
98_K112_R0.6240.49
106_E110_E0.6200.48
90_A97_K0.6200.48
4_T23_E0.6190.48
1_K4_T0.6180.48
129_E133_I0.6160.48
134_M148_Y0.6130.48
8_C134_M0.6100.47
18_W149_Y0.6090.47
101_L110_E0.6070.47
8_C11_I0.6060.47
87_Y91_L0.6000.46
29_K42_S0.5970.46
102_D107_K0.5960.46
8_C15_E0.5920.45
102_D108_A0.5880.45
96_A106_E0.5840.44
144_E147_A0.5780.44
23_E34_K0.5780.44
123_E137_D0.5780.44
8_C22_L0.5770.44
33_T36_S0.5770.44
33_T40_T0.5720.43
1_K122_L0.5680.43
101_L112_R0.5650.42
104_E112_R0.5640.42
98_K109_K0.5630.42
126_K152_K0.5600.42
87_Y94_L0.5580.42
88_K101_L0.5530.41
29_K139_S0.5520.41
12_L129_E0.5480.41
91_L95_W0.5300.39
141_M152_K0.5260.38
38_P42_S0.5260.38
14_D134_M0.5240.38
120_E124_L0.5220.38
97_K108_A0.5210.38
125_K132_K0.5210.38
135_S153_Q0.5190.38
151_A154_K0.5190.38
105_K112_R0.5180.37
97_K101_L0.5170.37
92_D103_E0.5150.37
32_K38_P0.5140.37
86_S93_K0.5110.37
76_R146_R0.5070.36
98_K102_D0.5050.36
56_N62_S0.5040.36
2_P7_H0.5000.36
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4djcB 1 0.0833 3 0.936 Contact Map
4yonA 1 0.5385 2.4 0.939 Contact Map
4cr2Z 1 0.3141 1.8 0.943 Contact Map
3csuA 3 0.3333 1.4 0.946 Contact Map
4nf9C 1 0.0577 1.3 0.947 Contact Map
3ul1A 1 0.1346 1.1 0.949 Contact Map
4uvqA 2 0.3077 1.1 0.95 Contact Map
3narA 1 0.3462 1.1 0.95 Contact Map
3magA 2 0.2692 1.1 0.95 Contact Map
1juqA 3 0.2821 1 0.951 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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