GREMLIN Database
AtpR - N-ATPase, AtpR subunit
PFAM: PF12966 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 85 (81)
Sequences: 4106 (3178)
Seq/√Len: 353.1
META: 0.909

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
13_L52_G3.4381.00
49_V71_F3.1021.00
56_V67_C3.0441.00
28_L38_F2.9571.00
60_G63_R2.5951.00
53_F71_F2.1351.00
16_F48_L2.0121.00
42_L46_T1.9581.00
17_F49_V1.9021.00
7_L73_L1.8241.00
22_W26_R1.8211.00
74_A78_V1.6861.00
76_L79_T1.6541.00
20_G24_T1.6331.00
78_V82_T1.6181.00
24_T41_S1.5991.00
11_L74_A1.5211.00
57_A64_L1.5181.00
20_G41_S1.4811.00
21_L25_V1.4171.00
19_G23_W1.3761.00
6_A66_A1.3581.00
59_G63_R1.3111.00
13_L49_V1.3041.00
9_A52_G1.2471.00
32_K36_L1.2331.00
58_G63_R1.2291.00
46_T50_L1.2251.00
49_V53_F1.1971.00
3_L66_A1.1751.00
31_S37_W1.1601.00
14_G74_A1.1141.00
6_A56_V1.1011.00
6_A67_C1.0961.00
51_A55_L1.0861.00
7_L66_A1.0711.00
68_L72_L1.0371.00
16_F20_G1.0311.00
41_S45_R1.0181.00
78_V81_L0.9921.00
36_L40_G0.9801.00
14_G18_F0.9761.00
37_W41_S0.9641.00
29_V37_W0.9611.00
70_G74_A0.9561.00
53_F67_C0.9511.00
28_L37_W0.9371.00
6_A59_G0.9341.00
31_S34_P0.9321.00
7_L11_L0.9301.00
76_L80_R0.9071.00
20_G23_W0.9061.00
16_F49_V0.8921.00
79_T82_T0.8831.00
11_L15_A0.8661.00
15_A19_G0.8541.00
61_W65_L0.8501.00
57_A67_C0.8501.00
57_A63_R0.8441.00
7_L70_G0.8321.00
50_L71_F0.8281.00
57_A60_G0.8091.00
77_I80_R0.7951.00
77_I81_L0.7891.00
19_G22_W0.7691.00
59_G64_L0.7601.00
9_A56_V0.7491.00
23_W26_R0.7441.00
72_L76_L0.7381.00
80_R83_R0.7351.00
4_A65_L0.7351.00
54_Y58_G0.7110.99
40_G44_L0.7080.99
46_T71_F0.7040.99
15_A74_A0.6990.99
38_F42_L0.6950.99
4_A8_L0.6790.99
47_A51_A0.6720.99
7_L12_L0.6670.99
68_L79_T0.6670.99
13_L24_T0.6660.99
50_L54_Y0.6610.99
53_F64_L0.6510.99
28_L31_S0.6480.99
24_T27_R0.6460.99
48_L55_L0.6400.99
27_R36_L0.6390.99
33_R36_L0.6390.99
56_V63_R0.6390.99
55_L58_G0.6380.99
48_L52_G0.6370.99
47_A62_E0.6350.99
35_A38_F0.6310.99
30_S80_R0.6270.98
16_F26_R0.6250.98
24_T45_R0.6250.98
35_A39_L0.6240.98
28_L41_S0.6110.98
7_L69_L0.6100.98
65_L69_L0.6080.98
14_G70_G0.6070.98
12_L15_A0.6010.98
31_S39_L0.6010.98
17_F20_G0.5970.98
25_V29_V0.5910.98
27_R30_S0.5880.98
75_R80_R0.5870.98
21_L24_T0.5810.98
58_G62_E0.5810.98
17_F46_T0.5670.97
15_A81_L0.5600.97
5_L83_R0.5510.97
11_L32_K0.5420.96
13_L34_P0.5280.96
18_F72_L0.5210.95
27_R37_W0.5200.95
66_A75_R0.5150.95
20_G39_L0.5120.95
51_A58_G0.5120.95
38_F46_T0.5050.95
6_A19_G0.5040.94
8_L11_L0.5000.94
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4rngA 2 0.9647 1.6 0.896 Contact Map
4czbA 2 0.8588 1.5 0.898 Contact Map
2x2zA 1 0 1.4 0.9 Contact Map
3j1zP 8 0.7529 1.3 0.901 Contact Map
4zw9A 1 0.9765 1.2 0.902 Contact Map
2jwaA 2 0.4 1.2 0.904 Contact Map
1pw4A 1 1 1 0.909 Contact Map
2cfqA 1 0.9882 0.9 0.91 Contact Map
1scfA 4 0 0.9 0.911 Contact Map
4pypA 1 1 0.9 0.911 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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