GREMLIN Database
Staygreen - Staygreen protein
PFAM: PF12638 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 147 (145)
Sequences: 784 (615)
Seq/√Len: 51.0
META: 0.703

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
106_R120_D6.5791.00
74_Y129_H5.4191.00
60_A73_V3.9101.00
91_Y95_R3.9091.00
124_I144_P2.9251.00
97_E100_L2.8601.00
2_L103_E2.7861.00
121_N145_A2.7791.00
71_L144_P2.6331.00
39_L108_G2.4801.00
28_L39_L2.3131.00
45_Y59_L2.1441.00
130_S135_Y2.0671.00
62_W122_A1.9170.99
12_L40_T1.9000.99
113_F144_P1.8360.99
73_V126_V1.8350.99
46_D49_Q1.7570.99
11_F41_I1.7570.99
60_A71_L1.6880.98
91_Y135_Y1.6400.98
84_F89_W1.6040.98
106_R113_F1.5950.98
112_L116_H1.5800.98
78_S87_A1.5760.98
8_H36_D1.5580.97
25_R44_E1.4660.96
81_G85_G1.4660.96
37_L100_L1.4600.96
28_L37_L1.4580.96
123_P143_T1.4080.95
112_L119_L1.4020.95
72_H127_H1.3690.95
25_R45_Y1.3670.95
94_F98_L1.3460.94
32_D56_D1.3310.94
29_T55_R1.3230.94
25_R61_E1.3190.93
51_S81_G1.3120.93
95_R139_E1.3030.93
33_I63_K1.2850.92
64_K69_L1.2790.92
91_Y130_S1.2600.92
97_E113_F1.2570.92
32_D37_L1.2540.92
11_F43_P1.2330.91
16_T20_P1.2280.91
59_L107_Y1.2220.90
113_F120_D1.2200.90
89_W92_A1.1950.89
92_A96_R1.1490.88
91_Y94_F1.1370.87
101_V105_I1.1280.87
12_L48_K1.1240.86
64_K68_G1.1070.85
106_R144_P1.0840.84
65_D68_G1.0600.83
15_V43_P1.0600.83
32_D100_L1.0490.82
89_W101_V1.0330.81
40_T46_D1.0220.81
86_T89_W1.0200.80
94_F102_L1.0000.79
29_T32_D0.9990.79
51_S82_F0.9960.79
15_V20_P0.9940.79
54_M77_V0.9770.77
25_R60_A0.9740.77
78_S81_G0.9730.77
31_S35_G0.9680.77
60_A144_P0.9630.76
62_W124_I0.9550.76
76_H80_G0.9450.75
63_K69_L0.9430.75
102_L123_P0.9310.74
30_H56_D0.9240.73
10_T46_D0.9170.73
138_V144_P0.9150.73
32_D58_V0.9080.72
29_T57_E0.9050.72
73_V139_E0.8950.71
32_D35_G0.8930.71
76_H82_F0.8910.71
75_C126_V0.8830.70
35_G81_G0.8800.70
120_D144_P0.8790.70
83_V86_T0.8780.69
111_A114_E0.8690.69
12_L46_D0.8680.69
80_G87_A0.8660.68
31_S38_F0.8610.68
7_L39_L0.8560.68
17_P111_A0.8530.67
41_I109_D0.8510.67
35_G57_E0.8470.67
20_P112_L0.8460.67
121_N137_K0.8360.66
30_H34_T0.8050.63
31_S108_G0.8040.63
75_C78_S0.8000.62
80_G83_V0.7960.62
88_K135_Y0.7830.61
15_V110_R0.7830.61
98_L128_F0.7800.60
124_I143_T0.7790.60
63_K135_Y0.7770.60
7_L108_G0.7680.59
45_Y91_Y0.7630.59
140_N143_T0.7530.58
41_I131_S0.7520.57
78_S91_Y0.7510.57
40_T49_Q0.7460.57
17_P123_P0.7440.57
76_H81_G0.7440.57
114_E135_Y0.7420.56
21_I69_L0.7380.56
24_R27_T0.7350.56
69_L122_A0.7240.55
54_M82_F0.7230.55
11_F19_G0.7170.54
53_L76_H0.7170.54
32_D55_R0.7160.54
73_V97_E0.7160.54
129_H136_N0.7150.54
125_W140_N0.7140.54
10_T17_P0.7020.52
75_C125_W0.6990.52
111_A126_V0.6980.52
22_L41_I0.6960.52
3_N70_S0.6950.52
56_D93_I0.6940.52
121_N143_T0.6940.52
68_G123_P0.6930.51
43_P121_N0.6910.51
74_Y136_N0.6900.51
35_G55_R0.6830.50
20_P144_P0.6800.50
3_N92_A0.6720.49
96_R141_W0.6710.49
10_T49_Q0.6700.49
75_C98_L0.6680.49
29_T56_D0.6680.49
30_H58_V0.6650.49
107_Y110_R0.6640.48
54_M81_G0.6600.48
103_E106_R0.6570.48
86_T121_N0.6560.48
94_F109_D0.6550.47
16_T143_T0.6410.46
63_K74_Y0.6330.45
111_A144_P0.6330.45
25_R47_R0.6320.45
53_L121_N0.6310.45
85_G89_W0.6220.44
102_L146_D0.6220.44
22_L82_F0.6210.44
32_D57_E0.6210.44
101_V104_A0.6210.44
31_S57_E0.6180.44
37_L56_D0.6140.43
38_F147_Y0.6090.43
87_A131_S0.6080.43
6_K36_D0.6080.43
12_L16_T0.6050.42
35_G56_D0.6040.42
45_Y51_S0.6020.42
11_F42_G0.5980.42
23_P43_P0.5960.41
105_I116_H0.5950.41
11_F17_P0.5940.41
55_R59_L0.5920.41
125_W138_V0.5910.41
90_R93_I0.5910.41
107_Y111_A0.5880.41
67_G118_E0.5820.40
8_H144_P0.5820.40
80_G85_G0.5790.40
27_T55_R0.5760.39
22_L64_K0.5760.39
46_D78_S0.5760.39
33_I86_T0.5710.39
84_F141_W0.5710.39
18_T95_R0.5710.39
33_I89_W0.5680.39
78_S89_W0.5630.38
37_L93_I0.5590.38
66_E119_L0.5560.38
133_P145_A0.5530.37
36_D58_V0.5500.37
120_D145_A0.5470.37
35_G88_K0.5470.37
53_L85_G0.5470.37
53_L89_W0.5430.36
64_K112_L0.5420.36
60_A139_E0.5380.36
81_G84_F0.5360.36
19_G111_A0.5350.35
40_T92_A0.5310.35
88_K112_L0.5310.35
30_H55_R0.5300.35
77_V98_L0.5290.35
37_L107_Y0.5240.34
49_Q52_G0.5230.34
5_E18_T0.5220.34
33_I67_G0.5200.34
75_C124_I0.5190.34
29_T54_M0.5170.34
13_P118_E0.5130.33
30_H57_E0.5120.33
53_L81_G0.5110.33
10_T13_P0.5100.33
44_E47_R0.5090.33
38_F93_I0.5060.33
41_I44_E0.5020.32
17_P20_P0.5010.32
31_S39_L0.5000.32
99_P114_E0.5000.32
51_S77_V0.5000.32
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3nttA 6 0.9592 10.9 0.952 Contact Map
2g8gA 7 0.966 9.9 0.953 Contact Map
4dpvZ 8 0.9728 8.2 0.955 Contact Map
1s58A 7 0.9864 7.5 0.955 Contact Map
3owrA 1 0.3061 7.1 0.956 Contact Map
1wz3A 2 0.483 6.5 0.957 Contact Map
3w1sC 1 0.4286 6.3 0.957 Contact Map
4hczA 1 0.3401 6.2 0.957 Contact Map
3ng9A 7 0.9456 5.7 0.958 Contact Map
2r2qA 1 0.483 5.7 0.958 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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