Phage_TAC_12 - PFAM28P - GREMLIN Contacts

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Phage_TAC_12 - Phage tail assembly chaperone protein, TAC

PFAM:	PF12363	Sequences: ELTINGKEYELKFGFGFIRELDKKYSVEVEGVKFGMGLTYLVAGLLDGDPEALVDVIYAATATEKPRPSEEDIEEYIEELDEEEDIEKLFDEVLEELKKSNFTKKKVKKLQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_10
Length:	111 (110)
Sequences:	517 (433)
Seq/√Len:	41.3
META:	0.576

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
19_R	74_E	3.628	1.00
88_K	92_E	3.601	1.00
11_L	57_I	3.374	1.00
78_E	102_F	3.259	1.00
87_E	105_K	3.229	1.00
28_E	33_K	2.852	1.00
26_S	33_K	2.560	1.00
1_E	8_E	2.450	1.00
22_D	49_D	2.421	1.00
5_N	72_D	2.383	1.00
24_K	55_D	2.311	1.00
61_T	68_P	2.253	1.00
21_L	41_L	1.996	0.99
69_S	72_D	1.863	0.98
41_L	56_V	1.787	0.98
3_T	8_E	1.765	0.98
15_F	74_E	1.753	0.98
22_D	34_F	1.713	0.97
7_K	66_P	1.713	0.97
76_Y	89_L	1.673	0.97
22_D	51_E	1.624	0.96
20_E	23_K	1.611	0.96
53_L	90_F	1.610	0.96
44_G	49_D	1.583	0.96
22_D	38_L	1.514	0.94
45_L	56_V	1.483	0.94
3_T	6_G	1.469	0.93
58_Y	70_E	1.416	0.92
93_V	101_N	1.405	0.92
56_V	93_V	1.362	0.90
95_E	99_K	1.351	0.90
39_T	106_K	1.326	0.89
13_F	96_E	1.326	0.89
11_L	60_A	1.314	0.89
44_G	52_A	1.243	0.86
16_G	20_E	1.237	0.86
11_L	61_T	1.221	0.85
21_L	24_K	1.198	0.84
81_D	85_D	1.171	0.82
86_I	110_L	1.164	0.82
22_D	35_G	1.155	0.81
2_L	11_L	1.155	0.81
21_L	59_A	1.145	0.81
54_V	74_E	1.138	0.80
70_E	74_E	1.123	0.79
85_D	104_K	1.091	0.77
25_Y	41_L	1.082	0.77
61_T	73_I	1.070	0.76
6_G	75_E	1.068	0.76
65_K	68_P	1.054	0.75
12_K	82_E	1.029	0.73
15_F	102_F	1.029	0.73
13_F	60_A	1.028	0.73
23_K	61_T	1.021	0.73
29_V	32_V	1.011	0.72
96_E	99_K	1.003	0.71
80_L	85_D	0.989	0.70
97_L	103_T	0.988	0.70
106_K	109_K	0.987	0.70
30_E	109_K	0.981	0.69
2_L	46_L	0.910	0.64
72_D	75_E	0.899	0.63
71_E	75_E	0.869	0.60
52_A	55_D	0.866	0.60
30_E	71_E	0.865	0.60
58_Y	67_R	0.860	0.59
100_S	104_K	0.856	0.59
43_A	47_D	0.852	0.58
17_F	60_A	0.843	0.58
38_L	45_L	0.837	0.57
93_V	96_E	0.818	0.55
94_L	98_K	0.806	0.54
100_S	103_T	0.804	0.54
10_E	64_E	0.799	0.54
21_L	25_Y	0.794	0.53
89_L	100_S	0.794	0.53
72_D	76_Y	0.793	0.53
54_V	70_E	0.760	0.50
77_I	88_K	0.753	0.49
10_E	65_K	0.744	0.48
48_G	105_K	0.742	0.48
1_E	10_E	0.741	0.48
12_K	63_T	0.739	0.48
11_L	59_A	0.738	0.48
58_Y	73_I	0.729	0.47
57_I	73_I	0.728	0.47
19_R	77_I	0.726	0.47
75_E	78_E	0.722	0.46
1_E	69_S	0.713	0.46
103_T	107_V	0.711	0.45
92_E	95_E	0.698	0.44
14_G	78_E	0.694	0.44
35_G	96_E	0.691	0.44
46_L	97_L	0.688	0.43
49_D	106_K	0.680	0.43
4_I	50_P	0.672	0.42
41_L	44_G	0.672	0.42
15_F	51_E	0.669	0.42
14_G	17_F	0.668	0.41
40_Y	47_D	0.667	0.41
12_K	102_F	0.656	0.40
11_L	73_I	0.649	0.40
22_D	87_E	0.649	0.40
4_I	17_F	0.648	0.40
41_L	104_K	0.647	0.40
16_G	19_R	0.637	0.39
80_L	89_L	0.629	0.38
9_Y	64_E	0.621	0.37
37_G	43_A	0.614	0.37
86_I	106_K	0.612	0.37
37_G	41_L	0.610	0.36
22_D	60_A	0.608	0.36
107_V	110_L	0.606	0.36
40_Y	54_V	0.606	0.36
48_G	92_E	0.602	0.36
39_T	110_L	0.601	0.36
49_D	98_K	0.600	0.35
45_L	71_E	0.598	0.35
3_T	70_E	0.596	0.35
97_L	107_V	0.596	0.35
77_I	84_E	0.594	0.35
2_L	89_L	0.591	0.35
69_S	91_D	0.590	0.35
16_G	75_E	0.588	0.34
39_T	47_D	0.587	0.34
72_D	108_K	0.583	0.34
7_K	108_K	0.580	0.34
27_V	99_K	0.577	0.34
26_S	30_E	0.574	0.33
6_G	33_K	0.574	0.33
16_G	74_E	0.573	0.33
59_A	73_I	0.570	0.33
19_R	50_P	0.567	0.33
10_E	63_T	0.566	0.33
21_L	34_F	0.566	0.33
9_Y	63_T	0.564	0.32
4_I	9_Y	0.564	0.32
13_F	93_V	0.563	0.32
38_L	77_I	0.563	0.32
56_V	95_E	0.561	0.32
84_E	101_N	0.559	0.32
11_L	68_P	0.557	0.32
10_E	91_D	0.551	0.31
97_L	108_K	0.547	0.31
35_G	86_I	0.544	0.31
48_G	87_E	0.543	0.31
16_G	63_T	0.540	0.31
37_G	42_V	0.539	0.30
67_R	70_E	0.539	0.30
20_E	60_A	0.535	0.30
25_Y	55_D	0.534	0.30
5_N	60_A	0.530	0.30
23_K	33_K	0.521	0.29
85_D	100_S	0.518	0.29
82_E	109_K	0.518	0.29
60_A	93_V	0.516	0.29
28_E	71_E	0.516	0.29
29_V	33_K	0.515	0.29
24_K	83_E	0.510	0.28
34_F	49_D	0.510	0.28
50_P	81_D	0.505	0.28
83_E	92_E	0.502	0.28
25_Y	73_I	0.502	0.28
16_G	62_A	0.501	0.28
50_P	54_V	0.500	0.27

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3hnwA	2	0.955	11.6	0.907	Contact Map
2qguA	1	0.5946	11.2	0.907	Contact Map
1t3uA	4	0.7838	9.2	0.911	Contact Map
1no1A	1	0.6036	9	0.911	Contact Map
2mmvA	2	0.6486	8.9	0.911	Contact Map
1fc3A	3	0.7658	8.8	0.912	Contact Map
3b09A	2	0.5495	8.8	0.912	Contact Map
3o7iA	1	0.5766	8.5	0.912	Contact Map
4jerA	1	0.6486	8.4	0.912	Contact Map
4o6uA	1	0.6036	7.9	0.913	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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