GREMLIN Database
YflT - Heat induced stress protein YflT
PFAM: PF11181 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 101 (101)
Sequences: 2037 (1605)
Seq/√Len: 159.7
META: 0.617

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
92_E97_K2.7071.00
5_D97_K2.6341.00
90_E94_D2.4641.00
18_K24_E2.4071.00
10_A100_V2.3481.00
3_V92_E2.3421.00
23_S26_D2.2101.00
64_L67_G2.0411.00
13_A100_V2.0111.00
6_N9_E1.9901.00
83_E87_E1.9881.00
70_D74_G1.9031.00
59_G65_F1.7941.00
92_E95_A1.7841.00
47_N50_G1.6341.00
56_G59_G1.6081.00
55_G60_A1.5971.00
27_I100_V1.5841.00
13_A16_E1.5511.00
71_E74_G1.4971.00
50_G53_E1.4881.00
55_G62_A1.4731.00
4_F13_A1.4591.00
60_A64_L1.4331.00
80_G86_A1.4011.00
16_E20_A1.3851.00
76_L81_I1.3751.00
91_E95_A1.3581.00
15_E19_A1.3361.00
93_L99_L1.3331.00
30_V93_L1.3301.00
12_R16_E1.3261.00
77_V83_E1.3181.00
82_P85_E1.2941.00
5_D9_E1.2901.00
10_A98_I1.2801.00
76_L86_A1.2591.00
89_Y99_L1.2591.00
37_T41_A1.2581.00
62_A66_T1.2481.00
22_F26_D1.2391.00
63_N66_T1.2201.00
91_E94_D1.1891.00
63_N67_G1.1611.00
76_L80_G1.1531.00
14_I27_I1.1361.00
2_G13_A1.1321.00
51_G54_A1.0961.00
3_V99_L1.0520.99
46_V50_G1.0450.99
57_L60_A1.0300.99
69_G72_L1.0070.99
58_W64_L1.0000.99
4_F100_V0.9890.99
16_E19_A0.9810.99
7_E11_E0.9760.99
59_G62_A0.9750.99
57_L61_I0.9700.99
15_E18_K0.9490.99
10_A27_I0.9310.98
55_G63_N0.9270.98
31_A98_I0.9200.98
88_R92_E0.9150.98
56_G60_A0.9150.98
60_A63_N0.9130.98
48_V51_G0.9120.98
47_N51_G0.9120.98
69_G73_R0.9050.98
88_R91_E0.9030.98
22_F79_L0.8950.98
76_L99_L0.8940.98
58_W65_F0.8920.98
12_R15_E0.8860.98
41_A48_V0.8830.98
61_I66_T0.8820.98
78_G86_A0.8720.98
59_G64_L0.8540.97
11_E18_K0.8440.97
27_I98_I0.8420.97
4_F22_F0.8350.97
84_E88_R0.8230.96
3_V89_Y0.8180.96
85_E88_R0.8080.96
50_G54_A0.8020.96
81_I85_E0.7970.96
14_I100_V0.7890.96
19_A29_V0.7820.95
76_L82_P0.7750.95
12_R19_A0.7710.95
32_K94_D0.7690.95
55_G69_G0.7640.95
77_V86_A0.7580.94
28_S88_R0.7570.94
20_A101_I0.7540.94
61_I64_L0.7510.94
11_E15_E0.7450.94
59_G63_N0.7440.94
49_E52_A0.7400.94
36_R42_E0.7240.93
93_L96_G0.7170.93
55_G75_A0.7090.92
61_I72_L0.7070.92
9_E12_R0.7060.92
11_E40_L0.6970.92
35_D40_L0.6930.91
79_L85_E0.6900.91
18_K78_G0.6670.90
60_A66_T0.6660.90
73_R90_E0.6560.89
15_E44_T0.6480.88
71_E75_A0.6450.88
14_I31_A0.6440.88
68_A71_E0.6400.88
82_P86_A0.6300.87
60_A65_F0.6280.87
29_V37_T0.6270.87
57_L64_L0.6250.87
20_A88_R0.6240.86
40_L98_I0.6080.85
57_L62_A0.6070.85
56_G67_G0.6030.85
62_A67_G0.5970.84
76_L87_E0.5960.84
4_F17_L0.5920.83
35_D39_R0.5830.83
45_D49_E0.5830.83
63_N75_A0.5810.82
8_E12_R0.5770.82
50_G64_L0.5730.81
23_S52_A0.5670.81
69_G74_G0.5630.80
30_V49_E0.5630.80
13_A28_S0.5600.80
28_S56_G0.5590.80
44_T49_E0.5520.79
48_V52_A0.5420.78
7_E29_V0.5390.77
40_L43_E0.5380.77
52_A74_G0.5290.76
86_A90_E0.5290.76
27_I34_K0.5260.76
16_E36_R0.5250.76
56_G72_L0.5240.75
14_I24_E0.5150.74
68_A74_G0.5120.74
59_G67_G0.5100.73
38_E41_A0.5090.73
43_E51_G0.5080.73
58_W66_T0.5060.73
89_Y96_G0.5060.73
79_L82_P0.5000.72
57_L67_G0.5000.72
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1x60A 1 0.5644 42.2 0.828 Contact Map
1utaA 1 0.5842 36.4 0.834 Contact Map
3lfuA 1 0.9901 17.1 0.858 Contact Map
3do6A 3 0.3366 16.6 0.859 Contact Map
4c2uA 1 0.9901 14.5 0.863 Contact Map
4pnhA 4 0.8119 13.1 0.865 Contact Map
2lfvA 1 0.3861 13.1 0.865 Contact Map
1tdjA 2 0.802 12.9 0.866 Contact Map
3ju3A 4 0.9307 12.2 0.867 Contact Map
2fprA 2 0.9406 12.1 0.868 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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