GREMLIN Database
PhageMin_Tail - Phage-related minor tail protein
PFAM: PF10145 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 198 (192)
Sequences: 24868 (20671)
Seq/√Len: 1491.8
META: 0.864

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
40_E44_K3.0951.00
168_K176_D2.9031.00
85_A118_A2.6651.00
84_A88_N2.5261.00
81_V115_E2.2401.00
3_A6_E2.2161.00
77_R81_V2.1831.00
77_R115_E2.1171.00
81_V118_A2.1011.00
6_E10_T2.0661.00
74_D77_R2.0621.00
23_Y27_S2.0321.00
169_G172_D2.0091.00
162_D166_K1.9311.00
56_E94_E1.9061.00
31_S34_E1.9061.00
16_T20_E1.8811.00
152_A155_K1.8181.00
99_A121_L1.8151.00
107_A117_T1.7811.00
70_L74_D1.7391.00
84_A87_N1.7361.00
140_T144_R1.7281.00
92_T95_D1.6961.00
41_A76_A1.6861.00
45_L57_A1.6531.00
12_G47_A1.6461.00
102_R133_E1.6191.00
113_S116_E1.6141.00
56_E59_D1.6041.00
61_L75_A1.6021.00
86_A93_V1.6001.00
22_L35_A1.6001.00
89_G122_A1.5861.00
24_E27_S1.5851.00
17_E20_E1.5821.00
30_L38_A1.5651.00
154_K159_S1.5641.00
60_A97_A1.5601.00
61_L79_A1.5591.00
168_K172_D1.5241.00
52_D56_E1.5031.00
18_L43_L1.4991.00
20_E23_Y1.4691.00
85_A122_A1.4631.00
185_T188_Q1.4621.00
35_A39_L1.4571.00
65_L75_A1.4401.00
106_V139_R1.4221.00
51_A57_A1.4101.00
63_S128_G1.3991.00
91_T125_A1.3951.00
59_D90_A1.3911.00
139_R143_T1.3841.00
171_A175_E1.3751.00
175_E179_E1.3641.00
150_A154_K1.3641.00
172_D176_D1.3551.00
32_A35_A1.3471.00
70_L78_V1.3341.00
4_A22_L1.3291.00
102_R132_S1.3271.00
22_L39_L1.2871.00
15_A19_A1.2731.00
140_T143_T1.2671.00
26_A35_A1.2601.00
41_A79_A1.2601.00
83_A87_N1.2571.00
44_K47_A1.2401.00
63_S90_A1.2361.00
180_A183_G1.2321.00
175_E180_A1.2291.00
10_T40_E1.2201.00
43_L47_A1.2131.00
24_E55_A1.2041.00
191_A195_T1.1931.00
45_L93_V1.1841.00
98_E101_K1.1801.00
71_S74_D1.1771.00
33_E37_A1.1561.00
25_L42_A1.1461.00
13_F17_E1.1341.00
75_A79_A1.1321.00
146_T149_A1.1271.00
65_L70_L1.1221.00
147_K151_K1.1171.00
161_K166_K1.1121.00
45_L79_A1.1081.00
152_A156_L1.1071.00
103_V117_T1.1061.00
67_A104_G1.1051.00
25_L38_A1.0981.00
91_T96_L1.0911.00
159_S162_D1.0891.00
55_A59_D1.0791.00
13_F43_L1.0781.00
20_E24_E1.0771.00
107_A112_V1.0721.00
94_E98_E1.0671.00
106_V109_A1.0411.00
123_A127_A1.0381.00
5_K9_A1.0331.00
98_E132_S1.0281.00
14_S17_E1.0151.00
13_F47_A1.0151.00
35_A38_A1.0061.00
42_A61_L0.9981.00
149_A153_L0.9981.00
60_A64_A0.9911.00
3_A36_L0.9811.00
112_V142_L0.9791.00
172_D175_E0.9781.00
41_A44_K0.9751.00
123_A126_N0.9751.00
168_K173_I0.9651.00
37_A40_E0.9611.00
161_K165_G0.9561.00
3_A7_L0.9541.00
186_D189_R0.9541.00
150_A155_K0.9531.00
112_V116_E0.9511.00
176_D179_E0.9481.00
175_E178_A0.9431.00
176_D180_A0.9421.00
124_L134_A0.9411.00
165_G168_K0.9411.00
148_E152_A0.9361.00
130_K133_E0.9261.00
76_A80_D0.9251.00
18_L21_A0.9201.00
149_A152_A0.9151.00
20_E55_A0.9101.00
34_E37_A0.9021.00
21_A54_L0.9021.00
119_A123_A0.8971.00
25_L58_A0.8961.00
100_L118_A0.8871.00
150_A159_S0.8841.00
37_A41_A0.8841.00
120_A138_L0.8831.00
178_A182_G0.8801.00
7_L43_L0.8791.00
116_E171_A0.8781.00
78_V114_L0.8711.00
188_Q191_A0.8701.00
181_L193_L0.8651.00
28_A90_A0.8591.00
28_A62_T0.8541.00
149_A156_L0.8511.00
153_L156_L0.8501.00
54_L61_L0.8491.00
52_D55_A0.8441.00
32_A36_L0.8431.00
11_T43_L0.8431.00
91_T131_G0.8421.00
63_S130_K0.8381.00
81_V114_L0.8381.00
102_R139_R0.8311.00
146_T150_A0.8301.00
118_A123_A0.8211.00
182_G187_A0.8181.00
110_A142_L0.8151.00
136_T139_R0.8041.00
7_L18_L0.8001.00
6_E9_A0.7991.00
101_K133_E0.7971.00
54_L57_A0.7921.00
171_A180_A0.7861.00
147_K150_A0.7821.00
3_A22_L0.7801.00
151_K155_K0.7761.00
184_L192_A0.7761.00
117_T121_L0.7751.00
181_L184_L0.7731.00
133_E137_A0.7691.00
59_D63_S0.7671.00
5_K10_T0.7641.00
69_G108_A0.7631.00
75_A82_L0.7551.00
161_K187_A0.7531.00
160_V163_A0.7511.00
161_K164_A0.7501.00
121_L135_G0.7491.00
44_K76_A0.7481.00
147_K152_A0.7481.00
70_L73_D0.7411.00
3_A40_E0.7391.00
64_A82_L0.7341.00
129_I137_A0.7311.00
72_A75_A0.7241.00
98_E102_R0.7231.00
162_D165_G0.7141.00
64_A78_V0.7071.00
95_D125_A0.7051.00
21_A43_L0.7051.00
148_E151_K0.7041.00
65_L71_S0.7001.00
66_N71_S0.6981.00
81_V84_A0.6961.00
136_T140_T0.6931.00
54_L58_A0.6921.00
95_D130_K0.6901.00
117_T120_A0.6901.00
100_L104_G0.6901.00
153_L160_V0.6851.00
62_T90_A0.6751.00
114_L118_A0.6741.00
165_G169_G0.6661.00
5_K8_G0.6631.00
81_V85_A0.6621.00
51_A56_E0.6611.00
41_A45_L0.6611.00
163_A166_K0.6601.00
132_S136_T0.6581.00
13_F46_A0.6561.00
57_A61_L0.6511.00
13_F18_L0.6501.00
177_L181_L0.6481.00
52_D57_A0.6451.00
121_L134_A0.6441.00
86_A96_L0.6441.00
158_I176_D0.6421.00
38_A75_A0.6291.00
19_A23_Y0.6241.00
68_F117_T0.6221.00
95_D131_G0.6201.00
24_E59_D0.6201.00
55_A64_A0.6141.00
30_L34_E0.6141.00
106_V110_A0.6121.00
69_G74_D0.6101.00
36_L40_E0.6091.00
108_A113_S0.6091.00
153_L158_I0.6081.00
103_V107_A0.6021.00
68_F104_G0.6021.00
120_A124_L0.5991.00
25_L39_L0.5971.00
99_A135_G0.5931.00
64_A114_L0.5901.00
102_R135_G0.5901.00
70_L114_L0.5901.00
11_T18_L0.5891.00
179_E182_G0.5881.00
21_A39_L0.5801.00
165_G173_I0.5781.00
169_G173_I0.5761.00
120_A123_A0.5761.00
131_G135_G0.5761.00
190_A194_A0.5751.00
138_L142_L0.5741.00
4_A18_L0.5731.00
120_A170_L0.5691.00
42_A58_A0.5661.00
18_L22_L0.5651.00
21_A58_A0.5611.00
122_A126_N0.5561.00
164_A168_K0.5541.00
65_L72_A0.5541.00
160_V164_A0.5541.00
113_S117_T0.5521.00
76_A85_A0.5491.00
160_V167_F0.5491.00
76_A81_V0.5481.00
41_A75_A0.5481.00
26_A32_A0.5471.00
192_A195_T0.5471.00
150_A153_L0.5461.00
107_A142_L0.5431.00
151_K154_K0.5421.00
134_A137_A0.5401.00
163_A170_L0.5371.00
65_L78_V0.5371.00
184_L187_A0.5371.00
7_L11_T0.5351.00
105_P109_A0.5351.00
133_E136_T0.5331.00
23_Y86_A0.5281.00
137_A141_I0.5261.00
91_T95_D0.5241.00
46_A54_L0.5191.00
56_E60_A0.5181.00
33_E38_A0.5181.00
129_I133_E0.5111.00
181_L189_R0.5101.00
131_G134_A0.5071.00
171_A176_D0.5001.00
135_G141_I0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2ch7A 2 0.8737 42.8 0.881 Contact Map
1vw1A 5 0.9444 28.6 0.892 Contact Map
4f7gB 1 0.6313 17.8 0.902 Contact Map
3zx6A 2 0.8687 14.5 0.906 Contact Map
1qu7A 2 0.6111 13.8 0.907 Contact Map
3tntA 2 0.303 13.6 0.907 Contact Map
3gwkC 2 0.4495 13 0.908 Contact Map
3favA 1 0.4545 10 0.912 Contact Map
3g67A 2 0.9192 9.6 0.913 Contact Map
3zbhA 2 0.4848 9 0.914 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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