GREMLIN Database
Phage_TAC_7 - Phage tail assembly chaperone proteins, E, or 41 or 14
PFAM: PF10109 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 82 (77)
Sequences: 4326 (3499)
Seq/√Len: 398.8
META: 0.72

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
22_E67_D3.0941.00
21_R27_D2.7441.00
24_T65_E2.6451.00
9_T14_T2.6001.00
29_R64_E2.4181.00
26_G64_E2.2031.00
59_P62_E2.1341.00
25_A71_L2.1341.00
3_T17_E2.0031.00
30_G54_R1.9901.00
6_K67_D1.8741.00
2_I74_L1.7081.00
20_L56_T1.6701.00
2_I77_A1.6071.00
10_R62_E1.5781.00
6_K22_E1.5681.00
24_T27_D1.5581.00
50_A60_P1.4321.00
26_G65_E1.4281.00
23_P55_L1.4241.00
58_L62_E1.3921.00
18_L58_L1.3301.00
67_D70_D1.3301.00
5_K73_A1.2871.00
52_L74_L1.2641.00
58_L63_I1.2421.00
49_I64_E1.2411.00
20_L74_L1.2081.00
52_L78_V1.1721.00
28_L68_P1.1651.00
3_T16_T1.1581.00
2_I73_A1.1571.00
18_L56_T1.1271.00
22_E69_A1.0991.00
31_A51_L1.0781.00
49_I63_I1.0731.00
18_L74_L1.0271.00
60_P64_E1.0061.00
71_L75_Q1.0001.00
66_L74_L0.9991.00
25_A49_I0.9941.00
76_E79_A0.9811.00
7_P14_T0.9751.00
27_D54_R0.9691.00
74_L77_A0.9621.00
48_E75_Q0.9531.00
29_R49_I0.9511.00
15_I62_E0.9391.00
9_T12_G0.9031.00
21_R57_G0.8691.00
52_L63_I0.8581.00
53_A60_P0.8161.00
7_P16_T0.8121.00
35_D38_G0.8061.00
11_G62_E0.8011.00
32_G47_A0.7971.00
26_G30_G0.7911.00
10_R15_I0.7881.00
39_G42_D0.7871.00
4_L70_D0.7791.00
53_A63_I0.7761.00
49_I71_L0.7731.00
5_K70_D0.7731.00
31_A54_R0.7721.00
5_K69_A0.7611.00
34_A37_G0.7471.00
2_I20_L0.7471.00
24_T67_D0.7451.00
10_R13_E0.7431.00
66_L70_D0.7381.00
26_G29_R0.7231.00
8_I62_E0.7221.00
35_D39_G0.7121.00
6_K69_A0.7091.00
4_L18_L0.7031.00
48_E71_L0.6971.00
25_A68_P0.6921.00
27_D55_L0.6921.00
29_R32_G0.6830.99
77_A80_G0.6690.99
72_A76_E0.6600.99
8_I65_E0.6570.99
34_A39_G0.6550.99
48_E52_L0.6500.99
56_T63_I0.6460.99
13_E16_T0.6450.99
70_D73_A0.6390.99
73_A77_A0.6340.99
19_T57_G0.6260.99
34_A38_G0.6220.99
13_E58_L0.6150.99
33_L38_G0.6130.99
2_I5_K0.6060.99
21_R55_L0.6050.99
15_I58_L0.6030.99
50_A54_R0.5860.98
8_I11_G0.5720.98
49_I60_P0.5700.98
51_L55_L0.5650.98
31_A50_A0.5490.98
35_D42_D0.5480.98
9_T15_I0.5440.97
5_K67_D0.5430.97
36_L40_D0.5410.97
20_L52_L0.5390.97
52_L55_L0.5380.97
79_A82_L0.5330.97
73_A76_E0.5270.97
8_I58_L0.5230.97
36_L39_G0.5220.97
24_T57_G0.5210.97
41_V47_A0.5160.97
47_A50_A0.5090.96
40_D47_A0.5070.96
69_A73_A0.5010.96
20_L77_A0.5000.96
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3j3iA 6 0.939 10 0.85 Contact Map
4bjsA 3 0.561 4.4 0.873 Contact Map
1iykA 2 0.8537 3.7 0.877 Contact Map
3iu1A 1 0.9024 3.6 0.878 Contact Map
1rxtA 1 0.9024 3.3 0.881 Contact Map
4c7iA 1 0.9024 3 0.883 Contact Map
4g0dW 1 0.1951 2.9 0.884 Contact Map
2vxeA 1 0.4512 2.8 0.885 Contact Map
1iicA 1 0.8537 2.7 0.886 Contact Map
4c68A 1 0.878 2.7 0.886 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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