GREMLIN Database
Spore_YtfJ - Sporulation protein YtfJ (Spore_YtfJ)
PFAM: PF09579 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 80 (77)
Sequences: 6803 (4194)
Seq/√Len: 477.9
META: 0.892

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
49_A60_L4.1071.00
17_F43_V2.9821.00
14_K46_T2.8781.00
16_S44_S2.8081.00
19_F41_G2.7701.00
7_T54_K2.6091.00
54_K57_G2.0811.00
66_S69_D1.7141.00
3_T6_G1.6861.00
26_G34_G1.6751.00
25_E35_F1.6511.00
24_G36_G1.5981.00
5_D55_D1.5911.00
70_K73_D1.5841.00
70_K74_M1.5731.00
52_V58_V1.5391.00
27_G33_E1.4691.00
54_K59_R1.4581.00
52_V61_L1.4321.00
49_A63_V1.3961.00
12_V50_F1.3831.00
15_V45_I1.3731.00
18_G42_G1.3421.00
74_M77_D1.2771.00
14_K44_S1.2741.00
60_L63_V1.2121.00
51_L63_V1.2111.00
21_A39_G1.1941.00
28_G31_G1.1391.00
48_V63_V1.1301.00
71_L75_V1.1221.00
14_K48_V1.0591.00
12_V51_L1.0521.00
66_S70_K1.0401.00
5_D54_K0.9881.00
5_D56_G0.9781.00
6_G55_D0.9491.00
67_T77_D0.9491.00
12_V48_V0.9331.00
68_L72_I0.9261.00
7_T58_V0.9191.00
28_G32_G0.9111.00
25_E34_G0.9091.00
51_L61_L0.9051.00
67_T70_K0.8991.00
24_G34_G0.8991.00
24_G41_G0.8961.00
9_I50_F0.8861.00
28_G33_E0.8851.00
53_I58_V0.8731.00
4_G56_G0.8681.00
13_S45_I0.8681.00
20_G36_G0.8381.00
67_T75_V0.8311.00
23_G37_G0.8281.00
3_T10_I0.8251.00
51_L60_L0.8241.00
22_G38_G0.8041.00
75_V79_I0.8001.00
20_G40_G0.7981.00
9_I52_V0.7941.00
52_V59_R0.7851.00
14_K43_V0.7771.00
27_G30_K0.7731.00
9_I51_L0.7611.00
14_K64_K0.7511.00
74_M78_L0.7501.00
26_G32_G0.7471.00
27_G32_G0.7381.00
26_G36_G0.7351.00
23_G35_F0.7331.00
9_I53_I0.7281.00
20_G41_G0.7241.00
50_F58_V0.7161.00
3_T8_T0.7051.00
72_I75_V0.7041.00
29_K32_G0.7011.00
25_E33_E0.7001.00
50_F63_V0.6851.00
25_E37_G0.6821.00
7_T52_V0.6801.00
14_K45_I0.6771.00
50_F60_L0.6691.00
29_K33_E0.6631.00
70_K76_P0.6621.00
69_D72_I0.6611.00
19_F23_G0.6431.00
54_K58_V0.6341.00
73_D76_P0.6291.00
10_I53_I0.6261.00
59_R69_D0.6210.99
71_L76_P0.6170.99
13_S49_A0.6160.99
26_G33_E0.6110.99
73_D79_I0.6010.99
65_D74_M0.5940.99
13_S48_V0.5920.99
16_S42_G0.5880.99
27_G31_G0.5850.99
12_V45_I0.5710.99
18_G40_G0.5650.99
9_I13_S0.5600.99
68_L76_P0.5600.99
73_D77_D0.5450.99
13_S52_V0.5420.99
43_V59_R0.5310.98
68_L77_D0.5290.98
46_T64_K0.5120.98
66_S79_I0.5100.98
10_I13_S0.5090.98
10_I45_I0.5060.98
3_T9_I0.5030.98
8_T53_I0.5010.98
15_V21_A0.5010.98
22_G36_G0.5000.98
11_P78_L0.5000.98
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2p51A 1 0.325 5.4 0.886 Contact Map
1uvqC 1 0.25 3.2 0.898 Contact Map
2c5qA 3 0.975 2.8 0.901 Contact Map
4ae2A 3 0.45 2.5 0.903 Contact Map
1uocA 1 0.4125 2 0.908 Contact Map
3smtA 2 0.3875 1.9 0.909 Contact Map
2v7kA 1 0.3375 1.9 0.909 Contact Map
4zcfA 2 0.35 1.7 0.912 Contact Map
1vw44 1 1 1.7 0.912 Contact Map
4d0i1 1 0.2625 1.6 0.913 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0042 seconds.