Phasin_2 - PFAM28P - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Phasin_2 - Phasin protein

PFAM:	PF09361	Sequences: EQFAAAAKANLEALEKSASAAAKGAEALAAKQLEAAKANLEAAFAAAKALLGAKSPQEAVELQTEFARKAFEKAVAQARELAELAAKAAAEAAKPIEARV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_10
Length:	100 (96)
Sequences:	34496 (19973)
Seq/√Len:	2038.4
META:	0.943

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
26_E	30_A	2.259	1.00
68_R	72_E	2.254	1.00
61_E	65_E	2.249	1.00
37_K	41_E	2.095	1.00
31_K	80_E	2.043	1.00
42_A	73_K	1.971	1.00
48_K	52_G	1.816	1.00
55_S	58_E	1.791	1.00
23_K	26_E	1.778	1.00
58_E	61_E	1.775	1.00
57_Q	61_E	1.713	1.00
38_A	73_K	1.685	1.00
83_E	87_K	1.677	1.00
87_K	91_E	1.632	1.00
49_A	62_L	1.621	1.00
49_A	65_E	1.606	1.00
35_A	77_Q	1.574	1.00
76_A	79_R	1.532	1.00
65_E	68_R	1.520	1.00
72_E	76_A	1.497	1.00
30_A	34_E	1.456	1.00
41_E	45_A	1.436	1.00
5_A	9_A	1.429	1.00
78_A	82_A	1.391	1.00
79_R	83_E	1.384	1.00
47_A	51_L	1.373	1.00
69_K	72_E	1.366	1.00
94_K	98_A	1.345	1.00
4_A	8_K	1.344	1.00
24_G	88_A	1.337	1.00
25_A	29_A	1.332	1.00
23_K	27_A	1.330	1.00
27_A	87_K	1.315	1.00
18_A	21_A	1.314	1.00
74_A	78_A	1.297	1.00
87_K	90_A	1.236	1.00
8_K	12_E	1.233	1.00
42_A	69_K	1.232	1.00
45_A	49_A	1.229	1.00
65_E	69_K	1.136	1.00
69_K	73_K	1.134	1.00
12_E	16_K	1.133	1.00
19_S	23_K	1.130	1.00
32_Q	36_A	1.125	1.00
5_A	8_K	1.125	1.00
15_E	19_S	1.102	1.00
94_K	97_E	1.097	1.00
38_A	42_A	1.084	1.00
63_Q	66_F	1.083	1.00
14_L	18_A	1.081	1.00
34_E	38_A	1.070	1.00
39_N	43_A	1.061	1.00
16_K	20_A	1.057	1.00
89_A	92_A	1.042	1.00
29_A	32_Q	1.041	1.00
7_A	10_N	1.040	1.00
86_A	90_A	1.034	1.00
10_N	13_A	1.022	1.00
53_A	59_A	1.014	1.00
31_K	84_L	1.000	1.00
35_A	39_N	0.999	1.00
34_E	37_K	0.997	1.00
31_K	34_E	0.970	1.00
91_E	94_K	0.966	1.00
53_A	62_L	0.958	1.00
76_A	80_E	0.958	1.00
81_L	85_A	0.955	1.00
42_A	45_A	0.937	1.00
10_N	14_L	0.937	1.00
9_A	12_E	0.935	1.00
46_A	66_F	0.927	1.00
93_A	97_E	0.908	1.00
43_A	47_A	0.908	1.00
27_A	30_A	0.901	1.00
46_A	49_A	0.872	1.00
80_E	83_E	0.862	1.00
90_A	94_K	0.859	1.00
29_A	33_L	0.858	1.00
66_F	70_A	0.857	1.00
39_N	77_Q	0.853	1.00
64_T	68_R	0.848	1.00
56_P	59_A	0.827	1.00
20_A	91_E	0.816	1.00
45_A	48_K	0.806	1.00
12_E	15_E	0.780	1.00
20_A	23_K	0.760	1.00
84_L	88_A	0.758	1.00
46_A	62_L	0.754	1.00
21_A	24_G	0.750	1.00
85_A	89_A	0.749	1.00
44_F	47_A	0.746	1.00
70_A	74_A	0.739	1.00
63_Q	67_A	0.736	1.00
44_F	48_K	0.728	1.00
28_L	81_L	0.707	1.00
18_A	22_A	0.706	1.00
60_V	63_Q	0.697	1.00
17_S	95_P	0.697	1.00
16_K	98_A	0.695	1.00
6_A	10_N	0.694	1.00
54_K	58_E	0.691	1.00
16_K	19_S	0.689	1.00
39_N	42_A	0.688	1.00
58_E	62_L	0.679	1.00
23_K	91_E	0.679	1.00
77_Q	81_L	0.679	1.00
15_E	18_A	0.676	1.00
83_E	86_A	0.669	1.00
38_A	41_E	0.660	1.00
6_A	9_A	0.653	1.00
8_K	15_E	0.650	1.00
3_F	7_A	0.643	1.00
75_V	79_R	0.641	1.00
40_L	44_F	0.639	1.00
36_A	40_L	0.636	1.00
39_N	74_A	0.634	1.00
4_A	7_A	0.633	1.00
26_E	29_A	0.625	1.00
89_A	93_A	0.624	1.00
41_E	44_F	0.624	1.00
49_A	52_G	0.614	1.00
82_A	86_A	0.614	1.00
70_A	73_K	0.611	1.00
19_S	22_A	0.601	1.00
31_K	77_Q	0.591	1.00
3_F	6_A	0.589	1.00
73_K	76_A	0.587	1.00
62_L	65_E	0.577	1.00
61_E	64_T	0.577	1.00
33_L	37_K	0.565	1.00
75_V	78_A	0.564	1.00
71_F	75_V	0.560	1.00
31_K	35_A	0.556	1.00
85_A	88_A	0.554	1.00
56_P	60_V	0.553	1.00
92_A	96_I	0.536	1.00
38_A	77_Q	0.533	1.00
30_A	37_K	0.530	1.00
17_S	21_A	0.529	1.00
27_A	31_K	0.528	1.00
54_K	59_A	0.525	1.00
56_P	63_Q	0.504	1.00
82_A	85_A	0.501	1.00
21_A	25_A	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2a01A	1	0.99	11.1	0.818	Contact Map
3s84A	2	0.99	8.6	0.827	Contact Map
2ca5A	1	0.67	8.1	0.829	Contact Map
3ok8A	2	0.78	7.6	0.83	Contact Map
2j6yA	2	0.82	6.2	0.838	Contact Map
1eq1A	1	1	6.1	0.839	Contact Map
3r2pA	2	0.99	5.7	0.84	Contact Map
2lemA	1	0.99	5.5	0.842	Contact Map
2yktA	2	0.78	4.9	0.845	Contact Map
4ui9I	1	1	4.9	0.846	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0055 seconds.