GREMLIN Database
NADH_dhqG_C - NADH-ubiquinone oxidoreductase subunit G, C-terminal
PFAM: PF09326 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 51 (43)
Sequences: 5001 (2560)
Seq/√Len: 390.5
META: 0.902

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
39_N42_A3.7441.00
13_I16_L2.6251.00
9_D12_D2.5701.00
11_A14_A2.0971.00
14_A17_A1.9931.00
39_N50_E1.7121.00
34_D37_L1.6321.00
46_A50_E1.6251.00
37_L42_A1.5171.00
47_V51_C1.4541.00
12_D15_A1.3411.00
29_A33_E1.3101.00
40_P44_A1.2951.00
14_A18_G1.2531.00
37_L49_A1.2081.00
34_D39_N1.1891.00
35_F51_C1.1631.00
37_L44_A1.1191.00
45_S48_M1.0581.00
15_A19_L1.0551.00
38_T42_A1.0431.00
36_Y46_A0.9701.00
13_I17_A0.9351.00
12_D17_A0.9191.00
37_L46_A0.8731.00
21_G24_D0.8621.00
12_D16_L0.8541.00
28_F32_V0.8481.00
23_L28_F0.8321.00
31_P35_F0.7901.00
33_E37_L0.7891.00
9_D14_A0.7831.00
20_G24_D0.7791.00
10_A14_A0.7751.00
34_D49_A0.7731.00
34_D38_T0.7701.00
15_A20_G0.7521.00
23_L30_S0.7521.00
9_D13_I0.7421.00
17_A21_G0.7321.00
15_A36_Y0.7261.00
30_S33_E0.6870.99
32_V49_A0.6810.99
28_F33_E0.6700.99
44_A50_E0.6630.99
38_T47_V0.6610.99
33_E48_M0.6590.99
28_F41_I0.6560.99
46_A51_C0.6550.99
47_V50_E0.6460.99
40_P43_R0.6290.99
19_L23_L0.6230.99
45_S51_C0.6030.99
38_T46_A0.5930.98
35_F38_T0.5750.98
16_L19_L0.5710.98
33_E49_A0.5410.97
9_D15_A0.5330.97
14_A29_A0.5270.97
10_A22_K0.5260.97
23_L26_A0.5250.97
32_V38_T0.5100.96
19_L24_D0.5030.96
38_T49_A0.5000.96
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3achA 1 0.9216 6.4 0.864 Contact Map
1uwwA 2 0.9216 4.7 0.872 Contact Map
3pgbA 2 0.5882 2.4 0.889 Contact Map
2zvmU 1 0.2549 2.3 0.891 Contact Map
2kyjA 1 0.451 2.1 0.893 Contact Map
3ulkA 3 0.3922 1.5 0.901 Contact Map
2i53A 1 0.5294 1.4 0.903 Contact Map
3ig5A 1 0.902 1.3 0.906 Contact Map
4btpA 3 0.8824 1.3 0.906 Contact Map
4incA 2 0.0588 1.2 0.906 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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