Acetone_carb_G - PFAM28P - GREMLIN Contacts

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Acetone_carb_G - Acetone carboxylase gamma subunit

PFAM:	PF08882	Sequences: VPWTEYILLPLGEHLYIVRKGDGERWVCKCDCGHELGDARENYKLGALVYVRDPREIHPEIYPYTFAPDPEWVRIREFYCPGCGTLLEVEYLPPGYPVLHDIEPDIDALYRRWL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_10
Length:	114 (110)
Sequences:	2015 (1114)
Seq/√Len:	106.2
META:	0.935

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
50_Y	79_Y	3.504	1.00
41_E	45_L	3.430	1.00
78_F	98_V	3.083	1.00
51_V	74_R	2.908	1.00
25_R	35_E	2.848	1.00
32_C	83_C	2.816	1.00
47_A	87_L	2.497	1.00
40_R	107_D	2.401	1.00
100_H	103_E	2.351	1.00
14_H	31_D	2.041	1.00
53_D	57_I	1.994	1.00
25_R	37_G	1.907	1.00
42_N	100_H	1.902	1.00
36_L	47_A	1.881	1.00
80_C	83_C	1.859	1.00
108_A	112_R	1.851	1.00
32_C	80_C	1.850	1.00
37_G	46_G	1.801	1.00
30_C	85_T	1.749	1.00
34_H	82_G	1.693	1.00
48_L	84_G	1.640	1.00
62_Y	65_T	1.636	1.00
58_H	91_Y	1.580	1.00
59_P	67_A	1.552	1.00
44_K	90_E	1.544	1.00
8_L	29_K	1.523	1.00
64_Y	67_A	1.519	1.00
29_K	35_E	1.477	1.00
3_W	16_Y	1.463	1.00
68_P	73_V	1.434	1.00
54_P	57_I	1.422	1.00
9_L	17_I	1.360	1.00
49_V	98_V	1.355	1.00
59_P	64_Y	1.327	0.99
52_R	77_E	1.323	0.99
32_C	82_G	1.319	0.99
58_H	68_P	1.314	0.99
63_P	67_A	1.209	0.99
19_R	24_E	1.165	0.99
49_V	76_R	1.165	0.99
41_E	46_G	1.149	0.98
20_K	35_E	1.137	0.98
108_A	111_R	1.119	0.98
78_F	99_L	1.113	0.98
93_P	96_Y	1.092	0.98
50_Y	57_I	1.052	0.97
30_C	83_C	1.042	0.97
79_Y	86_L	1.028	0.97
62_Y	67_A	1.027	0.97
13_E	108_A	1.010	0.96
16_Y	31_D	1.006	0.96
72_W	90_E	0.999	0.96
86_L	89_V	0.995	0.96
57_I	75_I	0.991	0.96
88_E	101_D	0.983	0.96
24_E	40_R	0.971	0.95
6_Y	19_R	0.961	0.95
24_E	110_Y	0.956	0.95
106_I	110_Y	0.936	0.94
27_V	35_E	0.936	0.94
96_Y	99_L	0.934	0.94
63_P	66_F	0.924	0.94
76_R	92_L	0.920	0.94
12_G	101_D	0.912	0.94
54_P	72_W	0.891	0.93
54_P	58_H	0.867	0.92
21_G	24_E	0.865	0.92
8_L	26_W	0.864	0.92
36_L	87_L	0.855	0.91
62_Y	66_F	0.852	0.91
76_R	98_V	0.852	0.91
66_F	69_D	0.846	0.91
43_Y	101_D	0.839	0.91
20_K	23_G	0.825	0.90
75_I	88_E	0.820	0.90
12_G	88_E	0.819	0.89
27_V	33_G	0.810	0.89
86_L	112_R	0.805	0.89
4_T	46_G	0.803	0.89
3_W	9_L	0.801	0.88
43_Y	47_A	0.787	0.88
58_H	67_A	0.784	0.87
55_R	70_P	0.775	0.87
3_W	7_I	0.772	0.87
51_V	76_R	0.769	0.86
74_R	92_L	0.759	0.86
4_T	112_R	0.753	0.85
47_A	89_V	0.738	0.84
47_A	102_I	0.738	0.84
30_C	80_C	0.736	0.84
7_I	10_P	0.736	0.84
72_W	88_E	0.726	0.83
28_C	37_G	0.722	0.83
92_L	96_Y	0.717	0.82
68_P	75_I	0.715	0.82
69_D	73_V	0.715	0.82
43_Y	102_I	0.710	0.82
73_V	94_P	0.704	0.81
107_D	111_R	0.704	0.81
65_T	68_P	0.698	0.81
62_Y	68_P	0.691	0.80
34_H	46_G	0.679	0.79
90_E	99_L	0.676	0.78
37_G	45_L	0.675	0.78
7_I	16_Y	0.671	0.78
67_A	99_L	0.670	0.78
28_C	31_D	0.668	0.78
62_Y	76_R	0.658	0.76
19_R	22_D	0.654	0.76
30_C	33_G	0.651	0.76
49_V	78_F	0.649	0.76
4_T	111_R	0.644	0.75
10_P	43_Y	0.643	0.75
31_D	65_T	0.642	0.75
8_L	13_E	0.633	0.74
25_R	38_D	0.632	0.74
99_L	103_E	0.628	0.73
73_V	89_V	0.627	0.73
84_G	89_V	0.621	0.72
82_G	85_T	0.614	0.71
29_K	85_T	0.613	0.71
103_E	107_D	0.611	0.71
17_I	39_A	0.610	0.71
27_V	30_C	0.608	0.71
6_Y	46_G	0.607	0.71
48_L	86_L	0.600	0.70
6_Y	10_P	0.598	0.69
52_R	60_E	0.597	0.69
3_W	35_E	0.596	0.69
73_V	91_Y	0.594	0.69
55_R	67_A	0.591	0.69
25_R	34_H	0.585	0.68
92_L	95_G	0.582	0.67
82_G	87_L	0.580	0.67
3_W	31_D	0.578	0.67
53_D	82_G	0.576	0.67
35_E	41_E	0.572	0.66
53_D	72_W	0.561	0.65
45_L	98_V	0.560	0.64
58_H	70_P	0.551	0.63
93_P	97_P	0.551	0.63
35_E	89_V	0.551	0.63
39_A	100_H	0.549	0.63
70_P	74_R	0.549	0.63
44_K	88_E	0.548	0.63
3_W	104_P	0.546	0.62
75_I	89_V	0.536	0.61
20_K	24_E	0.534	0.61
51_V	60_E	0.533	0.61
77_E	92_L	0.532	0.61
26_W	106_I	0.532	0.61
31_D	85_T	0.529	0.60
50_Y	77_E	0.528	0.60
77_E	89_V	0.526	0.60
19_R	26_W	0.524	0.59
34_H	37_G	0.513	0.58
58_H	61_I	0.513	0.58
70_P	95_G	0.511	0.57
31_D	84_G	0.510	0.57
39_A	106_I	0.509	0.57
67_A	70_P	0.506	0.57
50_Y	84_G	0.505	0.57
52_R	95_G	0.504	0.56
79_Y	84_G	0.502	0.56
104_P	110_Y	0.500	0.56

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4bbjA	1	0.1228	42.9	0.907	Contact Map
1yuzA	2	0.4386	42.1	0.908	Contact Map
2kdxA	1	0.5789	40.9	0.909	Contact Map
1lkoA	3	0.5263	34.4	0.912	Contact Map
4l2nA	2	0.6754	26.7	0.917	Contact Map
4y97B	1	0.4561	24.6	0.918	Contact Map
5aunA	1	0.7632	22.9	0.92	Contact Map
3floB	1	0.6491	22.7	0.92	Contact Map
1yk4A	1	0.4561	22.3	0.92	Contact Map
4tpuA	3	0.5175	19.2	0.923	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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