DUF1822 - PFAM28P - GREMLIN Contacts

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DUF1822 - Protein of unknown function (DUF1822)

PFAM:	PF08852	Sequences: LPLSPEARQQAWQFSQQQSNPEKAWQVYLNTLALLAVLPWLQEMGIETDLEVSDSWNPLPSLWEDVADLAITGFGRLECIPVEPLDDEEVRVPQEWVDIPDRIGDYYVAVQVDEELEEARLLGFTTHVQLNQGNYDPSDRTYELPLSQLIPDLNLLEVLAQLLPEEPTRAAVAPLPTLSLTQAENLLSQLQNIFEAGWQTWEALLAPPEWRQALYFRRQGLPEQWSLGQWLQNGVSQLATTLGWETRWLAAALLGARSPNNPEEGVRRAKLIDLGLQLAGQPVALLVALTPESDEEISIRVQLYPTGGQTYLPPGLKLRLLDESGEVFQEVQARSQDNYIQLKFSGEPGERFSVEVSLGDASITENFV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_10
Length:	368 (366)
Sequences:	741 (673)
Seq/√Len:	35.2
META:	0.483

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
303_L	316_L	3.970	1.00
346_G	350_E	3.937	1.00
334_R	337_D	3.874	1.00
355_E	362_S	3.835	1.00
301_V	354_V	3.720	1.00
36_A	119_A	3.245	1.00
322_D	350_E	3.136	1.00
37_V	79_C	3.027	1.00
185_N	189_Q	3.019	1.00
227_L	230_W	2.911	1.00
78_E	104_G	2.780	1.00
186_L	189_Q	2.721	1.00
14_F	31_T	2.548	1.00
252_A	255_G	2.508	1.00
39_P	43_E	2.493	1.00
92_V	130_L	2.478	1.00
322_D	331_V	2.472	1.00
270_K	274_L	2.442	1.00
226_S	230_W	2.391	1.00
319_R	355_E	2.387	1.00
345_S	350_E	2.371	1.00
320_L	328_F	2.264	0.99
125_T	144_L	2.248	0.99
112_V	119_A	2.193	0.99
329_Q	344_F	2.191	0.99
23_K	26_Q	2.114	0.99
303_L	356_V	2.093	0.99
322_D	328_F	2.074	0.99
334_R	341_Q	1.991	0.98
329_Q	342_L	1.973	0.98
71_I	144_L	1.956	0.98
317_K	330_E	1.944	0.98
3_L	36_A	1.901	0.98
25_W	83_E	1.893	0.98
90_V	109_A	1.892	0.97
214_L	218_R	1.847	0.97
238_L	245_E	1.836	0.97
80_I	93_P	1.831	0.97
101_D	206_A	1.827	0.97
8_R	116_L	1.826	0.97
329_Q	337_D	1.825	0.97
91_R	144_L	1.812	0.97
230_W	235_V	1.801	0.97
108_V	155_L	1.797	0.97
322_D	346_G	1.780	0.96
333_A	337_D	1.758	0.96
338_N	341_Q	1.745	0.96
301_V	344_F	1.736	0.96
341_Q	344_F	1.729	0.96
337_D	341_Q	1.728	0.96
251_A	257_R	1.721	0.96
111_Q	120_R	1.718	0.96
151_P	155_L	1.713	0.95
244_W	248_W	1.707	0.95
352_F	367_F	1.707	0.95
150_I	154_N	1.702	0.95
302_Q	341_Q	1.681	0.95
230_W	233_N	1.669	0.95
252_A	256_A	1.659	0.95
320_L	354_V	1.658	0.95
8_R	112_V	1.652	0.94
3_L	8_R	1.641	0.94
320_L	345_S	1.601	0.93
329_Q	343_K	1.596	0.93
247_R	251_A	1.596	0.93
270_K	365_E	1.592	0.93
37_V	110_V	1.591	0.93
273_D	278_L	1.577	0.93
266_V	270_K	1.576	0.93
238_L	242_L	1.572	0.93
25_W	28_Y	1.568	0.93
17_Q	61_S	1.556	0.92
301_V	329_Q	1.555	0.92
187_L	190_L	1.537	0.92
288_A	315_G	1.534	0.92
247_R	252_A	1.530	0.92
334_R	338_N	1.529	0.92
331_V	354_V	1.515	0.91
320_L	329_Q	1.511	0.91
242_L	245_E	1.490	0.91
78_E	102_R	1.483	0.91
301_V	320_L	1.482	0.90
305_P	367_F	1.472	0.90
122_L	149_L	1.445	0.89
329_Q	345_S	1.427	0.89
302_Q	337_D	1.423	0.89
18_Q	27_V	1.409	0.88
214_L	219_Q	1.402	0.88
273_D	276_L	1.395	0.88
253_L	256_A	1.393	0.87
229_Q	232_Q	1.382	0.87
230_W	234_G	1.372	0.87
90_V	149_L	1.366	0.86
113_D	117_E	1.364	0.86
307_G	368_V	1.364	0.86
230_W	236_S	1.356	0.86
7_A	35_L	1.355	0.86
227_L	231_L	1.344	0.86
339_Y	342_L	1.343	0.85
127_H	142_Y	1.341	0.85
246_T	251_A	1.338	0.85
269_A	272_I	1.333	0.85
239_A	242_L	1.316	0.84
1_L	43_E	1.303	0.84
320_L	331_V	1.301	0.84
328_F	339_Y	1.296	0.83
81_P	110_V	1.293	0.83
212_Q	215_Y	1.284	0.83
238_L	244_W	1.274	0.82
273_D	277_Q	1.272	0.82
298_S	322_D	1.270	0.82
273_D	334_R	1.265	0.82
299_I	346_G	1.260	0.82
14_F	56_W	1.259	0.82
77_L	104_G	1.256	0.81
322_D	329_Q	1.247	0.81
99_I	142_Y	1.234	0.80
225_W	230_W	1.233	0.80
76_R	317_K	1.233	0.80
273_D	337_D	1.226	0.80
338_N	342_L	1.216	0.79
29_L	112_V	1.216	0.79
15_S	39_P	1.215	0.79
347_E	350_E	1.214	0.79
243_G	248_W	1.212	0.79
124_F	152_D	1.211	0.79
226_S	236_S	1.207	0.79
248_W	251_A	1.200	0.78
3_L	20_N	1.200	0.78
4_S	46_I	1.194	0.78
37_V	104_G	1.194	0.78
334_R	344_F	1.189	0.78
44_M	126_T	1.186	0.77
198_W	202_E	1.186	0.77
211_R	215_Y	1.171	0.77
65_D	80_I	1.170	0.76
322_D	353_S	1.170	0.76
331_V	343_K	1.161	0.76
150_I	156_L	1.158	0.76
225_W	228_G	1.152	0.75
328_F	358_L	1.149	0.75
44_M	156_L	1.146	0.75
254_L	258_S	1.144	0.75
288_A	301_V	1.141	0.75
300_R	339_Y	1.140	0.75
340_I	343_K	1.135	0.74
158_V	164_P	1.133	0.74
303_L	363_I	1.133	0.74
38_L	50_L	1.132	0.74
283_V	316_L	1.131	0.74
67_A	80_I	1.115	0.73
70_A	76_R	1.108	0.72
68_D	78_E	1.104	0.72
331_V	345_S	1.095	0.72
344_F	367_F	1.094	0.71
160_A	163_L	1.093	0.71
361_A	364_T	1.090	0.71
253_L	258_S	1.085	0.71
29_L	116_L	1.080	0.70
238_L	241_T	1.075	0.70
79_C	110_V	1.074	0.70
346_G	352_F	1.074	0.70
96_W	198_W	1.071	0.70
320_L	342_L	1.070	0.70
38_L	42_Q	1.068	0.70
268_R	274_L	1.067	0.70
339_Y	343_K	1.067	0.70
187_L	265_G	1.063	0.69
215_Y	218_R	1.061	0.69
262_P	265_G	1.061	0.69
16_Q	64_E	1.058	0.69
31_T	55_S	1.057	0.69
355_E	364_T	1.057	0.69
30_N	81_P	1.056	0.69
245_E	248_W	1.056	0.69
302_Q	319_R	1.054	0.69
243_G	249_L	1.053	0.68
228_G	233_N	1.052	0.68
40_W	112_V	1.045	0.68
183_A	186_L	1.039	0.67
286_L	320_L	1.039	0.67
112_V	116_L	1.033	0.67
197_G	200_T	1.029	0.67
302_Q	338_N	1.024	0.66
333_A	338_N	1.022	0.66
198_W	201_W	1.021	0.66
108_V	120_R	1.020	0.66
329_Q	336_Q	1.019	0.66
253_L	257_R	1.017	0.66
146_L	192_N	1.015	0.66
174_P	178_L	1.003	0.65
302_Q	350_E	1.001	0.65
353_S	366_N	0.999	0.64
257_R	261_N	0.998	0.64
159_L	163_L	0.996	0.64
21_P	112_V	0.992	0.64
328_F	336_Q	0.991	0.64
239_A	243_G	0.991	0.64
269_A	273_D	0.990	0.64
241_T	244_W	0.987	0.63
299_I	344_F	0.987	0.63
1_L	39_P	0.986	0.63
15_S	28_Y	0.985	0.63
248_W	259_P	0.985	0.63
298_S	343_K	0.984	0.63
34_L	56_W	0.971	0.62
14_F	61_S	0.971	0.62
322_D	336_Q	0.965	0.62
329_Q	350_E	0.959	0.61
144_L	175_L	0.959	0.61
175_L	202_E	0.957	0.61
109_A	149_L	0.957	0.61
215_Y	219_Q	0.954	0.61
286_L	336_Q	0.954	0.61
86_D	90_V	0.948	0.60
3_L	11_A	0.947	0.60
267_R	335_S	0.945	0.60
104_G	107_Y	0.944	0.60
228_G	237_Q	0.943	0.60
68_D	102_R	0.940	0.60
320_L	350_E	0.937	0.59
101_D	156_L	0.932	0.59
281_Q	342_L	0.932	0.59
352_F	356_V	0.928	0.59
246_T	250_A	0.925	0.58
302_Q	329_Q	0.923	0.58
301_V	322_D	0.922	0.58
8_R	84_P	0.922	0.58
230_W	237_Q	0.918	0.58
232_Q	237_Q	0.915	0.57
92_V	333_A	0.909	0.57
228_G	232_Q	0.908	0.57
74_F	156_L	0.906	0.57
288_A	344_F	0.905	0.57
328_F	338_N	0.902	0.56
344_F	352_F	0.902	0.56
247_R	250_A	0.899	0.56
228_G	236_S	0.894	0.56
12_W	16_Q	0.894	0.56
123_G	316_L	0.888	0.55
225_W	231_L	0.887	0.55
328_F	331_V	0.885	0.55
149_L	320_L	0.884	0.55
227_L	233_N	0.883	0.55
27_V	34_L	0.882	0.55
93_P	149_L	0.878	0.54
41_L	155_L	0.877	0.54
239_A	245_E	0.876	0.54
121_L	255_G	0.875	0.54
110_V	318_L	0.875	0.54
354_V	366_N	0.872	0.54
303_L	347_E	0.870	0.54
11_A	32_L	0.869	0.54
229_Q	234_G	0.869	0.54
59_L	62_L	0.867	0.53
243_G	247_R	0.866	0.53
12_W	24_A	0.854	0.52
241_T	247_R	0.852	0.52
97_V	130_L	0.852	0.52
227_L	235_V	0.847	0.52
62_L	76_R	0.842	0.51
234_G	249_L	0.833	0.50
28_Y	33_A	0.832	0.50
53_S	56_W	0.830	0.50
244_W	247_R	0.830	0.50
318_L	331_V	0.830	0.50
68_D	96_W	0.829	0.50
81_P	154_N	0.828	0.50
84_P	112_V	0.823	0.50
36_A	115_E	0.819	0.49
227_L	237_Q	0.818	0.49
1_L	63_W	0.817	0.49
225_W	229_Q	0.811	0.49
311_Y	340_I	0.810	0.49
25_W	116_L	0.810	0.49
7_A	32_L	0.808	0.48
67_A	78_E	0.807	0.48
283_V	305_P	0.807	0.48
312_L	333_A	0.806	0.48
329_Q	339_Y	0.805	0.48
299_I	352_F	0.805	0.48
34_L	107_Y	0.804	0.48
83_E	116_L	0.804	0.48
53_S	102_R	0.803	0.48
25_W	29_L	0.801	0.48
19_S	27_V	0.799	0.48
363_I	366_N	0.799	0.48
173_A	176_P	0.799	0.48
288_A	331_V	0.799	0.48
292_E	298_S	0.782	0.46
78_E	106_Y	0.781	0.46
50_L	53_S	0.779	0.46
284_A	349_G	0.775	0.46
204_L	217_R	0.775	0.46
330_E	337_D	0.774	0.45
3_L	110_V	0.773	0.45
296_E	350_E	0.772	0.45
258_S	266_V	0.771	0.45
248_W	252_A	0.769	0.45
114_E	346_G	0.768	0.45
44_M	106_Y	0.767	0.45
37_V	67_A	0.766	0.45
272_I	301_V	0.766	0.45
76_R	354_V	0.763	0.44
49_D	57_N	0.762	0.44
299_I	367_F	0.759	0.44
23_K	27_V	0.757	0.44
328_F	337_D	0.757	0.44
180_L	184_E	0.757	0.44
232_Q	235_V	0.751	0.43
8_R	25_W	0.751	0.43
11_A	15_S	0.749	0.43
25_W	112_V	0.749	0.43
301_V	352_F	0.747	0.43
240_T	246_T	0.746	0.43
271_L	311_Y	0.746	0.43
140_R	201_W	0.745	0.43
77_L	250_A	0.743	0.43
225_W	237_Q	0.743	0.43
50_L	56_W	0.742	0.43
300_R	338_N	0.741	0.43
39_P	61_S	0.741	0.43
68_D	95_E	0.739	0.42
94_Q	99_I	0.735	0.42
15_S	64_E	0.735	0.42
301_V	328_F	0.732	0.42
228_G	231_L	0.730	0.42
132_Q	170_A	0.728	0.42
2_P	108_V	0.727	0.41
125_T	157_E	0.727	0.41
302_Q	327_V	0.725	0.41
4_S	9_Q	0.725	0.41
141_T	356_V	0.724	0.41
226_S	229_Q	0.723	0.41
320_L	346_G	0.722	0.41
57_N	149_L	0.722	0.41
152_D	155_L	0.721	0.41
4_S	116_L	0.720	0.41
251_A	254_L	0.714	0.40
266_V	274_L	0.710	0.40
226_S	233_N	0.710	0.40
120_R	127_H	0.709	0.40
225_W	233_N	0.708	0.40
158_V	161_Q	0.707	0.40
241_T	245_E	0.707	0.40
332_Q	360_D	0.706	0.40
143_E	147_S	0.706	0.40
226_S	234_G	0.704	0.40
240_T	243_G	0.703	0.39
68_D	106_Y	0.703	0.39
283_V	356_V	0.702	0.39
225_W	234_G	0.702	0.39
296_E	322_D	0.701	0.39
27_V	62_L	0.698	0.39
237_Q	240_T	0.698	0.39
331_V	337_D	0.696	0.39
65_D	78_E	0.695	0.39
226_S	231_L	0.694	0.39
94_Q	100_P	0.692	0.39
235_V	245_E	0.692	0.39
276_L	363_I	0.692	0.39
239_A	244_W	0.691	0.38
334_R	343_K	0.690	0.38
238_L	243_G	0.690	0.38
344_F	363_I	0.689	0.38
229_Q	235_V	0.689	0.38
43_E	83_E	0.688	0.38
102_R	106_Y	0.686	0.38
352_F	363_I	0.684	0.38
78_E	105_D	0.683	0.38
317_K	332_Q	0.682	0.38
227_L	238_L	0.678	0.37
3_L	28_Y	0.677	0.37
1_L	300_R	0.677	0.37
65_D	68_D	0.674	0.37
235_V	246_T	0.669	0.37
245_E	254_L	0.667	0.37
228_G	234_G	0.667	0.37
231_L	237_Q	0.666	0.36
47_E	59_L	0.666	0.36
353_S	367_F	0.664	0.36
241_T	246_T	0.663	0.36
82_V	139_D	0.662	0.36
327_V	346_G	0.662	0.36
239_A	249_L	0.661	0.36
333_A	367_F	0.661	0.36
286_L	326_E	0.660	0.36
203_A	335_S	0.657	0.36
99_I	111_Q	0.656	0.36
109_A	147_S	0.656	0.36
227_L	232_Q	0.656	0.36
267_R	296_E	0.655	0.36
66_V	93_P	0.654	0.36
305_P	308_G	0.653	0.35
308_G	357_S	0.653	0.35
185_N	200_T	0.651	0.35
299_I	304_Y	0.648	0.35
329_Q	341_Q	0.647	0.35
318_L	337_D	0.646	0.35
255_G	259_P	0.645	0.35
43_E	112_V	0.645	0.35
85_L	111_Q	0.643	0.35
5_P	13_Q	0.642	0.35
286_L	329_Q	0.642	0.35
211_R	214_L	0.641	0.35
102_R	124_F	0.640	0.34
184_E	189_Q	0.638	0.34
183_A	210_W	0.638	0.34
322_D	326_E	0.638	0.34
50_L	71_I	0.635	0.34
7_A	39_P	0.635	0.34
327_V	330_E	0.635	0.34
83_E	112_V	0.634	0.34
227_L	234_G	0.634	0.34
122_L	159_L	0.633	0.34
28_Y	36_A	0.632	0.34
233_N	237_Q	0.630	0.34
188_S	308_G	0.628	0.33
250_A	254_L	0.627	0.33
336_Q	343_K	0.627	0.33
267_R	298_S	0.626	0.33
68_D	198_W	0.626	0.33
142_Y	145_P	0.620	0.33
325_G	363_I	0.618	0.33
259_P	262_P	0.617	0.33
323_E	351_R	0.617	0.33
317_K	357_S	0.616	0.33
80_I	149_L	0.616	0.33
9_Q	280_G	0.614	0.32
296_E	345_S	0.614	0.32
305_P	352_F	0.613	0.32
4_S	7_A	0.612	0.32
227_L	240_T	0.604	0.32
160_A	303_L	0.604	0.32
238_L	246_T	0.604	0.32
356_V	363_I	0.603	0.32
61_S	80_I	0.602	0.32
71_I	174_P	0.601	0.31
33_A	81_P	0.600	0.31
24_A	99_I	0.600	0.31
190_L	324_S	0.599	0.31
34_L	101_D	0.599	0.31
65_D	159_L	0.596	0.31
105_D	128_V	0.595	0.31
290_T	328_F	0.594	0.31
286_L	343_K	0.592	0.31
79_C	153_L	0.592	0.31
16_Q	49_D	0.591	0.31
199_Q	295_E	0.591	0.31
285_L	337_D	0.587	0.30
76_R	200_T	0.586	0.30
37_V	108_V	0.585	0.30
28_Y	76_R	0.581	0.30
55_S	68_D	0.581	0.30
33_A	207_P	0.581	0.30
254_L	261_N	0.580	0.30
279_A	328_F	0.580	0.30
251_A	256_A	0.579	0.30
4_S	126_T	0.579	0.30
28_Y	32_L	0.578	0.30
228_G	235_V	0.578	0.30
28_Y	154_N	0.578	0.30
42_Q	45_G	0.574	0.29
320_L	338_N	0.574	0.29
361_A	366_N	0.573	0.29
312_L	352_F	0.573	0.29
17_Q	156_L	0.571	0.29
14_F	17_Q	0.570	0.29
229_Q	236_S	0.566	0.29
225_W	235_V	0.565	0.29
54_D	66_V	0.565	0.29
197_G	202_E	0.564	0.29
18_Q	61_S	0.564	0.29
269_A	364_T	0.563	0.29
42_Q	48_T	0.563	0.29
8_R	35_L	0.563	0.29
117_E	121_L	0.561	0.29
11_A	229_Q	0.561	0.29
298_S	350_E	0.560	0.29
187_L	198_W	0.559	0.28
284_A	303_L	0.559	0.28
312_L	367_F	0.559	0.28
244_W	251_A	0.557	0.28
266_V	276_L	0.556	0.28
14_F	27_V	0.556	0.28
254_L	292_E	0.555	0.28
348_P	351_R	0.553	0.28
134_N	240_T	0.553	0.28
293_S	323_E	0.552	0.28
43_E	64_E	0.551	0.28
285_L	344_F	0.551	0.28
263_E	273_D	0.550	0.28
248_W	292_E	0.549	0.28
333_A	355_E	0.547	0.28
106_Y	198_W	0.547	0.28
341_Q	345_S	0.546	0.28
257_R	300_R	0.545	0.27
300_R	342_L	0.542	0.27
197_G	201_W	0.541	0.27
233_N	236_S	0.540	0.27
337_D	340_I	0.538	0.27
40_W	44_M	0.537	0.27
319_R	357_S	0.536	0.27
134_N	138_S	0.535	0.27
296_E	328_F	0.534	0.27
133_G	138_S	0.534	0.27
42_Q	109_A	0.532	0.27
240_T	248_W	0.532	0.27
350_E	354_V	0.532	0.27
283_V	301_V	0.531	0.27
37_V	129_Q	0.530	0.26
71_I	309_Q	0.529	0.26
258_S	262_P	0.528	0.26
170_A	176_P	0.528	0.26
249_L	254_L	0.526	0.26
140_R	202_E	0.525	0.26
30_N	67_A	0.525	0.26
29_L	83_E	0.523	0.26
234_G	237_Q	0.523	0.26
247_R	259_P	0.523	0.26
154_N	158_V	0.523	0.26
203_A	366_N	0.523	0.26
156_L	166_E	0.523	0.26
256_A	269_A	0.523	0.26
165_E	354_V	0.522	0.26
4_S	8_R	0.522	0.26
27_V	31_T	0.519	0.26
11_A	14_F	0.519	0.26
358_L	362_S	0.519	0.26
267_R	288_A	0.518	0.26
207_P	320_L	0.518	0.26
100_P	142_Y	0.518	0.26
9_Q	19_S	0.516	0.26
315_G	335_S	0.514	0.25
27_V	103_I	0.514	0.25
225_W	238_L	0.513	0.25
210_W	287_V	0.513	0.25
30_N	80_I	0.513	0.25
244_W	252_A	0.511	0.25
218_R	222_P	0.509	0.25
105_D	135_Y	0.508	0.25
171_A	179_S	0.505	0.25
75_G	78_E	0.504	0.25
244_W	250_A	0.504	0.25
103_I	289_L	0.503	0.25
113_D	144_L	0.501	0.25
68_D	99_I	0.501	0.25
121_L	323_E	0.501	0.25
10_Q	144_L	0.500	0.24

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3sd2A	2	0.2174	7.2	0.973	Contact Map
3d33A	1	0.2391	5.6	0.974	Contact Map
3a4rA	1	0.0951	4.8	0.975	Contact Map
1p94A	2	0.1033	4.7	0.975	Contact Map
2xetA	1	0.1902	4.5	0.975	Contact Map
2k7pA	1	0.2391	3.8	0.976	Contact Map
2io1B	1	0.0815	3.7	0.976	Contact Map
2l76A	1	0.1332	3.7	0.976	Contact Map
3k6dA	1	0.1603	3.7	0.976	Contact Map
1irqA	2	0.1141	3.4	0.977	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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