GREMLIN Database
YscJ_FliF_C - Flagellar M-ring protein C-terminal
PFAM: PF08345 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 152 (152)
Sequences: 18140 (12851)
Seq/√Len: 1042.4
META: 0.858

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
28_E90_K3.9021.00
9_N112_D3.1481.00
24_E94_H2.8971.00
128_E132_K2.6221.00
22_Q96_V2.4411.00
17_D103_K2.4041.00
125_A128_E2.3711.00
121_P125_A2.3311.00
107_V135_V2.2521.00
40_E84_T2.1681.00
38_R87_E2.0411.00
132_K137_F1.9481.00
133_S144_Q1.9431.00
25_Q93_R1.9141.00
37_V84_T1.8671.00
2_E10_V1.8391.00
42_T82_E1.8371.00
109_V131_V1.8291.00
26_T94_H1.8171.00
39_S85_N1.8051.00
26_T92_V1.7991.00
27_E91_T1.7871.00
31_D89_S1.6991.00
43_S81_E1.6711.00
23_V95_T1.6261.00
21_D97_R1.5981.00
41_Q83_T1.5891.00
120_S123_E1.5681.00
125_A129_A1.5601.00
119_R123_E1.5591.00
27_E93_R1.5361.00
122_E126_Q1.5111.00
19_D103_K1.5001.00
38_R88_V1.4801.00
44_E80_T1.4751.00
23_V97_R1.4611.00
25_Q97_R1.4591.00
24_E96_V1.4581.00
21_D98_A1.4571.00
23_V93_R1.4351.00
29_T93_R1.4051.00
28_E92_V1.3991.00
48_S76_S1.3961.00
123_E126_Q1.3821.00
30_Y88_V1.3661.00
36_V88_V1.3581.00
129_A146_T1.3531.00
30_Y38_R1.3191.00
41_Q81_E1.3071.00
126_Q148_V1.3011.00
129_A148_V1.2831.00
14_V107_V1.2811.00
129_A132_K1.2721.00
45_E79_R1.2511.00
17_D104_R1.2471.00
127_I147_V1.2411.00
137_F145_V1.2391.00
16_A105_L1.2231.00
133_S146_T1.2131.00
40_E82_E1.2101.00
30_Y87_E1.1921.00
29_T91_T1.1911.00
25_Q91_T1.1781.00
37_V40_E1.1691.00
110_L130_L1.1441.00
31_D34_G1.1421.00
27_E95_T1.1371.00
132_K139_A1.1291.00
2_E8_G1.1221.00
121_P124_L1.1161.00
22_Q98_A1.1161.00
2_E7_P1.1071.00
129_A133_S1.1051.00
45_E48_S1.0941.00
21_D95_T1.0821.00
43_S79_R1.0821.00
97_R101_R1.0791.00
104_R138_D1.0711.00
119_R149_N1.0681.00
4_V110_L1.0661.00
3_P11_R1.0591.00
46_S78_S1.0581.00
38_R85_N1.0561.00
56_P59_L1.0511.00
128_E146_T1.0501.00
47_S77_S1.0481.00
57_G60_S1.0441.00
5_V10_V1.0351.00
29_T89_S1.0181.00
59_L62_L1.0101.00
124_L128_E1.0011.00
5_V127_I0.9991.00
42_T84_T0.9621.00
119_R127_I0.9601.00
31_D35_G0.9451.00
32_P89_S0.9441.00
119_R124_L0.9331.00
12_V16_A0.9251.00
122_E125_A0.9131.00
58_A62_L0.9101.00
16_A102_I0.9051.00
116_Y151_P0.8861.00
116_Y149_N0.8801.00
132_K145_V0.8701.00
126_Q129_A0.8701.00
3_P10_V0.8661.00
30_Y89_S0.8661.00
34_G89_S0.8661.00
25_Q95_T0.8621.00
117_T120_S0.8561.00
22_Q99_P0.8391.00
39_S83_T0.8301.00
33_D36_V0.8281.00
58_A61_N0.8201.00
104_R141_R0.8141.00
19_D101_R0.8131.00
106_S133_S0.8081.00
45_E49_G0.8041.00
31_D36_V0.8031.00
56_P60_S0.7911.00
124_L149_N0.7881.00
117_T123_E0.7811.00
20_F99_P0.7761.00
87_E90_K0.7611.00
1_L5_V0.7601.00
105_L135_V0.7541.00
138_D142_G0.7481.00
137_F141_R0.7471.00
138_D141_R0.7461.00
111_V127_I0.7441.00
18_L102_I0.7411.00
56_P61_N0.7381.00
29_T34_G0.7361.00
44_E79_R0.7321.00
119_R122_E0.7261.00
112_D149_N0.7241.00
55_V60_S0.7171.00
65_G68_A0.7171.00
32_P35_G0.7101.00
67_A70_G0.7051.00
35_G88_V0.7051.00
45_E77_S0.7031.00
66_A70_G0.7021.00
54_G60_S0.7011.00
37_V86_Y0.6991.00
108_A130_L0.6991.00
54_G57_G0.6941.00
66_A69_A0.6891.00
42_T80_T0.6811.00
44_E78_S0.6761.00
71_A74_G0.6731.00
131_V145_V0.6721.00
46_S76_S0.6721.00
46_S49_G0.6701.00
126_Q150_M0.6561.00
68_A71_A0.6531.00
30_Y90_K0.6531.00
104_R144_Q0.6491.00
60_S63_P0.6471.00
139_A144_Q0.6451.00
116_Y119_R0.6361.00
65_G69_A0.6351.00
55_V58_A0.6301.00
128_E147_V0.6291.00
70_G73_G0.6231.00
132_K135_V0.6201.00
53_G56_P0.6171.00
10_V13_Q0.6081.00
105_L145_V0.6041.00
114_R117_T0.6001.00
32_P36_V0.5911.00
106_S144_Q0.5911.00
105_L141_R0.5911.00
10_V109_V0.5881.00
44_E47_S0.5871.00
115_T118_P0.5871.00
4_V127_I0.5851.00
128_E145_V0.5831.00
112_D116_Y0.5811.00
108_A133_S0.5791.00
15_S106_S0.5781.00
4_V150_M0.5771.00
67_A71_A0.5731.00
72_G75_S0.5711.00
47_S76_S0.5701.00
19_D97_R0.5671.00
64_P67_A0.5661.00
103_K107_V0.5661.00
68_A72_G0.5641.00
47_S75_S0.5621.00
71_A75_S0.5611.00
121_P128_E0.5611.00
5_V9_N0.5571.00
116_Y120_S0.5541.00
112_D152_F0.5541.00
53_G57_G0.5531.00
105_L108_A0.5511.00
36_V89_S0.5491.00
107_V137_F0.5491.00
118_P149_N0.5451.00
64_P69_A0.5431.00
14_V17_D0.5391.00
111_V119_R0.5341.00
106_S109_V0.5301.00
113_G116_Y0.5301.00
59_L63_P0.5291.00
107_V131_V0.5291.00
45_E78_S0.5261.00
3_P7_P0.5231.00
135_V145_V0.5221.00
102_I105_L0.5201.00
64_P71_A0.5181.00
3_P13_Q0.5171.00
51_G54_G0.5151.00
56_P63_P0.5141.00
64_P68_A0.5131.00
17_D138_D0.5111.00
69_A72_G0.5101.00
118_P151_P0.5101.00
18_L103_K0.5081.00
32_P88_V0.5081.00
110_L150_M0.5071.00
24_E92_V0.5061.00
148_V151_P0.5061.00
70_G74_G0.5051.00
124_L147_V0.5031.00
130_L146_T0.5001.00
57_G61_N0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4oycA 1 0.4803 15.2 0.91 Contact Map
3tufA 2 0.7171 14.1 0.911 Contact Map
4okrA 1 0.3553 5 0.928 Contact Map
2odpA 1 0.3618 4.8 0.928 Contact Map
4hqfA 1 0.3421 3.7 0.932 Contact Map
4icvA 1 0.3618 3.6 0.933 Contact Map
3tvyA 1 0.3092 3.4 0.933 Contact Map
3sxxA 5 0.2763 3.1 0.935 Contact Map
4hqoA 1 0.4079 2.8 0.936 Contact Map
1yj7A 3 0.9013 2.5 0.938 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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