GREMLIN Database
K167R - K167R (NUC007) repeat
PFAM: PF08065 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 110 (110)
Sequences: 556 (393)
Seq/√Len: 37.5
META: 0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
23_L104_K2.7581.00
4_P9_Q2.5621.00
99_D102_G2.4971.00
103_F107_F2.3531.00
73_K78_E2.3061.00
92_E96_P2.1970.99
59_D66_F2.1210.99
102_G107_F1.9990.99
2_K63_I1.9510.98
31_D35_E1.9280.98
1_T5_C1.8560.98
16_P20_K1.7490.97
83_S86_R1.7310.96
46_P49_T1.6920.96
6_K64_K1.6850.96
102_G109_T1.6330.95
3_M11_E1.5640.94
75_D84_K1.5460.93
106_L109_T1.5400.93
76_P87_P1.5320.93
23_L38_A1.4970.92
3_M6_K1.4930.92
94_A97_L1.4710.92
93_K96_P1.4290.90
43_T53_P1.3960.89
10_P35_E1.3940.89
3_M9_Q1.3870.89
8_P101_A1.3790.89
71_K86_R1.3600.88
90_P109_T1.3370.87
100_L109_T1.3220.86
4_P10_P1.3120.86
67_K80_V1.3050.86
89_T92_E1.2780.85
107_F110_P1.2690.84
97_L106_L1.2330.82
4_P95_Q1.2260.82
77_A88_R1.2250.82
71_K97_L1.2130.81
3_M7_S1.1960.80
44_Q98_E1.1760.79
23_L70_P1.1640.78
64_K71_K1.1410.77
44_Q88_R1.1400.77
28_G61_K1.1370.77
106_L110_P1.1320.76
48_E80_V1.1170.76
99_D106_L1.1150.75
36_L51_H1.1080.75
10_P22_R1.0970.74
57_V69_T1.0950.74
24_K32_V1.0890.74
24_K89_T1.0880.74
19_R26_P1.0860.73
62_G96_P1.0840.73
99_D107_F1.0730.73
3_M96_P1.0560.71
92_E103_F1.0370.70
14_D22_R1.0230.69
42_P62_G1.0140.68
1_T4_P1.0010.67
31_D34_E0.9980.67
96_P101_A0.9980.67
48_E58_G0.9960.67
74_L104_K0.9880.66
12_P18_S0.9600.64
61_K66_F0.9550.63
15_T25_T0.9380.62
24_K92_E0.9320.62
6_K13_V0.9310.61
53_P82_G0.9210.61
20_K35_E0.9180.60
26_P33_E0.9180.60
27_L43_T0.9120.60
4_P71_K0.9090.60
19_R39_L0.9050.59
51_H95_Q0.9040.59
87_P100_L0.9030.59
21_R37_S0.9010.59
2_K7_S0.8980.59
16_P109_T0.8960.58
6_K66_F0.8910.58
50_T73_K0.8720.56
59_D75_D0.8720.56
70_P90_P0.8640.56
54_K64_K0.8630.56
16_P22_R0.8580.55
7_S99_D0.8550.55
59_D104_K0.8500.54
32_V40_R0.8490.54
26_P107_F0.8460.54
40_R59_D0.8360.53
79_N83_S0.8220.52
25_T71_K0.8180.52
10_P13_V0.8180.52
32_V56_P0.8180.52
34_E63_I0.8120.51
4_P16_P0.8090.51
72_Q87_P0.8060.51
85_R102_G0.8010.50
57_V82_G0.7960.50
46_P71_K0.7940.49
61_K64_K0.7910.49
20_K31_D0.7880.49
57_V72_Q0.7860.49
37_S49_T0.7810.48
30_V94_A0.7680.47
20_K29_K0.7600.46
14_D42_P0.7580.46
33_E104_K0.7540.46
87_P97_L0.7520.46
1_T95_Q0.7360.44
47_G58_G0.7350.44
8_P14_D0.7260.43
65_A76_P0.7210.43
4_P101_A0.7150.43
5_C8_P0.7070.42
36_L65_A0.7040.42
8_P63_I0.7040.42
44_Q59_D0.7030.41
26_P91_K0.6960.41
23_L65_A0.6950.41
26_P42_P0.6930.41
14_D32_V0.6890.40
55_E59_D0.6870.40
27_L62_G0.6760.39
44_Q90_P0.6670.38
97_L105_E0.6630.38
57_V96_P0.6620.38
2_K9_Q0.6570.38
57_V61_K0.6560.38
18_S21_R0.6540.37
31_D68_E0.6520.37
75_D95_Q0.6450.37
54_K68_E0.6290.35
46_P70_P0.6200.35
15_T85_R0.6180.34
87_P92_E0.6110.34
72_Q81_T0.6080.34
58_G80_V0.6030.33
81_T92_E0.5880.32
60_D67_K0.5830.32
73_K103_F0.5790.31
70_P78_E0.5670.30
17_T22_R0.5620.30
86_R95_Q0.5560.30
47_G53_P0.5490.29
28_G58_G0.5470.29
44_Q81_T0.5420.29
35_E84_K0.5380.28
17_T94_A0.5340.28
27_L35_E0.5340.28
79_N89_T0.5300.28
21_R28_G0.5300.28
11_E18_S0.5300.28
22_R33_E0.5260.27
46_P69_T0.5250.27
29_K37_S0.5220.27
90_P100_L0.5210.27
85_R101_A0.5160.27
5_C66_F0.5120.26
12_P17_T0.5090.26
52_T108_Q0.5050.26
73_K88_R0.5040.26
8_P36_L0.5000.26
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2l5rA 1 0.0818 1.5 0.952 Contact Map
3uitA 3 0.3455 1.4 0.953 Contact Map
3adyA 1 0.0545 1 0.957 Contact Map
3v8xA 1 0.1727 0.9 0.958 Contact Map
1r8iA 1 0.4273 0.9 0.958 Contact Map
2mn3A 1 0.2 0.8 0.959 Contact Map
1fepA 1 0.4364 0.7 0.961 Contact Map
4h63K 1 0.3545 0.7 0.962 Contact Map
1g6uA 3 0.2909 0.6 0.962 Contact Map
3ghpA 1 0.0909 0.6 0.962 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0056 seconds.