Coat_X - PFAM28P - GREMLIN Contacts

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Coat_X - Spore Coat Protein X and V domain

PFAM:	PF07552	Sequences: EDVTQELLQVSKTKQVSRQKIIIKDSCDVTVTTTDTQAAVNLQALLQVLIALVISIDI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_10
Length:	58 (57)
Sequences:	549 (396)
Seq/√Len:	52.5
META:	0.463

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
17_S	37_Q	3.163	1.00
23_I	31_V	2.938	1.00
26_S	29_V	2.591	1.00
45_L	57_D	1.986	1.00
45_L	49_L	1.905	0.99
19_Q	33_T	1.894	0.99
8_L	52_L	1.676	0.99
14_K	21_I	1.644	0.98
33_T	39_A	1.626	0.98
17_S	35_D	1.563	0.98
39_A	42_L	1.521	0.97
21_I	41_N	1.520	0.97
20_K	28_D	1.456	0.96
42_L	55_S	1.440	0.96
46_L	50_I	1.405	0.96
5_Q	22_I	1.297	0.93
17_S	50_I	1.297	0.93
20_K	27_C	1.288	0.93
10_V	29_V	1.230	0.91
9_Q	15_Q	1.197	0.90
49_L	57_D	1.140	0.88
15_Q	19_Q	1.132	0.87
41_N	45_L	1.114	0.87
29_V	55_S	1.091	0.85
18_R	37_Q	1.070	0.84
18_R	23_I	1.056	0.84
23_I	32_T	1.036	0.82
33_T	36_T	1.010	0.81
37_Q	49_L	1.000	0.80
43_Q	47_Q	0.977	0.78
30_T	44_A	0.966	0.78
50_I	54_I	0.943	0.76
42_L	54_I	0.941	0.76
21_I	28_D	0.905	0.73
44_A	53_V	0.898	0.72
18_R	25_D	0.886	0.71
12_K	23_I	0.885	0.71
38_A	41_N	0.879	0.71
3_V	32_T	0.863	0.69
38_A	55_S	0.860	0.69
40_V	44_A	0.859	0.69
19_Q	31_V	0.842	0.67
24_K	29_V	0.842	0.67
48_V	52_L	0.827	0.66
4_T	32_T	0.818	0.65
37_Q	48_V	0.818	0.65
27_C	58_I	0.813	0.65
6_E	30_T	0.810	0.64
9_Q	42_L	0.799	0.63
20_K	52_L	0.796	0.63
36_T	46_L	0.794	0.63
7_L	25_D	0.784	0.62
19_Q	37_Q	0.778	0.61
5_Q	55_S	0.776	0.61
38_A	48_V	0.760	0.59
32_T	57_D	0.756	0.59
35_D	52_L	0.749	0.58
4_T	12_K	0.734	0.57
19_Q	49_L	0.733	0.57
4_T	13_T	0.724	0.56
7_L	45_L	0.716	0.55
39_A	51_A	0.710	0.54
21_I	30_T	0.697	0.53
13_T	30_T	0.692	0.52
3_V	9_Q	0.691	0.52
25_D	28_D	0.674	0.50
12_K	41_N	0.672	0.50
34_T	43_Q	0.663	0.49
38_A	46_L	0.661	0.49
14_K	22_I	0.660	0.49
28_D	54_I	0.655	0.49
12_K	21_I	0.652	0.48
33_T	41_N	0.652	0.48
4_T	7_L	0.638	0.47
10_V	38_A	0.604	0.43
7_L	54_I	0.578	0.41
40_V	46_L	0.575	0.40
3_V	57_D	0.575	0.40
2_D	6_E	0.535	0.36
16_V	29_V	0.528	0.36
15_Q	33_T	0.527	0.35
12_K	31_V	0.517	0.35
16_V	30_T	0.516	0.34
3_V	53_V	0.510	0.34
47_Q	58_I	0.501	0.33
12_K	22_I	0.500	0.33

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1tafB	1	0.5172	0.9	0.909	Contact Map
4tq1B	1	0.3103	0.8	0.911	Contact Map
3g9xA	1	0.3103	0.8	0.912	Contact Map
2x3lA	2	0.3966	0.7	0.915	Contact Map
2k89A	1	0.6207	0.6	0.917	Contact Map
3r4vA	1	0.8966	0.6	0.917	Contact Map
1ffkF	1	0.5	0.6	0.918	Contact Map
1tafA	2	0.569	0.6	0.918	Contact Map
1vq8H	1	0.5	0.6	0.918	Contact Map
2pa2A	1	0.5345	0.6	0.92	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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