DUF1501 - PFAM28P - GREMLIN Contacts

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DUF1501 - Protein of unknown function (DUF1501)

PFAM:	PF07394	Sequences: AKRVIFLFLSGGPSHLDTFDPKPDLPYYAGRPFPKFIQTGQSGIWISELLPHLAKLADDLALIRSMHTDLINHGPAAYVMNTGSPLPGRPSLGSWVSYGLGSENQNLPAFVVLPSPGGGPGGGARNWGSGFLGRAYQGVPLRSGGDPVLNLSPPAGVSLERQRRRLDLLAALNRLHLRRPGDPELEARIASYELAFRLLMQSSAPEAFDLSKEPAATRDLYGRDAPKTGSFGQQCLLARRLVERGVRFVQVYHGGWDTHGNLFGNHKRLLPELDQALAALLTDLKQRGLLDDTLVVWGGEFGRTPKINGNGGRDHWPRGFSMWLAGGGVKGGQVYGATDELGYNAVEDPVHVHDLHATILHLLGIDHERLTYRHQGRPFRLTDHGKVIKELL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_10
Length:	392 (387)
Sequences:	48096 (31159)
Seq/√Len:	1583.9
META:	0.932

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
38_Q	45_W	4.366	1.00
59_D	285_K	4.161	1.00
337_A	347_E	3.801	1.00
56_L	282_T	3.605	1.00
215_A	219_D	3.447	1.00
24_D	27_Y	3.093	1.00
258_T	262_L	3.005	1.00
28_Y	31_R	2.890	1.00
261_N	264_G	2.856	1.00
278_A	282_T	2.803	1.00
243_E	287_R	2.722	1.00
24_D	28_Y	2.633	1.00
52_H	275_Q	2.621	1.00
13_P	18_T	2.549	1.00
2_K	292_D	2.520	1.00
214_P	217_T	2.414	1.00
263_F	267_K	2.377	1.00
206_E	212_K	2.344	1.00
271_P	275_Q	2.272	1.00
220_L	282_T	2.267	1.00
318_R	344_N	2.266	1.00
298_G	322_M	2.228	1.00
55_K	282_T	2.206	1.00
52_H	55_K	2.187	1.00
242_V	249_V	2.182	1.00
3_R	242_V	2.179	1.00
44_I	62_L	2.175	1.00
319_G	338_T	2.175	1.00
9_L	297_W	2.142	1.00
13_P	299_G	2.115	1.00
335_Y	348_D	2.102	1.00
170_A	174_R	2.093	1.00
253_H	256_W	2.080	1.00
220_L	286_Q	2.079	1.00
56_L	281_L	2.077	1.00
253_H	272_E	2.068	1.00
40_G	58_D	2.062	1.00
5_I	280_L	2.059	1.00
61_A	333_Q	2.057	1.00
266_H	270_L	2.050	1.00
209_D	212_K	2.023	1.00
373_R	378_P	2.021	1.00
219_D	223_R	2.019	1.00
97_S	136_Y	2.010	1.00
337_A	346_V	1.999	1.00
35_K	48_E	1.951	1.00
294_L	329_V	1.949	1.00
57_A	60_L	1.920	1.00
215_A	218_R	1.915	1.00
350_V	388_I	1.892	1.00
273_L	297_W	1.887	1.00
285_K	290_L	1.844	1.00
289_L	292_D	1.841	1.00
330_K	333_Q	1.834	1.00
258_T	265_N	1.813	1.00
46_I	57_A	1.810	1.00
39_T	54_A	1.802	1.00
15_H	320_F	1.765	1.00
258_T	269_L	1.759	1.00
158_S	161_R	1.749	1.00
5_I	242_V	1.720	1.00
277_L	325_A	1.669	1.00
69_D	274_D	1.669	1.00
163_R	167_D	1.634	1.00
44_I	334_V	1.617	1.00
203_S	206_E	1.604	1.00
281_L	295_V	1.596	1.00
66_M	274_D	1.585	1.00
56_L	59_D	1.577	1.00
30_G	305_P	1.571	1.00
377_R	383_D	1.569	1.00
216_A	286_Q	1.568	1.00
264_G	268_R	1.558	1.00
97_S	109_A	1.557	1.00
218_R	223_R	1.546	1.00
167_D	170_A	1.546	1.00
68_T	72_N	1.538	1.00
69_D	72_N	1.533	1.00
282_T	286_Q	1.532	1.00
220_L	279_A	1.524	1.00
36_F	45_W	1.506	1.00
281_L	290_L	1.495	1.00
193_E	197_R	1.489	1.00
44_I	57_A	1.469	1.00
3_R	293_T	1.465	1.00
265_N	268_R	1.458	1.00
277_L	297_W	1.451	1.00
281_L	325_A	1.441	1.00
308_N	314_D	1.425	1.00
277_L	323_W	1.417	1.00
188_R	192_Y	1.400	1.00
288_G	291_D	1.397	1.00
231_F	235_C	1.395	1.00
3_R	292_D	1.393	1.00
64_R	334_V	1.391	1.00
21_P	36_F	1.385	1.00
267_K	271_P	1.385	1.00
117_G	120_P	1.380	1.00
67_H	349_P	1.378	1.00
53_L	60_L	1.374	1.00
26_P	29_A	1.372	1.00
41_Q	44_I	1.361	1.00
66_M	322_M	1.355	1.00
269_L	272_E	1.350	1.00
297_W	323_W	1.337	1.00
110_F	114_P	1.328	1.00
258_T	266_H	1.312	1.00
50_L	53_L	1.312	1.00
55_K	58_D	1.307	1.00
186_E	190_A	1.303	1.00
339_D	343_Y	1.302	1.00
219_D	224_D	1.294	1.00
41_Q	57_A	1.291	1.00
129_S	137_Q	1.287	1.00
290_L	327_G	1.280	1.00
61_A	331_G	1.280	1.00
68_T	71_I	1.276	1.00
40_G	55_K	1.273	1.00
290_L	293_T	1.268	1.00
345_A	349_P	1.257	1.00
84_S	89_R	1.246	1.00
236_L	239_R	1.246	1.00
10_S	252_Y	1.245	1.00
226_P	229_G	1.240	1.00
30_G	34_P	1.240	1.00
202_S	206_E	1.240	1.00
296_V	359_I	1.240	1.00
46_I	50_L	1.239	1.00
335_Y	350_V	1.238	1.00
277_L	295_V	1.225	1.00
261_N	265_N	1.220	1.00
224_D	229_G	1.218	1.00
324_L	329_V	1.208	1.00
354_D	385_G	1.195	1.00
295_V	325_A	1.194	1.00
21_P	45_W	1.193	1.00
53_L	277_L	1.192	1.00
275_Q	279_A	1.188	1.00
148_V	151_L	1.184	1.00
42_S	45_W	1.183	1.00
153_P	159_L	1.181	1.00
63_I	324_L	1.175	1.00
216_A	219_D	1.173	1.00
43_G	46_I	1.170	1.00
268_R	271_P	1.168	1.00
329_V	362_L	1.167	1.00
111_V	114_P	1.165	1.00
282_T	285_K	1.164	1.00
386_K	389_K	1.161	1.00
192_Y	195_A	1.154	1.00
188_R	191_S	1.153	1.00
231_F	234_Q	1.145	1.00
149_L	153_P	1.141	1.00
99_G	369_R	1.139	1.00
190_A	193_E	1.134	1.00
366_D	369_R	1.127	1.00
4_V	248_F	1.125	1.00
273_L	277_L	1.125	1.00
189_I	193_E	1.124	1.00
229_G	233_Q	1.122	1.00
70_L	75_P	1.121	1.00
25_L	29_A	1.120	1.00
217_T	220_L	1.119	1.00
239_R	242_V	1.118	1.00
172_L	175_L	1.117	1.00
73_H	76_A	1.115	1.00
307_I	310_N	1.113	1.00
211_S	218_R	1.111	1.00
171_A	174_R	1.109	1.00
294_L	328_G	1.108	1.00
75_P	281_L	1.100	1.00
116_P	119_G	1.097	1.00
361_H	389_K	1.095	1.00
261_N	311_G	1.095	1.00
368_E	386_K	1.094	1.00
108_P	114_P	1.087	1.00
284_L	293_T	1.081	1.00
6_F	298_G	1.075	1.00
166_L	169_L	1.071	1.00
111_V	115_S	1.067	1.00
61_A	329_V	1.065	1.00
193_E	196_F	1.062	1.00
26_P	35_K	1.062	1.00
18_T	50_L	1.061	1.00
189_I	192_Y	1.060	1.00
296_V	324_L	1.059	1.00
13_P	297_W	1.050	1.00
42_S	46_I	1.048	1.00
238_A	242_V	1.044	1.00
76_A	325_A	1.042	1.00
60_L	323_W	1.028	1.00
237_L	240_R	1.027	1.00
49_L	53_L	1.027	1.00
7_L	295_V	1.025	1.00
200_M	204_A	1.017	1.00
216_A	220_L	1.011	1.00
150_N	153_P	1.009	1.00
19_F	78_Y	1.004	1.00
116_P	120_P	1.004	1.00
6_F	296_V	1.001	1.00
319_G	345_A	0.993	1.00
166_L	170_A	0.992	1.00
57_A	62_L	0.991	1.00
92_L	359_I	0.988	1.00
62_L	321_S	0.985	1.00
27_Y	31_R	0.983	1.00
164_R	167_D	0.981	1.00
206_E	244_R	0.978	1.00
186_E	193_E	0.976	1.00
108_P	111_V	0.974	1.00
207_A	244_R	0.972	1.00
281_L	284_L	0.971	1.00
44_I	64_R	0.960	1.00
169_L	173_N	0.957	1.00
374_H	379_F	0.957	1.00
53_L	56_L	0.956	1.00
52_H	278_A	0.950	1.00
66_M	355_L	0.949	1.00
52_H	56_L	0.948	1.00
280_L	284_L	0.944	1.00
266_H	269_L	0.941	1.00
174_R	177_L	0.941	1.00
177_L	186_E	0.941	1.00
39_T	46_I	0.940	1.00
122_G	125_R	0.935	1.00
284_L	290_L	0.934	1.00
324_L	355_L	0.929	1.00
353_H	384_H	0.928	1.00
264_G	267_K	0.927	1.00
160_E	163_R	0.925	1.00
192_Y	196_F	0.923	1.00
221_Y	224_D	0.921	1.00
40_G	57_A	0.920	1.00
265_N	269_L	0.918	1.00
281_L	285_K	0.918	1.00
118_G	121_G	0.918	1.00
191_S	194_L	0.916	1.00
294_L	324_L	0.916	1.00
72_N	75_P	0.912	1.00
176_H	179_R	0.910	1.00
70_L	85_P	0.904	1.00
23_P	59_D	0.901	1.00
171_A	175_L	0.901	1.00
238_A	241_L	0.897	1.00
209_D	213_E	0.892	1.00
231_F	277_L	0.888	1.00
223_R	233_Q	0.887	1.00
39_T	42_S	0.887	1.00
215_A	223_R	0.884	1.00
21_P	64_R	0.884	1.00
191_S	195_A	0.883	1.00
221_Y	225_A	0.880	1.00
63_I	350_V	0.879	1.00
89_R	131_F	0.878	1.00
272_E	276_A	0.876	1.00
129_S	134_R	0.870	1.00
194_L	197_R	0.869	1.00
26_P	30_G	0.867	1.00
307_I	311_G	0.864	1.00
25_L	28_Y	0.863	1.00
35_K	39_T	0.861	1.00
163_R	166_L	0.861	1.00
149_L	152_S	0.858	1.00
77_A	81_N	0.850	1.00
253_H	269_L	0.849	1.00
9_L	273_L	0.844	1.00
218_R	233_Q	0.842	1.00
183_P	186_E	0.841	1.00
144_G	147_P	0.839	1.00
184_E	188_R	0.837	1.00
173_N	177_L	0.835	1.00
133_G	137_Q	0.832	1.00
76_A	80_M	0.831	1.00
13_P	266_H	0.829	1.00
153_P	156_G	0.827	1.00
356_H	359_I	0.823	1.00
204_A	208_F	0.823	1.00
224_D	228_T	0.821	1.00
120_P	123_G	0.821	1.00
48_E	51_P	0.819	1.00
76_A	81_N	0.819	1.00
222_G	225_A	0.819	1.00
235_C	251_V	0.818	1.00
108_P	112_V	0.818	1.00
14_S	258_T	0.818	1.00
47_S	50_L	0.814	1.00
93_G	106_N	0.812	1.00
262_L	266_H	0.811	1.00
290_L	295_V	0.810	1.00
95_W	107_L	0.808	1.00
202_S	205_P	0.807	1.00
92_L	356_H	0.806	1.00
46_I	49_L	0.806	1.00
190_A	194_L	0.803	1.00
162_Q	165_R	0.801	1.00
10_S	77_A	0.799	1.00
28_Y	341_L	0.797	1.00
329_V	333_Q	0.793	1.00
8_F	77_A	0.793	1.00
52_H	282_T	0.791	1.00
109_A	112_V	0.789	1.00
218_R	221_Y	0.788	1.00
240_R	244_R	0.788	1.00
172_L	176_H	0.786	1.00
63_I	66_M	0.784	1.00
56_L	60_L	0.781	1.00
268_R	272_E	0.781	1.00
165_R	168_L	0.780	1.00
67_H	351_H	0.780	1.00
16_L	342_G	0.778	1.00
70_L	76_A	0.776	1.00
15_H	18_T	0.775	1.00
46_I	53_L	0.773	1.00
108_P	113_L	0.771	1.00
253_H	273_L	0.770	1.00
110_F	115_S	0.769	1.00
44_I	47_S	0.769	1.00
159_L	163_R	0.768	1.00
263_F	266_H	0.768	1.00
18_T	270_L	0.767	1.00
110_F	113_L	0.766	1.00
165_R	169_L	0.764	1.00
173_N	176_H	0.763	1.00
80_M	320_F	0.763	1.00
227_K	230_S	0.763	1.00
39_T	44_I	0.762	1.00
175_L	178_R	0.760	1.00
379_F	383_D	0.756	1.00
50_L	54_A	0.754	1.00
161_R	165_R	0.753	1.00
107_L	111_V	0.752	1.00
277_L	281_L	0.751	1.00
214_P	221_Y	0.750	1.00
69_D	278_A	0.749	1.00
69_D	275_Q	0.748	1.00
236_L	240_R	0.745	1.00
223_R	229_G	0.743	1.00
218_R	225_A	0.742	1.00
143_S	146_D	0.742	1.00
153_P	161_R	0.741	1.00
215_A	221_Y	0.737	1.00
225_A	275_Q	0.736	1.00
232_G	251_V	0.735	1.00
236_L	241_L	0.734	1.00
206_E	209_D	0.733	1.00
112_V	115_S	0.732	1.00
291_D	327_G	0.729	1.00
68_T	79_V	0.728	1.00
23_P	26_P	0.728	1.00
19_F	62_L	0.724	1.00
322_M	355_L	0.722	1.00
119_G	123_G	0.722	1.00
107_L	110_F	0.721	1.00
96_V	363_L	0.719	1.00
121_G	125_R	0.719	1.00
106_N	203_S	0.717	1.00
211_S	215_A	0.715	1.00
219_D	222_G	0.715	1.00
74_G	77_A	0.714	1.00
372_Y	376_G	0.713	1.00
109_A	113_L	0.712	1.00
129_S	133_G	0.712	1.00
149_L	154_P	0.711	1.00
66_M	320_F	0.710	1.00
18_T	266_H	0.709	1.00
65_S	348_D	0.708	1.00
93_G	110_F	0.708	1.00
15_H	321_S	0.708	1.00
4_V	363_L	0.704	1.00
210_L	218_R	0.703	1.00
201_Q	205_P	0.703	1.00
65_S	267_K	0.702	1.00
377_R	385_G	0.700	1.00
98_Y	102_S	0.699	1.00
38_Q	42_S	0.699	1.00
207_A	210_L	0.698	1.00
218_R	222_G	0.697	1.00
119_G	122_G	0.697	1.00
152_S	155_A	0.697	1.00
17_D	20_D	0.694	1.00
91_S	94_S	0.692	1.00
50_L	270_L	0.690	1.00
27_Y	30_G	0.689	1.00
182_D	186_E	0.688	1.00
233_Q	236_L	0.687	1.00
54_A	57_A	0.686	1.00
169_L	172_L	0.685	1.00
373_R	379_F	0.684	1.00
232_G	236_L	0.683	1.00
4_V	296_V	0.679	1.00
211_S	214_P	0.679	1.00
37_I	54_A	0.673	1.00
180_P	185_L	0.672	1.00
134_R	187_A	0.669	1.00
201_Q	204_A	0.669	1.00
234_Q	238_A	0.669	1.00
237_L	241_L	0.667	1.00
74_G	80_M	0.663	1.00
67_H	345_A	0.663	1.00
236_L	242_V	0.662	1.00
210_L	213_E	0.661	1.00
213_E	221_Y	0.660	1.00
162_Q	166_L	0.658	1.00
232_G	235_C	0.655	1.00
351_H	354_D	0.651	1.00
153_P	158_S	0.651	1.00
111_V	246_V	0.648	1.00
59_D	282_T	0.647	1.00
167_D	171_A	0.645	1.00
184_E	187_A	0.645	1.00
105_Q	109_A	0.644	1.00
205_P	209_D	0.644	1.00
117_G	123_G	0.643	1.00
21_P	47_S	0.643	1.00
231_F	276_A	0.641	1.00
346_V	349_P	0.641	1.00
65_S	271_P	0.640	1.00
48_E	52_H	0.639	1.00
267_K	270_L	0.638	1.00
92_L	96_V	0.638	1.00
189_I	196_F	0.635	1.00
100_L	103_E	0.634	1.00
316_W	344_N	0.634	1.00
45_W	64_R	0.634	1.00
151_L	154_P	0.633	1.00
46_I	62_L	0.633	1.00
21_P	26_P	0.632	1.00
185_L	189_I	0.631	1.00
355_L	359_I	0.628	1.00
45_W	48_E	0.628	1.00
188_R	195_A	0.628	1.00
102_S	105_Q	0.628	1.00
117_G	121_G	0.625	1.00
306_K	343_Y	0.623	1.00
160_E	165_R	0.621	1.00
344_N	349_P	0.620	1.00
79_V	85_P	0.620	1.00
150_N	154_P	0.618	1.00
47_S	51_P	0.617	1.00
19_F	321_S	0.617	1.00
25_L	30_G	0.616	1.00
48_E	267_K	0.615	1.00
242_V	289_L	0.615	1.00
79_V	324_L	0.612	1.00
301_F	317_P	0.612	1.00
338_T	346_V	0.611	1.00
38_Q	41_Q	0.611	1.00
213_E	218_R	0.609	1.00
121_G	124_A	0.607	1.00
148_V	153_P	0.607	1.00
107_L	113_L	0.607	1.00
208_F	214_P	0.607	1.00
214_P	218_R	0.606	1.00
71_I	317_P	0.604	1.00
260_G	310_N	0.604	1.00
370_L	380_R	0.604	1.00
340_E	346_V	0.603	1.00
96_V	100_L	0.603	1.00
31_R	34_P	0.602	1.00
308_N	311_G	0.601	1.00
9_L	253_H	0.599	1.00
353_H	383_D	0.599	1.00
7_L	297_W	0.598	1.00
157_V	161_R	0.597	1.00
119_G	124_A	0.597	1.00
160_E	164_R	0.594	1.00
78_Y	82_T	0.594	1.00
183_P	187_A	0.593	1.00
123_G	126_N	0.591	1.00
281_L	323_W	0.589	1.00
5_I	284_L	0.589	1.00
243_E	289_L	0.587	1.00
204_A	207_A	0.586	1.00
367_H	382_T	0.585	1.00
176_H	180_P	0.585	1.00
40_G	44_I	0.585	1.00
95_W	99_G	0.585	1.00
149_L	155_A	0.584	1.00
233_Q	237_L	0.583	1.00
368_E	380_R	0.581	1.00
26_P	342_G	0.580	1.00
77_A	335_Y	0.580	1.00
372_Y	379_F	0.579	1.00
97_S	101_G	0.578	1.00
106_N	109_A	0.577	1.00
81_N	250_Q	0.576	1.00
50_L	273_L	0.576	1.00
274_D	278_A	0.575	1.00
166_L	196_F	0.574	1.00
316_W	319_G	0.574	1.00
49_L	267_K	0.574	1.00
356_H	360_L	0.573	1.00
294_L	359_I	0.572	1.00
100_L	247_R	0.572	1.00
256_W	273_L	0.568	1.00
213_E	217_T	0.566	1.00
155_A	158_S	0.566	1.00
177_L	180_P	0.565	1.00
210_L	214_P	0.564	1.00
316_W	345_A	0.563	1.00
168_L	172_L	0.561	1.00
235_C	276_A	0.560	1.00
69_D	85_P	0.559	1.00
181_G	184_E	0.558	1.00
105_Q	108_P	0.557	1.00
80_M	334_V	0.556	1.00
235_C	238_A	0.556	1.00
154_P	157_V	0.556	1.00
47_S	52_H	0.556	1.00
170_A	173_N	0.555	1.00
284_L	287_R	0.555	1.00
72_N	278_A	0.553	1.00
39_T	45_W	0.553	1.00
223_R	227_K	0.551	1.00
180_P	183_P	0.550	1.00
116_P	121_G	0.550	1.00
263_F	311_G	0.549	1.00
123_G	127_W	0.549	1.00
19_F	53_L	0.548	1.00
240_R	243_E	0.548	1.00
284_L	289_L	0.545	1.00
150_N	156_G	0.544	1.00
352_V	355_L	0.543	1.00
74_G	78_Y	0.541	1.00
234_Q	251_V	0.540	1.00
285_K	331_G	0.539	1.00
262_L	267_K	0.539	1.00
199_L	204_A	0.538	1.00
235_C	239_R	0.536	1.00
326_G	329_V	0.536	1.00
290_L	325_A	0.536	1.00
28_Y	32_P	0.536	1.00
203_S	207_A	0.535	1.00
65_S	345_A	0.535	1.00
34_P	42_S	0.534	1.00
3_R	289_L	0.532	1.00
56_L	285_K	0.532	1.00
156_G	159_L	0.531	1.00
185_L	188_R	0.528	1.00
76_A	82_T	0.528	1.00
92_L	248_F	0.527	1.00
56_L	278_A	0.527	1.00
210_L	217_T	0.526	1.00
153_P	162_Q	0.525	1.00
185_L	192_Y	0.524	1.00
81_N	252_Y	0.523	1.00
279_A	283_D	0.522	1.00
109_A	114_P	0.522	1.00
199_L	203_S	0.521	1.00
148_V	152_S	0.520	1.00
89_R	379_F	0.519	1.00
46_I	54_A	0.519	1.00
143_S	147_P	0.519	1.00
294_L	362_L	0.518	1.00
19_F	323_W	0.518	1.00
231_F	236_L	0.517	1.00
182_D	185_L	0.517	1.00
380_R	383_D	0.517	1.00
188_R	193_E	0.516	1.00
221_Y	283_D	0.515	1.00
207_A	211_S	0.515	1.00
187_A	190_A	0.515	1.00
96_V	248_F	0.514	1.00
53_L	323_W	0.513	1.00
164_R	168_L	0.513	1.00
210_L	221_Y	0.512	1.00
77_A	80_M	0.509	1.00
237_L	242_V	0.508	1.00
157_V	160_E	0.506	1.00
49_L	52_H	0.505	1.00
134_R	137_Q	0.504	1.00
260_G	265_N	0.504	1.00
281_L	327_G	0.503	1.00
37_I	48_E	0.502	1.00
283_D	287_R	0.502	1.00
187_A	191_S	0.502	1.00
156_G	161_R	0.501	1.00
161_R	164_R	0.501	1.00
174_R	178_R	0.500	1.00
3_R	249_V	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3nkqA	1	0.6556	90.9	0.933	Contact Map
4lr2A	1	0.6862	89.4	0.935	Contact Map
2gsoA	1	0.6837	77.2	0.944	Contact Map
3b5qA	1	0.648	73.2	0.946	Contact Map
1p49A	3	0.6173	64.6	0.949	Contact Map
1aukA	3	0.7398	62.5	0.95	Contact Map
2qzuA	2	0.6327	51.8	0.953	Contact Map
4upkA	3	0.6735	51.4	0.953	Contact Map
1fsuA	1	0.6403	47.2	0.954	Contact Map
4kavA	1	0.6735	41.7	0.956	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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