FlbT - PFAM28P - GREMLIN Contacts

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FlbT - Flagellar protein FlbT

PFAM:	PF07378	Sequences: LKLELKPGERIIINGAVITNGDRRTRLLIENDAPILREKDILTPEEADTPARRIYFAVQLMYLDPADPEEYHDLYFRLVRELLQAFAAPSARALLDEISNHVLAGRYYKALKAARKLIPYEEELL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_10
Length:	125 (125)
Sequences:	4203 (2453)
Seq/√Len:	219.4
META:	0.891

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
48_D	52_R	4.921	1.00
51_A	82_L	3.336	1.00
54_I	82_L	2.880	1.00
52_R	122_E	2.759	1.00
106_R	109_K	2.577	1.00
19_T	30_E	2.369	1.00
101_H	106_R	2.163	1.00
57_A	78_L	2.160	1.00
78_L	81_E	2.155	1.00
97_E	113_A	2.151	1.00
100_N	104_A	2.073	1.00
99_S	103_L	2.038	1.00
83_L	96_D	1.971	1.00
64_D	67_D	1.849	1.00
72_H	76_F	1.802	1.00
82_L	91_A	1.779	1.00
4_E	24_R	1.727	1.00
76_F	99_S	1.696	1.00
43_T	46_E	1.685	1.00
102_V	110_A	1.636	1.00
101_H	113_A	1.604	1.00
101_H	109_K	1.591	1.00
73_D	77_R	1.586	1.00
91_A	120_Y	1.574	1.00
50_P	53_R	1.566	1.00
13_I	18_I	1.560	1.00
14_N	34_P	1.550	1.00
77_R	81_E	1.542	1.00
29_I	35_I	1.504	1.00
53_R	81_E	1.494	1.00
73_D	76_F	1.474	1.00
75_Y	102_V	1.404	1.00
67_D	70_E	1.404	1.00
98_I	114_A	1.398	1.00
113_A	116_K	1.367	1.00
70_E	73_D	1.361	1.00
65_P	68_P	1.352	1.00
13_I	29_I	1.351	1.00
64_D	71_Y	1.351	1.00
61_M	75_Y	1.327	1.00
19_T	28_L	1.310	1.00
75_Y	99_S	1.305	1.00
51_A	91_A	1.295	1.00
16_A	33_A	1.274	1.00
44_P	56_F	1.257	1.00
76_F	103_L	1.255	1.00
21_G	25_T	1.239	1.00
75_Y	79_V	1.202	1.00
52_R	118_I	1.195	1.00
88_A	91_A	1.158	1.00
54_I	78_L	1.152	1.00
18_I	27_L	1.148	1.00
29_I	33_A	1.148	1.00
83_L	99_S	1.119	1.00
74_L	78_L	1.115	1.00
12_I	63_L	1.109	1.00
47_A	53_R	1.096	1.00
4_E	26_R	1.095	1.00
69_E	73_D	1.094	1.00
5_L	9_E	1.085	1.00
87_A	90_S	1.083	1.00
68_P	72_H	1.079	1.00
92_R	96_D	1.071	1.00
94_L	97_E	1.065	1.00
93_A	97_E	1.051	1.00
119_P	122_E	1.047	1.00
9_E	38_E	1.026	1.00
98_I	117_L	1.021	1.00
2_K	26_R	1.011	1.00
118_I	122_E	0.998	1.00
91_A	94_L	0.972	1.00
120_Y	124_L	0.961	1.00
51_A	118_I	0.953	1.00
58_V	114_A	0.949	1.00
10_R	17_V	0.948	1.00
96_D	100_N	0.945	1.00
58_V	110_A	0.944	1.00
16_A	31_N	0.940	1.00
42_L	46_E	0.926	0.99
69_E	72_H	0.926	0.99
54_I	79_V	0.921	0.99
37_R	40_D	0.917	0.99
88_A	120_Y	0.906	0.99
71_Y	74_L	0.901	0.99
40_D	115_R	0.899	0.99
115_R	119_P	0.897	0.99
47_A	52_R	0.884	0.99
90_S	120_Y	0.875	0.99
68_P	107_Y	0.862	0.99
59_Q	114_A	0.858	0.99
64_D	68_P	0.856	0.99
42_L	47_A	0.849	0.99
8_G	22_D	0.843	0.99
14_N	33_A	0.841	0.99
116_K	119_P	0.831	0.99
26_R	35_I	0.821	0.99
80_R	86_F	0.818	0.99
42_L	55_Y	0.803	0.99
82_L	94_L	0.795	0.98
54_I	95_L	0.772	0.98
58_V	107_Y	0.769	0.98
82_L	95_L	0.765	0.98
97_E	116_K	0.745	0.98
61_M	71_Y	0.745	0.98
79_V	95_L	0.744	0.98
57_A	74_L	0.742	0.98
58_V	75_Y	0.728	0.97
40_D	109_K	0.727	0.97
86_F	91_A	0.723	0.97
44_P	57_A	0.716	0.97
83_L	95_L	0.711	0.97
59_Q	112_K	0.708	0.97
90_S	123_E	0.702	0.97
10_R	19_T	0.688	0.96
84_Q	89_P	0.670	0.96
34_P	61_M	0.668	0.95
97_E	100_N	0.663	0.95
19_T	23_R	0.653	0.95
93_A	104_A	0.651	0.95
100_N	103_L	0.648	0.95
39_K	47_A	0.644	0.94
8_G	13_I	0.643	0.94
82_L	88_A	0.641	0.94
72_H	105_G	0.641	0.94
74_L	77_R	0.636	0.94
84_Q	87_A	0.633	0.94
120_Y	123_E	0.630	0.94
21_G	27_L	0.629	0.94
33_A	109_K	0.627	0.94
118_I	124_L	0.625	0.94
48_D	122_E	0.624	0.94
15_G	66_A	0.624	0.94
58_V	102_V	0.613	0.93
114_A	118_I	0.611	0.93
51_A	114_A	0.608	0.93
80_R	84_Q	0.606	0.92
58_V	116_K	0.606	0.92
55_Y	111_L	0.595	0.92
42_L	49_T	0.590	0.91
11_I	15_G	0.588	0.91
86_F	92_R	0.586	0.91
16_A	19_T	0.585	0.91
20_N	27_L	0.583	0.91
11_I	27_L	0.575	0.90
17_V	31_N	0.570	0.90
97_E	101_H	0.568	0.90
2_K	28_L	0.568	0.90
10_R	60_L	0.567	0.90
21_G	28_L	0.562	0.89
44_P	71_Y	0.561	0.89
101_H	104_A	0.561	0.89
4_E	7_P	0.551	0.88
76_F	96_D	0.549	0.88
56_F	104_A	0.549	0.88
93_A	96_D	0.545	0.88
75_Y	83_L	0.541	0.88
57_A	71_Y	0.538	0.87
119_P	123_E	0.535	0.87
6_K	34_P	0.535	0.87
32_D	66_A	0.534	0.87
8_G	16_A	0.532	0.87
20_N	40_D	0.531	0.87
32_D	65_P	0.531	0.87
67_D	71_Y	0.528	0.86
76_F	80_R	0.528	0.86
4_E	39_K	0.527	0.86
58_V	61_M	0.526	0.86
69_E	76_F	0.526	0.86
20_N	37_R	0.522	0.86
19_T	41_I	0.522	0.86
72_H	107_Y	0.520	0.85
34_P	62_Y	0.520	0.85
12_I	111_L	0.515	0.85
8_G	21_G	0.514	0.85
5_L	24_R	0.514	0.85
4_E	9_E	0.513	0.85
70_E	74_L	0.513	0.85
13_I	16_A	0.513	0.85
94_L	113_A	0.512	0.85
72_H	103_L	0.510	0.84
61_M	72_H	0.510	0.84
60_L	64_D	0.508	0.84
21_G	26_R	0.507	0.84
1_L	5_L	0.506	0.84
82_L	86_F	0.506	0.84
8_G	23_R	0.502	0.83
94_L	116_K	0.502	0.83
26_R	31_N	0.500	0.83

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2wpvA	1	0.296	39	0.906	Contact Map
1vpzA	2	0.384	32.3	0.91	Contact Map
4krwA	2	0.328	27.5	0.913	Contact Map
2btiA	2	0.4	25.8	0.914	Contact Map
1t3oA	1	0.536	24.8	0.915	Contact Map
1ltlA	4	0.32	21.9	0.917	Contact Map
2jppA	2	0.336	21.8	0.917	Contact Map
2wnvB	1	0.312	17.9	0.92	Contact Map
4m2aA	1	0.2	16.2	0.921	Contact Map
1rj8A	3	0.32	16.1	0.922	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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