GREMLIN Database
Flagellin_IN - Flagellin hook IN motif
PFAM: PF07196 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 56 (53)
Sequences: 23993 (18002)
Seq/√Len: 2472.7
META: 0.903

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
21_D29_A2.7931.00
33_A36_N2.6621.00
27_A43_I2.3211.00
21_D25_D1.9841.00
45_N48_G1.9411.00
40_T55_T1.7921.00
22_T25_D1.7521.00
18_A21_D1.7071.00
24_A43_I1.6941.00
24_A28_D1.6791.00
46_D49_R1.5231.00
43_I48_G1.4711.00
24_A27_A1.4661.00
44_V47_G1.4501.00
5_N9_G1.3721.00
44_V49_R1.3711.00
40_T53_T1.3491.00
3_T12_T1.3411.00
44_V51_V1.3071.00
42_S53_T1.2791.00
18_A29_A1.1811.00
26_L30_I1.1501.00
34_S37_T1.1391.00
28_D32_A1.1031.00
42_S51_V1.0851.00
17_V26_L1.0491.00
25_D29_A1.0341.00
6_G10_S1.0321.00
5_N8_G1.0301.00
30_I52_L1.0121.00
6_G9_G0.9851.00
7_G10_S0.9441.00
43_I47_G0.9391.00
23_L43_I0.9311.00
44_V48_G0.9291.00
23_L26_L0.9171.00
39_V52_L0.9121.00
29_A32_A0.9011.00
27_A31_N0.8961.00
33_A37_T0.8651.00
6_G11_A0.8301.00
6_G37_T0.8221.00
28_D34_S0.7991.00
41_A52_L0.7851.00
3_T10_S0.7781.00
5_N10_S0.7681.00
9_G12_T0.7561.00
34_S40_T0.7431.00
8_G11_A0.7331.00
27_A50_L0.7231.00
14_T17_V0.7181.00
43_I46_D0.6881.00
48_G51_V0.6841.00
5_N11_A0.6781.00
23_L27_A0.6651.00
23_L50_L0.6641.00
2_L5_N0.6641.00
3_T6_G0.6541.00
3_T14_T0.6491.00
17_V22_T0.6391.00
4_I39_V0.6211.00
7_G11_A0.6121.00
32_A36_N0.6051.00
30_I39_V0.6011.00
16_T20_G0.5921.00
3_T8_G0.5921.00
17_V20_G0.5831.00
27_A42_S0.5831.00
16_T19_A0.5731.00
29_A33_A0.5701.00
17_V29_A0.5641.00
3_T11_A0.5641.00
27_A41_A0.5631.00
30_I41_A0.5471.00
37_T52_L0.5281.00
38_G55_T0.5271.00
25_D28_D0.5271.00
15_I33_A0.5131.00
18_A23_L0.5061.00
15_I22_T0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3k8wA 1 0.9464 28.2 0.712 Contact Map
4nx9A 1 0.9464 16.8 0.741 Contact Map
4fxqA 1 1 13.6 0.751 Contact Map
3tixA 1 0.8393 6.7 0.783 Contact Map
1y8xB 1 0.8214 6.3 0.787 Contact Map
1q1oA 1 1 5.9 0.789 Contact Map
1se9A 1 0.9643 5.5 0.791 Contact Map
1io1A 1 0.9464 5.5 0.791 Contact Map
3v7oA 2 0.875 5.5 0.791 Contact Map
2ekeC 1 0.8393 4.8 0.797 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0044 seconds.