GREMLIN Database
Phage_P2_GpU - Phage P2 GpU
PFAM: PF06995 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 120 (119)
Sequences: 3549 (2820)
Seq/√Len: 258.5
META: 0.734

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
25_E116_K2.4881.00
91_T116_K2.4841.00
35_L89_V2.2881.00
21_A69_A2.2391.00
68_M75_L2.0951.00
92_S114_T2.0481.00
14_E48_S2.0061.00
28_R34_A1.9961.00
16_Q94_S1.9871.00
37_F72_G1.9441.00
18_S94_S1.9221.00
20_S41_G1.9141.00
50_V110_E1.9061.00
17_R95_E1.9031.00
19_T66_R1.8741.00
17_R43_D1.8671.00
44_T116_K1.7971.00
18_S92_S1.7811.00
101_D105_T1.7061.00
50_V108_K1.7041.00
79_I85_L1.6971.00
35_L116_K1.6781.00
49_G113_L1.6741.00
46_T114_T1.6201.00
52_Y108_K1.6111.00
35_L42_L1.6041.00
32_K117_E1.5951.00
48_S112_T1.5881.00
94_S112_T1.5641.00
62_L109_I1.5631.00
49_G111_F1.5571.00
20_S92_S1.5101.00
19_T43_D1.4471.00
25_E42_L1.4221.00
106_P109_I1.4121.00
23_W89_V1.3961.00
16_Q96_T1.3901.00
66_R95_E1.3801.00
22_R41_G1.3721.00
24_A38_T1.3481.00
32_K40_P1.3351.00
98_S110_E1.3331.00
69_A90_I1.3101.00
26_H36_Q1.3091.00
76_P87_R1.2241.00
25_E35_L1.2181.00
19_T69_A1.2181.00
25_E41_G1.1831.00
18_S44_T1.1821.00
44_T114_T1.1711.00
79_I83_R1.1121.00
21_A37_F1.0951.00
46_T112_T1.0741.00
40_P70_D1.0711.00
89_V116_K1.0631.00
47_L115_L1.0581.00
27_E33_P1.0291.00
22_R27_E1.0211.00
35_L91_T1.0141.00
91_T114_T1.0101.00
48_S110_E0.9981.00
96_T112_T0.9961.00
12_F15_L0.9931.00
22_R39_G0.9871.00
65_L93_I0.9851.00
17_R66_R0.9721.00
45_I88_W0.9611.00
37_F40_P0.9521.00
71_S75_L0.9441.00
62_L95_E0.9371.00
14_E96_T0.9361.00
51_L111_F0.9271.00
43_D70_D0.9251.00
21_A70_D0.9231.00
28_R31_G0.9151.00
98_S108_K0.9081.00
61_E64_K0.9011.00
3_F68_M0.8971.00
57_G60_A0.8901.00
97_Q106_P0.8891.00
63_D67_A0.8741.00
97_Q100_F0.8641.00
25_E33_P0.8621.00
8_S11_T0.8621.00
20_S91_T0.8510.99
63_D66_R0.8470.99
23_W35_L0.8370.99
65_L111_F0.8350.99
69_A93_I0.8340.99
59_L106_P0.8330.99
93_I113_L0.8280.99
66_R70_D0.8230.99
22_R38_T0.8110.99
76_P84_V0.8070.99
44_T91_T0.8020.99
25_E91_T0.8000.99
15_L45_I0.7920.99
74_P89_V0.7820.99
53_P57_G0.7750.99
59_L105_T0.7740.99
16_Q46_T0.7690.99
48_S96_T0.7670.99
17_R45_I0.7660.99
32_K70_D0.7580.99
42_L117_E0.7560.99
22_R33_P0.7530.99
63_D83_R0.7350.98
61_E65_L0.7340.98
59_L97_Q0.7330.98
2_D68_M0.7280.98
10_L51_L0.7260.98
68_M71_S0.7220.98
21_A93_I0.7170.98
15_L97_Q0.7160.98
47_L113_L0.7110.98
52_Y58_P0.7110.98
96_T110_E0.7100.98
67_A71_S0.7090.98
51_L61_E0.7070.98
3_F65_L0.7020.98
12_F100_F0.7000.98
100_F106_P0.6920.98
65_L90_I0.6910.98
90_I93_I0.6800.97
83_R87_R0.6790.97
82_G86_G0.6740.97
56_V61_E0.6730.97
10_L61_E0.6700.97
80_G104_G0.6680.97
43_D66_R0.6680.97
65_L68_M0.6600.97
54_E107_R0.6590.97
6_E9_T0.6550.97
59_L63_D0.6510.97
66_R93_I0.6490.97
25_E89_V0.6400.96
62_L111_F0.6320.96
14_E98_S0.6300.96
32_K119_D0.6280.96
60_A63_D0.6270.96
35_L118_Y0.6260.96
68_M74_P0.6210.96
64_K67_A0.6110.95
101_D107_R0.6100.95
24_A35_L0.6100.95
23_W118_Y0.6080.95
32_K42_L0.6070.95
7_V11_T0.6050.95
53_P107_R0.6010.95
29_I36_Q0.6010.95
78_V84_V0.5950.95
19_T70_D0.5840.94
74_P87_R0.5840.94
97_Q109_I0.5770.94
81_T105_T0.5760.94
60_A64_K0.5690.93
58_P109_I0.5670.93
40_P72_G0.5650.93
42_L89_V0.5640.93
12_F47_L0.5640.93
74_P118_Y0.5610.93
90_I115_L0.5590.93
62_L106_P0.5580.93
21_A40_P0.5430.92
82_G85_L0.5420.91
21_A36_Q0.5410.91
99_Y108_K0.5400.91
24_A36_Q0.5340.91
16_Q114_T0.5330.91
23_W74_P0.5280.90
13_Q50_V0.5260.90
53_P58_P0.5220.90
37_F69_A0.5190.90
19_T93_I0.5170.89
51_L65_L0.5140.89
26_H34_A0.5140.89
3_F10_L0.5090.89
88_W115_L0.5000.88
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2xwxA 2 0.8917 7.6 0.915 Contact Map
3ossC 1 0.5167 6.1 0.919 Contact Map
2pq0A 1 0.6833 5.8 0.919 Contact Map
2lnvA 1 0.7583 5.5 0.921 Contact Map
2zuvA 2 0.85 4.9 0.922 Contact Map
2zosA 1 0.675 4.6 0.923 Contact Map
1v54M 1 0.3583 4.3 0.924 Contact Map
3zx4A 2 0.6333 4.1 0.925 Contact Map
4csu9 1 0.9583 4 0.925 Contact Map
4divS 3 0.9083 4 0.925 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0053 seconds.