GREMLIN Database
P2_Phage_GpR - P2 phage tail completion protein R (GpR)
PFAM: PF06891 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 131 (130)
Sequences: 1170 (881)
Seq/√Len: 77.2
META: 0.468

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
64_L104_L4.5351.00
98_D101_T3.9571.00
4_P50_L3.8911.00
9_A13_A3.1431.00
30_D51_N2.9561.00
51_N105_S2.9421.00
35_V47_R2.8651.00
65_M106_I2.6141.00
49_T107_T2.5911.00
62_D128_H2.5431.00
53_I105_S2.4111.00
54_I64_L2.3831.00
68_L106_I2.2861.00
34_I65_M2.2791.00
10_A14_A1.9921.00
26_L55_T1.9061.00
24_R56_D1.8881.00
115_I129_K1.8211.00
118_E129_K1.7641.00
31_N49_T1.7371.00
44_F66_V1.7121.00
58_A101_T1.7111.00
45_E113_R1.6571.00
4_P29_I1.6551.00
119_D125_T1.6471.00
46_Y92_F1.6131.00
59_G63_L1.5931.00
46_Y65_M1.4660.99
72_L79_L1.4570.99
2_K60_D1.4330.99
119_D124_I1.4330.99
44_F114_V1.4290.99
96_I102_A1.4030.99
72_L90_I1.3940.99
61_P65_M1.3910.99
97_L101_T1.3790.99
76_Q79_L1.3680.99
83_P86_R1.3660.98
49_T109_P1.3580.98
119_D123_G1.3570.98
33_R109_P1.3070.98
76_Q110_L1.2660.98
3_K112_E1.2620.97
26_L53_I1.2220.97
36_A80_L1.2180.97
97_L103_D1.2170.97
2_K128_H1.2090.97
6_S75_N1.1970.97
79_L109_P1.1850.96
28_F53_I1.1810.96
79_L89_G1.1590.96
14_A67_P1.1030.94
48_Y112_E1.0940.94
46_Y62_D1.0910.94
46_Y67_P1.0850.94
93_E105_S1.0840.94
33_R47_R1.0630.93
68_L90_I1.0530.93
47_R111_T1.0400.93
75_N110_L1.0240.92
94_A104_L1.0160.92
8_R25_L1.0010.91
47_R109_P0.9980.91
10_A15_V0.9930.91
63_L123_G0.9700.90
5_Q9_A0.9690.90
32_G46_Y0.9150.87
117_K127_T0.9080.86
82_N85_K0.9060.86
58_A102_A0.9060.86
35_V86_R0.9010.86
91_T109_P0.8960.86
91_T107_T0.8810.85
54_I104_L0.8720.84
56_D101_T0.8570.83
30_D105_S0.8530.83
15_V67_P0.8450.82
84_D87_L0.8320.81
27_V50_L0.8250.81
85_K88_D0.8230.80
10_A13_A0.8220.80
63_L67_P0.8200.80
41_S116_V0.8150.80
18_L71_W0.8060.79
33_R52_L0.8050.79
61_P102_A0.8040.79
6_S10_A0.7980.78
7_L10_A0.7910.78
38_G81_A0.7890.78
72_L80_L0.7870.77
54_I60_D0.7820.77
32_G92_F0.7780.77
58_A70_A0.7770.77
70_A124_I0.7740.76
10_A67_P0.7710.76
118_E122_G0.7660.75
6_S71_W0.7650.75
57_F94_A0.7370.73
7_L71_W0.7330.72
44_F69_L0.7180.71
127_T130_P0.7120.70
33_R91_T0.7110.70
34_I120_P0.7110.70
70_A74_E0.7110.70
28_F55_T0.7080.70
118_E124_I0.7030.69
66_V126_V0.7020.69
48_Y104_L0.7000.69
83_P87_L0.6990.69
65_M92_F0.6910.68
78_D108_L0.6890.68
46_Y114_V0.6850.67
3_K111_T0.6790.66
68_L107_T0.6770.66
18_L54_I0.6710.65
87_L90_I0.6690.65
8_R18_L0.6690.65
21_N24_R0.6680.65
9_A12_T0.6670.65
87_L100_D0.6660.65
21_N27_V0.6620.64
38_G73_R0.6570.64
4_P27_V0.6480.63
3_K76_Q0.6410.62
32_G43_S0.6410.62
28_F103_D0.6380.62
2_K75_N0.6370.61
73_R81_A0.6270.60
117_K129_K0.6250.60
25_L111_T0.6200.59
21_N29_I0.6130.59
39_A73_R0.6130.59
118_E121_D0.6120.58
22_P67_P0.6090.58
11_L72_L0.6080.58
30_D92_F0.6020.57
31_N91_T0.6010.57
15_V97_L0.6000.57
50_L110_L0.6000.57
36_A86_R0.5990.57
94_A119_D0.5990.57
51_N107_T0.5860.55
66_V86_R0.5860.55
52_L81_A0.5840.55
72_L89_G0.5820.55
56_D103_D0.5810.55
43_S115_I0.5760.54
116_V126_V0.5720.53
17_E20_R0.5690.53
82_N86_R0.5680.53
43_S124_I0.5670.53
53_I103_D0.5650.53
118_E123_G0.5600.52
28_F52_L0.5590.52
37_T45_E0.5560.51
61_P124_I0.5560.51
50_L77_P0.5550.51
48_Y64_L0.5520.51
53_I93_E0.5500.51
16_P20_R0.5490.50
81_A85_K0.5480.50
68_L92_F0.5440.50
33_R87_L0.5430.50
63_L74_E0.5400.49
45_E111_T0.5380.49
119_D127_T0.5370.49
95_D126_V0.5370.49
43_S66_V0.5320.48
121_D127_T0.5300.48
24_R69_L0.5290.48
45_E76_Q0.5280.48
50_L80_L0.5260.48
72_L88_D0.5250.47
11_L108_L0.5230.47
64_L69_L0.5220.47
57_F65_M0.5210.47
47_R126_V0.5190.47
50_L76_Q0.5180.47
117_K124_I0.5160.46
45_E78_D0.5140.46
68_L72_L0.5140.46
83_P109_P0.5130.46
31_N52_L0.5130.46
55_T97_L0.5110.46
30_D95_D0.5110.46
17_E59_G0.5100.46
63_L66_V0.5090.45
41_S115_I0.5080.45
47_R51_N0.5080.45
50_L108_L0.5060.45
36_A69_L0.5050.45
32_G77_P0.5030.45
67_P113_R0.5020.45
34_I99_N0.5000.44
42_L70_A0.5000.44
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1yfnA 2 0.7023 31.6 0.908 Contact Map
1ou8A 2 0.6794 12.9 0.923 Contact Map
4miwA 1 0.3893 6.8 0.933 Contact Map
3l6iA 2 0.2901 6.7 0.933 Contact Map
2y9yB 1 0.3511 5.7 0.935 Contact Map
3nr7A 2 0.2137 5.3 0.936 Contact Map
4oh8B 1 0.1298 3.9 0.94 Contact Map
2xvlA 1 0.7557 3.8 0.94 Contact Map
3fm3A 1 0.5038 3.6 0.941 Contact Map
4ydzA 4 0.458 3.6 0.941 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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