GREMLIN Database
Phage_Gp15 - Bacteriophage Gp15 protein
PFAM: PF06854 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 170 (166)
Sequences: 1829 (1646)
Seq/√Len: 127.7
META: 0.86

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
113_D124_K4.6601.00
109_V133_P4.2681.00
101_Y141_I3.2801.00
10_E13_G2.4771.00
138_F142_I2.4471.00
71_C126_L2.3801.00
93_Y138_F2.3731.00
20_T119_Y2.2831.00
110_Y128_L2.2501.00
108_Q136_T2.1941.00
107_L124_K2.1751.00
64_K67_W2.1121.00
92_L146_S2.1111.00
116_E124_K2.0561.00
30_E96_E2.0431.00
10_E15_E2.0001.00
25_V50_L1.9861.00
137_K140_K1.9851.00
8_S15_E1.9751.00
12_D57_D1.9681.00
160_F164_L1.9621.00
60_E64_K1.8371.00
157_E160_F1.8021.00
129_F138_F1.7991.00
25_V69_Y1.7781.00
59_E63_E1.7501.00
159_E163_K1.6891.00
117_E120_L1.6821.00
147_K161_Y1.6771.00
19_N24_N1.6701.00
95_F129_F1.6691.00
31_A37_L1.6091.00
112_I128_L1.5881.00
93_Y129_F1.5841.00
23_R118_G1.5791.00
31_A45_I1.4861.00
25_V28_I1.4201.00
108_Q133_P1.4151.00
91_R94_D1.4091.00
134_E140_K1.3901.00
67_W72_G1.3861.00
24_N49_L1.3821.00
38_S41_E1.3721.00
20_T25_V1.3321.00
46_A65_L1.3281.00
27_R30_E1.3231.00
164_L168_Y1.3221.00
94_D97_Q1.3191.00
166_E169_A1.3151.00
54_P57_D1.3111.00
105_A109_V1.3011.00
153_L157_E1.2781.00
57_D60_E1.2721.00
101_Y137_K1.2661.00
31_A49_L1.2591.00
105_A108_Q1.2431.00
21_D119_Y1.2301.00
144_I164_L1.2190.99
120_L128_L1.2180.99
137_K141_I1.2160.99
50_L65_L1.2140.99
141_I144_I1.2060.99
6_P123_W1.2020.99
61_A68_F1.2010.99
100_E130_N1.1960.99
144_I147_K1.1930.99
37_L41_E1.1550.99
107_L111_G1.1420.99
115_R124_K1.1380.99
147_K157_E1.1350.99
104_A131_G1.1330.99
60_E63_E1.1270.99
105_A137_K1.1200.99
139_S142_I1.1180.99
23_R119_Y1.1070.99
9_V67_W1.0920.99
150_K153_L1.0890.99
120_L124_K1.0800.99
95_F126_L1.0780.99
20_T24_N1.0730.99
105_A136_T1.0680.99
135_D140_K1.0590.99
112_I117_E1.0500.98
143_G147_K1.0330.98
154_D157_E1.0330.98
57_D61_A1.0260.98
161_Y165_K1.0070.98
106_F114_L1.0000.98
16_Y55_P0.9930.98
103_Y107_L0.9830.98
149_L153_L0.9830.98
131_G137_K0.9810.98
28_I50_L0.9730.97
149_L162_R0.9530.97
32_L46_A0.9430.97
142_I146_S0.9390.97
99_A103_Y0.9330.97
34_D42_K0.9240.97
51_Y61_A0.9110.96
110_Y113_D0.9040.96
109_V136_T0.9030.96
144_I160_F0.9010.96
68_F72_G0.8950.96
47_L51_Y0.8930.96
154_D158_R0.8920.96
157_E161_Y0.8900.96
92_L142_I0.8720.95
110_Y131_G0.8710.95
112_I120_L0.8700.95
9_V51_Y0.8680.95
110_Y114_L0.8570.95
106_F110_Y0.8540.95
105_A132_L0.8490.94
97_Q101_Y0.8470.94
106_F125_F0.8470.94
27_R31_A0.8450.94
24_N27_R0.8400.94
27_R34_D0.8350.94
107_L113_D0.8310.94
64_K68_F0.8270.94
104_A127_A0.8230.93
155_K159_E0.8220.93
12_D60_E0.8190.93
73_K100_E0.8130.93
106_F112_I0.8110.93
29_F69_Y0.8080.93
143_G146_S0.8060.93
140_K143_G0.8040.93
98_D145_R0.8020.93
149_L152_K0.7980.92
19_N52_P0.7880.92
103_Y114_L0.7790.91
134_E139_S0.7780.91
6_P121_H0.7740.91
27_R49_L0.7720.91
26_L30_E0.7700.91
106_F128_L0.7590.90
100_E127_A0.7510.90
156_E159_E0.7450.90
104_A130_N0.7400.89
97_Q169_A0.7350.89
45_I48_E0.7350.89
59_E62_I0.7320.89
114_L128_L0.7280.88
156_E160_F0.7280.88
33_E96_E0.7260.88
25_V29_F0.7220.88
136_T139_S0.7180.88
137_K144_I0.7100.87
103_Y115_R0.7070.87
62_I66_L0.7040.87
149_L165_K0.7020.87
65_L68_F0.7010.86
99_A105_A0.7000.86
160_F163_K0.6940.86
134_E143_G0.6890.86
103_Y127_A0.6870.85
148_K152_K0.6840.85
106_F132_L0.6820.85
14_K17_P0.6820.85
31_A46_A0.6810.85
101_Y131_G0.6780.85
31_A42_K0.6760.84
146_S150_K0.6710.84
159_E162_R0.6710.84
17_P52_P0.6690.84
31_A34_D0.6680.84
68_F121_H0.6670.84
150_K154_D0.6640.83
107_L112_I0.6630.83
83_D86_G0.6610.83
153_L160_F0.6570.83
55_P61_A0.6530.82
149_L158_R0.6480.82
101_Y105_A0.6480.82
34_D37_L0.6470.82
164_L167_L0.6440.82
37_L45_I0.6430.81
84_E87_N0.6410.81
148_K154_D0.6360.81
148_K161_Y0.6360.81
148_K151_G0.6350.81
28_I46_A0.6340.80
28_I32_L0.6310.80
33_E91_R0.6300.80
7_T119_Y0.6210.79
109_V132_L0.6180.79
141_I168_Y0.6130.78
11_V57_D0.6090.78
133_P142_I0.6070.78
22_F114_L0.6030.77
39_D42_K0.6020.77
45_I49_L0.5980.77
139_S143_G0.5920.76
132_L139_S0.5870.75
161_Y164_L0.5870.75
99_A127_A0.5860.75
103_Y129_F0.5850.75
149_L161_Y0.5840.75
66_L69_Y0.5800.74
165_K168_Y0.5780.74
28_I69_Y0.5770.74
39_D43_I0.5770.74
162_R165_K0.5720.73
153_L161_Y0.5720.73
161_Y169_A0.5710.73
94_D151_G0.5710.73
105_A141_I0.5690.73
107_L117_E0.5690.73
66_L70_N0.5620.72
114_L132_L0.5600.72
20_T28_I0.5580.71
29_F33_E0.5570.71
153_L165_K0.5530.71
152_K157_E0.5520.71
32_L42_K0.5450.70
141_I164_L0.5430.69
40_E44_L0.5420.69
47_L58_L0.5390.69
133_P140_K0.5380.69
106_F129_F0.5380.69
29_F93_Y0.5350.68
153_L158_R0.5340.68
78_K87_N0.5320.68
43_I46_A0.5300.68
158_R162_R0.5290.67
11_V64_K0.5290.67
53_E154_D0.5280.67
83_D90_P0.5280.67
47_L61_A0.5250.67
102_I129_F0.5230.67
26_L29_F0.5230.67
22_F125_F0.5220.66
6_P11_V0.5210.66
47_L72_G0.5190.66
125_F129_F0.5160.66
16_Y97_Q0.5150.65
23_R117_E0.5140.65
147_K152_K0.5140.65
22_F106_F0.5140.65
67_W71_C0.5130.65
61_A64_K0.5120.65
71_C123_W0.5100.65
147_K165_K0.5080.64
22_F117_E0.5050.64
22_F31_A0.5030.64
114_L156_E0.5020.63
93_Y130_N0.5010.63
105_A131_G0.5000.63
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4oh8B 1 0.2059 6 0.95 Contact Map
2ii2A 1 0.6 5.6 0.95 Contact Map
1x4rA 1 0.2353 5.1 0.951 Contact Map
2h2kA 2 0.5529 4.9 0.952 Contact Map
2qipA 2 0.4294 4.4 0.953 Contact Map
3lijA 1 0.7118 3.1 0.956 Contact Map
1xl3C 1 0.2176 2.7 0.957 Contact Map
4un4B 1 0.8824 2.6 0.958 Contact Map
2kouA 1 0.4412 2.4 0.959 Contact Map
4qnuA 2 0.4412 2.1 0.96 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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