GREMLIN Database
Phage_GP20 - Phage minor structural protein GP20
PFAM: PF06810 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 149 (137)
Sequences: 2624 (2186)
Seq/√Len: 186.7
META: 0.815

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
69_K73_E2.6911.00
60_E64_K2.5651.00
27_K30_L2.4141.00
96_N131_D2.3211.00
71_E75_K2.2951.00
121_D125_K2.1831.00
67_T71_E2.0621.00
125_K129_E2.0491.00
11_N14_Y1.9951.00
56_K60_E1.9821.00
63_A67_T1.9551.00
59_E62_Q1.8681.00
26_E31_K1.8541.00
57_Q60_E1.8181.00
110_K118_K1.8131.00
42_E45_K1.7901.00
66_K70_E1.7501.00
20_F23_V1.7291.00
23_V27_K1.6941.00
9_A12_G1.6751.00
57_Q62_Q1.6711.00
112_D116_K1.6551.00
17_K21_D1.6481.00
27_K31_K1.6211.00
50_D53_E1.6001.00
59_E63_A1.5901.00
79_L83_N1.5181.00
70_E74_A1.5081.00
105_D108_K1.4811.00
93_K136_E1.4681.00
7_M12_G1.4661.00
78_D82_D1.4621.00
29_T33_Q1.4351.00
39_K43_E1.4301.00
20_F24_N1.4161.00
10_E13_K1.4101.00
23_V26_E1.3911.00
86_K101_K1.3771.00
24_N28_K1.3651.00
72_Y75_K1.3531.00
32_E36_E1.3491.00
34_L37_R1.3271.00
62_Q66_K1.3221.00
76_L79_L1.3181.00
99_A103_L1.3101.00
10_E14_Y1.3051.00
94_A100_V1.2711.00
119_G122_E1.2711.00
19_K22_E1.2611.00
19_K24_N1.2601.00
74_A78_D1.2291.00
52_E55_K1.2201.00
35_K39_K1.2101.00
21_D24_N1.1901.00
99_A102_A1.1891.00
42_E46_K1.1801.00
36_E40_Q1.1731.00
95_K136_E1.1731.00
106_L109_L1.1231.00
36_E39_K1.1221.00
53_E57_Q1.1211.00
32_E35_K1.1191.00
48_A51_N1.1111.00
67_T70_E1.1061.00
64_K68_A1.1061.00
89_L94_A1.1051.00
77_A81_L1.1041.00
126_A129_E1.0911.00
55_K59_E1.0861.00
73_E77_A1.0841.00
7_M11_N1.0651.00
58_I61_L1.0651.00
40_Q43_E1.0571.00
33_Q36_E1.0561.00
88_A91_G1.0531.00
30_L33_Q1.0441.00
9_A13_K1.0441.00
43_E46_K1.0421.00
43_E47_S1.0371.00
125_K128_K1.0281.00
88_A92_A1.0171.00
24_N27_K1.0090.99
25_E28_K1.0080.99
33_Q38_D1.0040.99
37_R40_Q0.9980.99
68_A71_E0.9900.99
122_E125_K0.9830.99
64_K67_T0.9740.99
96_N99_A0.9610.99
98_K102_A0.9450.99
88_A121_D0.9420.99
75_K80_K0.9410.99
65_N68_A0.9400.99
28_K31_K0.9290.99
4_D7_M0.9250.99
40_Q45_K0.9240.99
60_E63_A0.9200.99
126_A130_S0.9160.99
34_L38_D0.9090.99
7_M14_Y0.9050.99
53_E56_K0.9040.99
31_K35_K0.8970.99
52_E56_K0.8870.99
81_L85_L0.8820.99
98_K105_D0.8760.99
96_N133_Y0.8760.99
11_N16_P0.8690.98
98_K103_L0.8640.98
112_D118_K0.8620.98
17_K20_F0.8600.98
29_T32_E0.8380.98
56_K59_E0.8350.98
7_M10_E0.8310.98
18_A22_E0.8260.98
92_A124_L0.8210.98
99_A131_D0.8130.98
96_N103_L0.8020.97
63_A66_K0.7900.97
47_S50_D0.7860.97
127_L131_D0.7780.97
72_Y79_L0.7780.97
47_S51_N0.7770.97
28_K32_E0.7650.97
72_Y76_L0.7560.96
69_K72_Y0.7530.96
77_A110_K0.7490.96
51_N55_K0.7430.96
108_K122_E0.7400.96
83_N87_L0.7390.96
49_G55_K0.7370.96
26_E29_T0.7340.96
61_L65_N0.7310.96
14_Y20_F0.7200.95
13_K16_P0.7170.95
16_P19_K0.7140.95
19_K23_V0.7050.95
4_D10_E0.7040.95
11_N15_I0.7020.95
10_E16_P0.6940.94
40_Q65_N0.6890.94
68_A72_Y0.6880.94
100_V103_L0.6830.94
88_A120_L0.6790.94
21_D25_E0.6780.94
117_V120_L0.6690.93
66_K69_K0.6690.93
9_A14_Y0.6650.93
95_K133_Y0.6630.93
86_K98_K0.6600.93
111_L117_V0.6580.92
123_Q126_A0.6570.92
95_K131_D0.6560.92
18_A21_D0.6530.92
112_D115_G0.6520.92
109_L123_Q0.6470.92
82_D101_K0.6470.92
26_E30_L0.6360.91
14_Y19_K0.6350.91
50_D55_K0.6330.91
119_G123_Q0.6300.91
37_R41_L0.6160.90
95_K99_A0.6100.89
58_I65_N0.6040.89
54_L58_I0.6020.89
11_N21_D0.5950.88
81_L109_L0.5950.88
81_L106_L0.5920.88
47_S55_K0.5900.88
51_N54_L0.5890.88
99_A133_Y0.5870.87
5_K9_A0.5870.87
9_A16_P0.5840.87
87_L90_T0.5820.87
4_D11_N0.5800.87
11_N19_K0.5800.87
98_K131_D0.5760.87
78_D106_L0.5640.85
83_N86_K0.5620.85
37_R61_L0.5580.85
5_K10_E0.5570.85
12_G16_P0.5530.84
102_A105_D0.5530.84
39_K42_E0.5520.84
81_L117_V0.5520.84
89_L92_A0.5510.84
130_S133_Y0.5500.84
84_A117_V0.5460.83
77_A80_K0.5430.83
54_L57_Q0.5420.83
37_R65_N0.5380.83
93_K138_E0.5310.82
88_A116_K0.5310.82
10_E19_K0.5300.82
61_L64_K0.5280.81
100_V133_Y0.5210.81
57_Q61_L0.5210.81
7_M16_P0.5200.80
90_T97_P0.5190.80
97_P100_V0.5160.80
30_L34_L0.5160.80
71_E74_A0.5140.80
120_L123_Q0.5100.79
35_K38_D0.5070.79
38_D65_N0.5050.79
80_K84_A0.5020.78
42_E62_Q0.5000.78
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3c9iA 5 0.8121 70.6 0.86 Contact Map
3ojaB 1 0.5101 54.7 0.874 Contact Map
4q4gX 1 0 53.3 0.875 Contact Map
3q0xA 2 0.4094 48.8 0.878 Contact Map
4w7zA 3 0.4295 47.3 0.879 Contact Map
3mq9A 4 0.5101 40.5 0.884 Contact Map
4h5yA 1 0.9329 39.2 0.885 Contact Map
1deqA 1 0.7987 37.6 0.886 Contact Map
3vkgA 2 0.8591 36.1 0.887 Contact Map
4jzpA 2 0.349 35.6 0.887 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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