GREMLIN Database
Minor_tail_Z - Prophage minor tail protein Z (GPZ)
PFAM: PF06763 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 190 (173)
Sequences: 1384 (1233)
Seq/√Len: 93.7
META: 0.793

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
39_V54_R4.2071.00
31_A69_A3.1531.00
175_E179_E3.1231.00
80_L83_L3.1031.00
33_K171_R2.9911.00
43_R50_A2.8161.00
175_E178_H2.7051.00
126_M130_H2.4091.00
28_N62_A2.3451.00
126_M132_G2.3091.00
171_R174_K2.3021.00
40_R50_A2.2411.00
36_T40_R2.2331.00
41_E44_K2.1691.00
83_L86_A2.0601.00
25_R179_E1.9821.00
132_G147_E1.9781.00
39_V43_R1.9731.00
33_K37_E1.9441.00
39_V50_A1.9211.00
29_R32_A1.9121.00
125_T131_R1.8821.00
171_R175_E1.8751.00
49_K52_D1.8271.00
50_A54_R1.8021.00
84_G88_V1.7621.00
120_G135_R1.6871.00
33_K36_T1.6741.00
27_L69_A1.6741.00
101_V104_V1.6431.00
130_H147_E1.6371.00
62_A67_L1.6331.00
150_G153_V1.6041.00
179_E182_R1.6031.00
105_K108_G1.5331.00
60_K66_K1.5031.00
24_A64_A1.4941.00
32_A36_T1.4921.00
88_V91_P1.4771.00
29_R179_E1.4601.00
29_R175_E1.4551.00
26_A30_T1.4290.99
35_R54_R1.3970.99
29_R33_K1.3860.99
174_K178_H1.3760.99
78_L83_L1.3510.99
172_L176_L1.3390.99
14_L17_K1.3380.99
17_K21_K1.3350.99
33_K175_E1.3290.99
34_A168_A1.3000.99
25_R183_Q1.2960.99
23_L176_L1.2950.99
152_S155_Q1.2920.99
79_P82_K1.2900.99
111_V114_G1.2880.99
84_G87_K1.2720.99
43_R47_N1.2670.99
24_A62_A1.2590.99
101_V105_K1.2540.99
147_E150_G1.2310.98
178_H182_R1.2230.98
43_R53_V1.2150.98
32_A35_R1.2110.98
135_R146_K1.2010.98
118_I121_A1.1820.98
138_K144_P1.1740.98
124_A132_G1.1720.98
175_E182_R1.1570.98
108_G113_V1.1400.97
116_K120_G1.1390.97
134_F145_I1.1340.97
167_K171_R1.1270.97
179_E183_Q1.1190.97
149_Y153_V1.1040.97
152_S156_M1.0960.97
35_R59_I1.0950.97
42_I157_T1.0950.97
124_A143_L1.0880.97
43_R54_R1.0650.96
37_E40_R1.0620.96
33_K167_K1.0580.96
48_I53_V1.0490.96
149_Y152_S1.0460.96
43_R49_K1.0450.96
79_P83_L1.0400.96
153_V156_M1.0390.96
57_L73_V1.0350.95
13_G17_K1.0300.95
52_D55_K1.0230.95
24_A28_N1.0170.95
63_T67_L1.0170.95
62_A69_A1.0130.95
21_K25_R1.0000.95
92_K95_R0.9850.94
48_I52_D0.9740.94
102_S105_K0.9670.93
34_A164_V0.9610.93
156_M159_A0.9470.93
75_G78_L0.9460.93
103_A107_R0.9450.93
126_M147_E0.9350.92
118_I135_R0.9300.92
126_M134_F0.9280.92
31_A59_I0.9230.92
90_K95_R0.9220.92
27_L67_L0.9220.92
170_E174_K0.9010.91
138_K142_R0.8920.90
134_F143_L0.8860.90
109_V113_V0.8790.90
108_G114_G0.8760.90
77_R83_L0.8670.89
16_K20_P0.8640.89
171_R178_H0.8580.89
128_N132_G0.8580.89
133_V136_R0.8570.89
25_R182_R0.8420.88
23_L27_L0.8380.87
43_R46_Y0.8370.87
41_E163_E0.8360.87
100_G104_V0.8360.87
145_I150_G0.8300.87
167_K170_E0.8280.87
161_E165_E0.8260.87
89_R92_K0.8240.87
90_K93_R0.8240.87
38_A160_V0.8210.86
91_P94_G0.8200.86
177_E181_N0.8200.86
25_R29_R0.8080.85
32_A61_K0.7890.84
126_M131_R0.7860.84
101_V106_K0.7830.84
104_V107_R0.7830.84
90_K94_G0.7810.84
150_G156_M0.7810.84
37_E167_K0.7790.83
146_K149_Y0.7740.83
48_I78_L0.7740.83
141_K144_P0.7560.81
23_L172_L0.7520.81
159_A162_E0.7470.81
81_I84_G0.7440.80
28_N61_K0.7410.80
12_G15_P0.7370.80
27_L172_L0.7300.79
176_L184_L0.7290.79
124_A134_F0.7270.79
123_I131_R0.7170.78
169_E173_P0.7150.78
85_A88_V0.7130.78
34_A171_R0.7120.77
122_F136_R0.7120.77
87_K90_K0.7080.77
105_K109_V0.7070.77
124_A130_H0.7050.77
23_L26_A0.7040.77
168_A178_H0.7000.76
176_L180_L0.6970.76
139_G142_R0.6910.75
101_V107_R0.6890.75
69_A73_V0.6890.75
91_P95_R0.6870.75
103_A109_V0.6800.74
52_D56_R0.6760.74
27_L31_A0.6760.74
51_K55_K0.6750.74
102_S109_V0.6710.73
46_Y156_M0.6680.73
123_I133_V0.6650.73
23_L67_L0.6620.72
61_K67_L0.6620.72
122_F129_G0.6590.72
39_V57_L0.6580.72
139_G144_P0.6580.72
37_E171_R0.6510.71
124_A128_N0.6500.71
17_K20_P0.6490.71
135_R148_L0.6480.71
88_V92_K0.6480.71
62_A66_K0.6480.71
86_A90_K0.6450.70
172_L179_E0.6450.70
157_T160_V0.6440.70
12_G17_K0.6350.69
46_Y118_I0.6330.69
20_P24_A0.6300.68
46_Y52_D0.6260.68
78_L81_I0.6250.68
117_T120_G0.6230.68
87_K92_K0.6220.67
31_A34_A0.6200.67
108_G115_R0.6200.67
89_R93_R0.6180.67
62_A71_I0.6170.67
60_K63_T0.6170.67
95_R99_K0.6160.67
168_A172_L0.6130.66
106_K109_V0.6100.66
86_A92_K0.6070.66
36_T43_R0.6040.65
91_P96_K0.5990.65
100_G103_A0.5980.64
125_T128_N0.5970.64
147_E151_P0.5970.64
21_K64_A0.5970.64
178_H181_N0.5960.64
101_V133_V0.5950.64
87_K94_G0.5920.64
38_A164_V0.5920.64
37_E41_E0.5860.63
103_A106_K0.5840.63
168_A174_K0.5820.62
80_L84_G0.5810.62
71_I78_L0.5800.62
69_A75_G0.5780.62
26_A179_E0.5720.61
165_E169_E0.5710.61
42_I53_V0.5710.61
172_L183_Q0.5680.60
166_E170_E0.5650.60
180_L183_Q0.5630.60
19_V23_L0.5630.60
95_R100_G0.5610.60
16_K22_A0.5490.58
15_P18_A0.5470.58
134_F147_E0.5450.57
76_G83_L0.5440.57
129_G153_V0.5430.57
132_G145_I0.5410.57
147_E152_S0.5400.57
136_R144_P0.5390.57
86_A89_R0.5320.56
36_T178_H0.5300.55
36_T50_A0.5290.55
158_E162_E0.5290.55
11_L20_P0.5280.55
150_G154_P0.5270.55
67_L71_I0.5250.55
50_A53_V0.5240.54
9_R13_G0.5210.54
75_G83_L0.5200.54
15_P20_P0.5200.54
172_L182_R0.5190.54
163_E167_K0.5160.53
156_M160_V0.5140.53
21_K165_E0.5140.53
100_G105_K0.5120.53
140_K144_P0.5110.53
23_L135_R0.5100.52
157_T161_E0.5080.52
75_G154_P0.5050.52
30_T168_A0.5050.52
165_E172_L0.5040.52
136_R139_G0.5040.52
177_E184_L0.5030.52
89_R94_G0.5020.51
151_P156_M0.5020.51
177_E180_L0.5000.51
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3au4B 1 0.1316 7.6 0.935 Contact Map
2ikfA 1 0.2105 6.5 0.937 Contact Map
1ybxA 2 0.2421 5.6 0.939 Contact Map
2oeeA 2 0.2316 3.3 0.945 Contact Map
4uotA 3 0.0895 3.3 0.945 Contact Map
3f42A 4 0.2263 3.2 0.946 Contact Map
4layA 1 0.2895 2.7 0.948 Contact Map
1yc6A 8 0.2737 2.6 0.949 Contact Map
1y66A 3 0.0842 2.5 0.949 Contact Map
2yu1A 1 0.3105 2.4 0.949 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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