Phage_min_cap2 - PFAM28P - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Phage_min_cap2 - Phage minor capsid protein 2

PFAM:	PF06152	Sequences: LTPEQLEALADPIVELYEELELELIADIARRLKKAGEGTDTADWQLEKLQELGALRREIEKIIAKLTGKSEKEIRKLLEEAGEKGYKDDEAELAIYKAAGLKPIPLEESPALQQLLEALIKQTKGDLRNLTNTTAFRPAQDAYRKALDKAVMQVLTGAFTYNQAIRRAVKELADSGIRTVDYKSGRRWRLDSYVRMAVRTGVNQAANEGQEARAEELGIDLVEVSAHAGARPDHAPWQGKVYSISGKEGGGSDKYYPLLSVTGYGTAAGLGGPNCRHSFYPYIPGISSKPTYTDEELEEIDEEENEKVNGKEYTGYEATQKQRALERQIRKQKRELAAAKAAGDKEDIKKAKAKLRELQAEYRDFSK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_10
Length:	367 (359)
Sequences:	1587 (1371)
Seq/√Len:	72.3
META:	0.778

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
267_A	273_P	5.122	1.00
160_T	163_Q	5.092	1.00
224_V	242_Y	4.403	1.00
316_Y	320_Q	4.281	1.00
332_Q	358_L	4.248	1.00
321_K	324_A	3.445	1.00
324_A	328_Q	3.221	1.00
241_V	282_Y	3.092	1.00
220_D	245_S	3.053	1.00
221_L	284_P	2.917	1.00
149_K	171_E	2.889	1.00
336_L	355_L	2.843	1.00
220_D	243_S	2.721	1.00
153_Q	167_R	2.679	1.00
271_G	279_F	2.568	1.00
207_N	271_G	2.543	1.00
359_Q	363_R	2.528	1.00
174_D	335_E	2.523	1.00
25_I	338_A	2.500	1.00
192_S	196_M	2.464	1.00
188_W	196_M	2.379	1.00
215_E	244_I	2.375	1.00
283_I	286_I	2.357	1.00
189_R	192_S	2.331	1.00
328_Q	358_L	2.308	1.00
323_R	326_E	2.276	1.00
325_L	362_Y	2.264	1.00
90_E	213_R	2.225	1.00
257_P	260_S	2.190	1.00
195_R	199_R	2.186	1.00
62_I	65_K	2.150	1.00
256_Y	259_L	2.123	1.00
336_L	352_K	2.121	1.00
325_L	358_L	2.115	1.00
2_T	5_Q	2.045	1.00
224_V	270_L	2.005	1.00
356_R	359_Q	1.981	1.00
188_W	192_S	1.938	1.00
257_P	261_V	1.911	1.00
262_T	270_L	1.907	1.00
355_L	359_Q	1.877	1.00
336_L	348_I	1.868	1.00
354_K	358_L	1.845	1.00
268_A	273_P	1.843	1.00
262_T	265_G	1.809	1.00
258_L	261_V	1.804	1.00
73_E	76_K	1.788	1.00
208_E	211_E	1.784	1.00
332_Q	335_E	1.780	1.00
221_L	241_V	1.776	1.00
362_Y	366_S	1.774	1.00
329_I	333_K	1.756	1.00
294_D	298_E	1.736	1.00
233_D	268_A	1.728	1.00
348_I	352_K	1.727	1.00
221_L	282_Y	1.720	1.00
314_T	317_E	1.712	1.00
182_Y	188_W	1.711	1.00
181_D	187_R	1.705	1.00
354_K	357_E	1.675	1.00
332_Q	355_L	1.640	1.00
332_Q	351_A	1.625	0.99
323_R	330_R	1.608	0.99
329_I	362_Y	1.605	0.99
233_D	236_P	1.604	0.99
230_A	235_A	1.603	0.99
214_A	222_V	1.597	0.99
263_G	266_T	1.583	0.99
48_K	51_E	1.572	0.99
232_P	316_Y	1.570	0.99
232_P	236_P	1.556	0.99
361_E	364_D	1.556	0.99
257_P	262_T	1.535	0.99
360_A	363_R	1.517	0.99
322_Q	326_E	1.516	0.99
318_A	365_F	1.511	0.99
140_Q	144_R	1.500	0.99
339_A	347_D	1.492	0.99
231_R	272_G	1.488	0.99
220_D	246_G	1.482	0.99
332_Q	336_L	1.476	0.99
224_V	279_F	1.466	0.99
256_Y	260_S	1.459	0.99
27_D	31_R	1.458	0.99
243_S	246_G	1.452	0.99
19_E	23_E	1.438	0.99
335_E	351_A	1.419	0.99
238_Q	277_H	1.404	0.98
358_L	362_Y	1.402	0.98
328_Q	332_Q	1.399	0.98
255_Y	258_L	1.399	0.98
142_A	172_L	1.393	0.98
221_L	243_S	1.383	0.98
178_R	187_R	1.377	0.98
170_K	335_E	1.373	0.98
242_Y	258_L	1.363	0.98
307_K	312_E	1.361	0.98
325_L	329_I	1.355	0.98
259_L	262_T	1.346	0.98
258_L	262_T	1.344	0.98
256_Y	262_T	1.332	0.98
44_W	48_K	1.323	0.98
269_G	272_G	1.319	0.98
359_Q	362_Y	1.306	0.97
225_S	277_H	1.299	0.97
345_K	348_I	1.279	0.97
329_I	366_S	1.274	0.97
226_A	238_Q	1.273	0.97
164_A	168_A	1.273	0.97
271_G	278_S	1.268	0.97
326_E	330_R	1.250	0.97
230_A	238_Q	1.231	0.96
227_H	277_H	1.227	0.96
154_V	164_A	1.225	0.96
246_G	249_G	1.219	0.96
18_E	21_E	1.215	0.96
159_F	167_R	1.208	0.96
180_V	188_W	1.207	0.96
211_E	279_F	1.206	0.96
20_L	24_L	1.196	0.96
340_K	348_I	1.196	0.96
149_K	153_Q	1.196	0.96
246_G	251_G	1.192	0.96
27_D	30_R	1.186	0.96
290_P	294_D	1.185	0.96
196_M	273_P	1.174	0.95
256_Y	261_V	1.172	0.95
213_R	216_E	1.163	0.95
328_Q	331_K	1.155	0.95
117_E	121_K	1.150	0.95
264_Y	279_F	1.149	0.95
252_S	255_Y	1.143	0.95
316_Y	319_T	1.140	0.94
258_L	264_Y	1.137	0.94
250_G	255_Y	1.130	0.94
212_A	215_E	1.121	0.94
200_T	204_Q	1.120	0.94
122_Q	132_N	1.112	0.94
358_L	361_E	1.111	0.94
290_P	293_T	1.109	0.94
303_E	306_E	1.099	0.93
302_E	306_E	1.093	0.93
355_L	358_L	1.093	0.93
296_E	300_I	1.084	0.93
224_V	262_T	1.083	0.93
261_V	265_G	1.080	0.93
242_Y	261_V	1.079	0.93
293_T	296_E	1.076	0.93
122_Q	129_N	1.076	0.93
226_A	300_I	1.075	0.93
39_T	42_A	1.075	0.93
237_W	270_L	1.073	0.92
276_R	319_T	1.061	0.92
47_E	51_E	1.055	0.92
179_T	187_R	1.054	0.92
242_Y	270_L	1.054	0.92
344_D	347_D	1.049	0.92
253_D	256_Y	1.048	0.92
332_Q	354_K	1.044	0.91
242_Y	279_F	1.041	0.91
222_V	279_F	1.039	0.91
222_V	270_L	1.038	0.91
222_V	244_I	1.030	0.91
258_L	265_G	1.029	0.91
24_L	177_I	1.024	0.91
47_E	50_Q	1.018	0.90
324_A	358_L	1.016	0.90
341_A	346_E	1.013	0.90
208_E	212_A	1.008	0.90
5_Q	8_A	1.003	0.90
118_A	122_Q	1.001	0.90
27_D	42_A	1.000	0.90
184_S	188_W	0.997	0.89
242_Y	262_T	0.994	0.89
243_S	247_K	0.990	0.89
20_L	63_I	0.989	0.89
225_S	278_S	0.988	0.89
209_G	213_R	0.985	0.89
310_G	313_Y	0.985	0.89
196_M	199_R	0.975	0.88
335_E	339_A	0.971	0.88
300_I	304_E	0.971	0.88
234_H	271_G	0.970	0.88
189_R	334_R	0.969	0.88
192_S	195_R	0.969	0.88
237_W	242_Y	0.966	0.88
105_P	108_E	0.958	0.87
285_G	288_S	0.955	0.87
30_R	45_Q	0.947	0.87
222_V	242_Y	0.944	0.87
119_L	126_D	0.942	0.87
249_G	253_D	0.941	0.86
357_E	361_E	0.936	0.86
359_Q	366_S	0.931	0.86
30_R	42_A	0.929	0.86
222_V	262_T	0.928	0.86
345_K	349_K	0.928	0.86
119_L	123_T	0.927	0.86
251_G	255_Y	0.927	0.86
249_G	252_S	0.927	0.86
172_L	177_I	0.926	0.86
119_L	205_A	0.925	0.86
193_Y	234_H	0.924	0.85
152_M	155_L	0.922	0.85
141_D	145_K	0.921	0.85
304_E	307_K	0.918	0.85
42_A	45_Q	0.916	0.85
119_L	130_L	0.913	0.85
223_E	290_P	0.908	0.84
258_L	279_F	0.906	0.84
141_D	144_R	0.901	0.84
351_A	354_K	0.900	0.84
243_S	257_P	0.899	0.84
223_E	292_Y	0.898	0.84
356_R	360_A	0.897	0.84
325_L	332_Q	0.893	0.83
115_L	119_L	0.892	0.83
266_T	273_P	0.889	0.83
212_A	216_E	0.889	0.83
347_D	350_K	0.885	0.83
175_S	178_R	0.881	0.83
347_D	351_A	0.879	0.83
330_R	333_K	0.876	0.82
331_K	335_E	0.875	0.82
363_R	366_S	0.874	0.82
113_Q	117_E	0.871	0.82
166_R	344_D	0.870	0.82
325_L	328_Q	0.870	0.82
255_Y	259_L	0.869	0.82
13_I	17_Y	0.863	0.81
19_E	149_K	0.863	0.81
329_I	359_Q	0.862	0.81
322_Q	366_S	0.862	0.81
340_K	352_K	0.861	0.81
69_K	74_I	0.860	0.81
122_Q	126_D	0.859	0.81
126_D	148_D	0.858	0.81
258_L	263_G	0.858	0.81
352_K	356_R	0.857	0.81
137_R	141_D	0.857	0.81
348_I	355_L	0.850	0.80
267_A	272_G	0.845	0.80
322_Q	362_Y	0.844	0.80
310_G	314_T	0.841	0.80
11_D	15_E	0.840	0.80
142_A	146_A	0.836	0.79
227_H	276_R	0.836	0.79
315_G	319_T	0.835	0.79
259_L	279_F	0.832	0.79
60_E	74_I	0.831	0.79
129_N	134_T	0.831	0.79
18_E	22_L	0.830	0.79
313_Y	318_A	0.829	0.79
188_W	197_A	0.824	0.78
323_R	333_K	0.824	0.78
97_K	100_G	0.822	0.78
270_L	279_F	0.819	0.78
262_T	272_G	0.818	0.78
321_K	325_L	0.815	0.77
192_S	274_N	0.815	0.77
90_E	217_L	0.814	0.77
163_Q	167_R	0.812	0.77
223_E	289_K	0.810	0.77
337_A	340_K	0.809	0.77
163_Q	166_R	0.806	0.77
318_A	322_Q	0.804	0.77
227_H	238_Q	0.802	0.76
235_A	238_Q	0.801	0.76
23_E	153_Q	0.799	0.76
258_L	270_L	0.795	0.76
69_K	73_E	0.793	0.76
75_R	124_K	0.785	0.75
130_L	133_T	0.784	0.75
4_E	8_A	0.783	0.75
224_V	258_L	0.780	0.74
355_L	363_R	0.780	0.74
259_L	263_G	0.777	0.74
43_D	47_E	0.777	0.74
299_E	303_E	0.776	0.74
117_E	120_I	0.775	0.74
292_Y	297_L	0.775	0.74
197_A	201_G	0.768	0.73
247_K	251_G	0.766	0.73
191_D	195_R	0.766	0.73
15_E	19_E	0.765	0.73
174_D	331_K	0.760	0.72
231_R	242_Y	0.758	0.72
11_D	14_V	0.754	0.72
145_K	149_K	0.753	0.72
325_L	361_E	0.752	0.72
188_W	193_Y	0.752	0.72
85_G	89_D	0.752	0.72
173_A	338_A	0.750	0.71
236_P	268_A	0.745	0.71
263_G	272_G	0.743	0.71
130_L	134_T	0.743	0.71
242_Y	259_L	0.740	0.70
153_Q	159_F	0.737	0.70
186_R	196_M	0.737	0.70
230_A	272_G	0.733	0.70
12_P	15_E	0.731	0.69
227_H	230_A	0.730	0.69
31_R	51_E	0.729	0.69
13_I	77_L	0.726	0.69
350_K	354_K	0.723	0.69
262_T	279_F	0.722	0.68
210_Q	213_R	0.721	0.68
146_A	172_L	0.721	0.68
31_R	42_A	0.714	0.68
226_A	230_A	0.714	0.68
229_G	319_T	0.708	0.67
261_V	264_Y	0.706	0.67
115_L	126_D	0.706	0.67
295_E	299_E	0.706	0.67
250_G	254_K	0.699	0.66
318_A	321_K	0.697	0.66
261_V	270_L	0.696	0.66
22_L	26_A	0.695	0.66
90_E	94_A	0.695	0.66
30_R	39_T	0.694	0.65
245_S	259_L	0.694	0.65
225_S	270_L	0.693	0.65
299_E	302_E	0.693	0.65
62_I	66_L	0.692	0.65
237_W	262_T	0.691	0.65
231_R	237_W	0.690	0.65
104_I	108_E	0.689	0.65
27_D	41_T	0.688	0.65
353_A	357_E	0.687	0.65
123_T	126_D	0.687	0.65
318_A	325_L	0.687	0.65
188_W	327_R	0.684	0.64
223_E	293_T	0.683	0.64
245_S	257_P	0.682	0.64
231_R	273_P	0.681	0.64
193_Y	199_R	0.677	0.64
322_Q	330_R	0.677	0.64
324_A	327_R	0.675	0.63
15_E	18_E	0.675	0.63
226_A	292_Y	0.675	0.63
31_R	35_A	0.674	0.63
120_I	126_D	0.674	0.63
221_L	245_S	0.674	0.63
214_A	281_P	0.674	0.63
348_I	359_Q	0.673	0.63
58_E	73_E	0.673	0.63
348_I	353_A	0.671	0.63
270_L	277_H	0.669	0.63
42_A	47_E	0.669	0.63
282_Y	290_P	0.665	0.62
115_L	127_L	0.665	0.62
169_V	173_A	0.663	0.62
26_A	341_A	0.663	0.62
247_K	257_P	0.663	0.62
118_A	208_E	0.662	0.62
96_Y	100_G	0.662	0.62
343_G	348_I	0.661	0.62
326_E	333_K	0.659	0.61
351_A	355_L	0.657	0.61
321_K	361_E	0.657	0.61
223_E	226_A	0.656	0.61
269_G	273_P	0.654	0.61
229_G	242_Y	0.654	0.61
5_Q	9_L	0.652	0.61
231_R	268_A	0.652	0.61
264_Y	272_G	0.651	0.60
122_Q	208_E	0.651	0.60
146_A	149_K	0.649	0.60
182_Y	186_R	0.649	0.60
255_Y	261_V	0.647	0.60
64_A	71_E	0.647	0.60
38_G	41_T	0.645	0.60
195_R	274_N	0.644	0.60
231_R	265_G	0.642	0.59
349_K	353_A	0.641	0.59
320_Q	323_R	0.639	0.59
225_S	280_Y	0.636	0.59
55_L	143_Y	0.636	0.59
54_A	58_E	0.635	0.59
322_Q	327_R	0.634	0.58
95_I	98_A	0.634	0.58
27_D	59_I	0.632	0.58
289_K	293_T	0.629	0.58
72_K	76_K	0.628	0.58
220_D	247_K	0.627	0.58
180_V	192_S	0.627	0.58
131_T	151_V	0.627	0.58
210_Q	281_P	0.626	0.58
120_I	124_K	0.626	0.58
295_E	300_I	0.626	0.58
27_D	39_T	0.626	0.58
293_T	297_L	0.625	0.57
262_T	269_G	0.625	0.57
356_R	363_R	0.624	0.57
332_Q	362_Y	0.624	0.57
133_T	136_F	0.623	0.57
304_E	312_E	0.621	0.57
115_L	122_Q	0.619	0.57
229_G	315_G	0.619	0.57
224_V	237_W	0.617	0.56
35_A	42_A	0.617	0.56
321_K	365_F	0.616	0.56
150_A	165_I	0.616	0.56
131_T	134_T	0.616	0.56
260_S	265_G	0.614	0.56
20_L	66_L	0.613	0.56
215_E	245_S	0.612	0.56
233_D	263_G	0.612	0.56
220_D	284_P	0.611	0.56
240_K	294_D	0.611	0.56
265_G	269_G	0.611	0.56
146_A	169_V	0.610	0.56
233_D	271_G	0.609	0.55
333_K	355_L	0.608	0.55
123_T	148_D	0.608	0.55
235_A	305_N	0.607	0.55
64_A	67_T	0.607	0.55
265_G	272_G	0.604	0.55
360_A	364_D	0.601	0.54
222_V	258_L	0.600	0.54
161_Y	199_R	0.597	0.54
154_V	198_V	0.596	0.54
230_A	269_G	0.594	0.54
237_W	269_G	0.594	0.54
29_A	338_A	0.594	0.54
27_D	45_Q	0.593	0.53
336_L	358_L	0.591	0.53
34_K	41_T	0.591	0.53
115_L	118_A	0.590	0.53
229_G	305_N	0.587	0.53
129_N	133_T	0.586	0.53
322_Q	329_I	0.586	0.53
288_S	292_Y	0.586	0.53
339_A	344_D	0.586	0.53
362_Y	365_F	0.585	0.53
355_L	362_Y	0.585	0.53
52_L	56_R	0.584	0.52
16_L	66_L	0.583	0.52
76_K	80_E	0.583	0.52
164_A	167_R	0.582	0.52
282_Y	289_K	0.582	0.52
241_V	290_P	0.582	0.52
224_V	271_G	0.582	0.52
138_P	178_R	0.580	0.52
200_T	269_G	0.580	0.52
197_A	200_T	0.579	0.52
167_R	170_K	0.579	0.52
109_S	112_L	0.578	0.52
108_E	111_A	0.577	0.52
348_I	351_A	0.577	0.52
119_L	131_T	0.572	0.51
48_K	52_L	0.571	0.51
186_R	192_S	0.571	0.51
183_K	188_W	0.570	0.51
71_E	75_R	0.570	0.51
211_E	215_E	0.570	0.51
318_A	326_E	0.567	0.50
214_A	282_Y	0.564	0.50
19_E	145_K	0.564	0.50
226_A	297_L	0.560	0.49
38_G	42_A	0.560	0.49
346_E	350_K	0.560	0.49
238_Q	242_Y	0.558	0.49
75_R	120_I	0.557	0.49
126_D	130_L	0.555	0.49
301_D	304_E	0.553	0.49
24_L	59_I	0.551	0.48
217_L	283_I	0.550	0.48
21_E	52_L	0.550	0.48
126_D	129_N	0.549	0.48
227_H	231_R	0.549	0.48
231_R	267_A	0.549	0.48
234_H	272_G	0.548	0.48
227_H	316_Y	0.548	0.48
288_S	291_T	0.546	0.48
321_K	328_Q	0.546	0.48
63_I	74_I	0.545	0.48
131_T	135_A	0.545	0.48
223_E	280_Y	0.544	0.47
182_Y	193_Y	0.543	0.47
146_A	168_A	0.543	0.47
151_V	155_L	0.543	0.47
211_E	244_I	0.541	0.47
246_G	250_G	0.540	0.47
114_Q	117_E	0.540	0.47
149_K	168_A	0.539	0.47
312_E	315_G	0.539	0.47
31_R	45_Q	0.537	0.47
160_T	166_R	0.537	0.47
4_E	7_E	0.537	0.47
305_N	308_V	0.536	0.46
25_I	173_A	0.534	0.46
222_V	257_P	0.534	0.46
337_A	341_A	0.533	0.46
119_L	122_Q	0.532	0.46
346_E	349_K	0.531	0.46
81_A	85_G	0.529	0.46
168_A	194_V	0.527	0.45
162_N	165_I	0.527	0.45
222_V	269_G	0.527	0.45
161_Y	165_I	0.526	0.45
237_W	268_A	0.526	0.45
262_T	266_T	0.526	0.45
94_A	97_K	0.525	0.45
249_G	255_Y	0.525	0.45
352_K	362_Y	0.525	0.45
244_I	247_K	0.524	0.45
203_N	207_N	0.524	0.45
17_Y	21_E	0.524	0.45
231_R	238_Q	0.523	0.45
56_R	60_E	0.522	0.45
79_E	120_I	0.522	0.45
245_S	249_G	0.521	0.45
322_Q	325_L	0.520	0.45
241_V	284_P	0.520	0.45
6_L	10_A	0.520	0.45
302_E	305_N	0.518	0.44
20_L	62_I	0.518	0.44
223_E	242_Y	0.517	0.44
210_Q	223_E	0.516	0.44
127_L	130_L	0.516	0.44
23_E	26_A	0.514	0.44
28_I	43_D	0.514	0.44
339_A	351_A	0.513	0.44
336_L	351_A	0.511	0.43
67_T	74_I	0.511	0.43
209_G	272_G	0.511	0.43
226_A	235_A	0.511	0.43
244_I	258_L	0.510	0.43
200_T	273_P	0.509	0.43
26_A	33_K	0.508	0.43
139_A	180_V	0.507	0.43
225_S	236_P	0.506	0.43
285_G	290_P	0.504	0.43
116_L	120_I	0.502	0.42
336_L	340_K	0.501	0.42
8_A	11_D	0.501	0.42
166_R	170_K	0.500	0.42

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2gd5A	2	0.1853	32.7	0.962	Contact Map
3frtA	1	0.1662	32	0.963	Contact Map
1t3jA	2	0.158	17.8	0.967	Contact Map
1zq1C	1	0	11.3	0.97	Contact Map
3al0B	1	0.4169	10.5	0.97	Contact Map
2g3qA	1	0.1172	9.9	0.97	Contact Map
3ip4B	1	0.4414	9.7	0.971	Contact Map
4zuzA	1	0.2153	9.6	0.971	Contact Map
3sjaC	1	0.1444	8.3	0.971	Contact Map
2zc2A	1	0.188	8.2	0.972	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0103 seconds.