CreD - PFAM28P - GREMLIN Contacts

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CreD - Inner membrane protein CreD

PFAM:	PF06123	Sequences: SLTLKLLLIGFLILLLLIPLAMIQGLISERQSRRDEAVAEIASKWGGAQTIAGPVLVIPYTETVTETDGEGKTETRTVTRYLYFLPETLDIDGDLKPEERKRGIYEVPVYTADLKLSGRFDLPDLAALGIDPEDILWDKAELVLGISDLRGIRENPTLTWNGQPLAFEPGTGSAGLLGSGIHAPLPLLAAAAGAPLPFSFDLDLNGSESLSFVPLGKTTTVTLTSDWPHPSFDGAFLPDEREVTDDGFTATWKVSHLNRNYPQQWTAGDGSKYNLSASAFGVSLIEPVDHYQKSERAVKYAILFIGLTFLAFFLFEVLSKLRIHPVQYLLVGLALVLFYLLLLSLSEHIGFNLAYLIAAAATVGLITLYSRSVLKSRRRALLFGGLLALLYGFLYVLLQLEDYALLIGSIGLFAILAAVMYLTRKIDWY	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_10
Length:	429 (427)
Sequences:	4893 (3732)
Seq/√Len:	180.6
META:	0.861

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
118_G	198_F	5.016	1.00
93_G	223_L	4.546	1.00
95_L	284_L	3.733	1.00
225_S	247_G	3.583	1.00
41_I	107_V	3.534	1.00
20_L	301_A	3.500	1.00
367_T	384_G	3.405	1.00
99_E	106_E	3.240	1.00
113_D	203_D	3.221	1.00
116_L	200_F	3.167	1.00
100_R	241_R	3.132	1.00
87_E	217_K	3.105	1.00
90_D	220_T	3.075	1.00
93_G	114_L	3.030	1.00
115_K	201_D	2.958	1.00
97_P	226_D	2.848	1.00
365_L	417_A	2.825	1.00
61_T	136_L	2.817	1.00
87_E	121_D	2.699	1.00
136_L	139_K	2.621	1.00
294_S	343_L	2.609	1.00
222_T	251_T	2.598	1.00
345_L	349_I	2.582	1.00
92_D	222_T	2.575	1.00
229_H	401_E	2.435	1.00
102_R	231_S	2.382	1.00
160_W	196_L	2.367	1.00
57_V	83_Y	2.366	1.00
240_E	251_T	2.359	1.00
352_N	395_Y	2.293	1.00
33_R	36_E	2.270	1.00
62_E	80_R	2.268	1.00
242_E	249_T	2.239	1.00
304_F	394_L	2.204	1.00
221_V	280_F	2.192	1.00
94_D	224_T	2.190	1.00
159_T	164_P	2.144	1.00
40_E	102_R	2.131	1.00
153_R	205_N	2.130	1.00
101_K	106_E	2.120	1.00
57_V	81_Y	2.068	1.00
159_T	162_G	2.019	1.00
95_L	210_L	1.978	1.00
61_T	77_T	1.974	1.00
371_R	377_R	1.967	1.00
261_Y	278_S	1.944	1.00
117_S	199_S	1.915	1.00
349_I	353_L	1.903	1.00
113_D	201_D	1.887	1.00
295_E	299_K	1.885	1.00
98_E	111_T	1.877	1.00
159_T	199_S	1.873	1.00
88_T	119_R	1.865	1.00
363_V	388_A	1.853	1.00
64_V	78_V	1.851	1.00
154_E	253_K	1.849	1.00
231_S	285_I	1.845	1.00
66_E	76_R	1.805	1.00
52_A	213_V	1.802	1.00
37_A	103_G	1.791	1.00
27_I	298_V	1.789	1.00
161_N	197_P	1.782	1.00
360_A	364_G	1.782	1.00
57_V	143_V	1.768	1.00
224_T	249_T	1.760	1.00
368_L	421_Y	1.744	1.00
222_T	249_T	1.740	1.00
144_L	200_F	1.726	1.00
325_P	429_Y	1.725	1.00
161_N	196_L	1.715	1.00
119_R	197_P	1.715	1.00
90_D	117_S	1.701	1.00
349_I	357_I	1.700	1.00
101_K	241_R	1.694	1.00
371_R	380_A	1.682	1.00
220_T	253_K	1.672	1.00
228_P	247_G	1.671	1.00
220_T	251_T	1.668	1.00
393_F	411_G	1.666	1.00
65_T	73_T	1.661	1.00
119_R	195_P	1.641	1.00
337_L	412_L	1.639	1.00
212_F	221_V	1.636	1.00
92_D	224_T	1.597	1.00
38_V	208_E	1.581	1.00
25_G	28_S	1.578	1.00
359_A	363_V	1.562	1.00
229_H	287_P	1.561	1.00
96_K	226_D	1.549	1.00
361_A	413_F	1.545	1.00
115_K	199_S	1.544	1.00
68_D	74_E	1.540	1.00
233_D	283_S	1.526	1.00
223_L	282_V	1.521	1.00
157_T	164_P	1.507	1.00
353_L	356_L	1.505	1.00
232_F	243_V	1.502	1.00
344_S	409_S	1.500	1.00
400_L	407_I	1.481	1.00
350_G	353_L	1.476	1.00
361_A	410_I	1.473	1.00
345_L	357_I	1.472	1.00
310_L	419_V	1.471	1.00
27_I	294_S	1.470	1.00
154_E	203_D	1.455	1.00
7_L	11_F	1.436	1.00
156_P	181_I	1.420	1.00
33_R	105_Y	1.419	1.00
117_S	197_P	1.415	1.00
33_R	37_A	1.405	1.00
146_I	204_L	1.402	1.00
34_R	289_D	1.395	1.00
61_T	79_T	1.394	1.00
84_F	123_P	1.350	1.00
307_L	415_I	1.350	1.00
37_A	40_E	1.345	1.00
161_N	194_A	1.345	1.00
213_V	279_A	1.341	1.00
56_L	185_L	1.336	1.00
255_S	258_N	1.332	1.00
34_R	38_V	1.329	1.00
236_F	254_V	1.327	1.00
53_G	89_L	1.320	1.00
58_I	84_F	1.317	1.00
142_L	158_L	1.317	1.00
84_F	125_L	1.316	1.00
35_D	39_A	1.309	1.00
314_L	423_T	1.299	1.00
209_S	283_S	1.293	1.00
165_L	183_A	1.290	1.00
29_E	33_R	1.287	1.00
63_T	77_T	1.278	1.00
368_L	372_S	1.277	1.00
410_I	414_A	1.271	1.00
292_Q	295_E	1.263	1.00
21_A	25_G	1.251	1.00
100_R	109_V	1.227	1.00
48_A	209_S	1.227	1.00
67_T	73_T	1.222	1.00
79_T	139_K	1.220	1.00
124_D	127_A	1.219	1.00
362_T	413_F	1.219	1.00
233_D	281_G	1.217	1.00
63_T	134_D	1.209	1.00
244_T	249_T	1.200	1.00
40_E	44_K	1.190	1.00
306_G	310_L	1.189	1.00
211_S	281_G	1.189	1.00
86_P	216_G	1.187	1.00
369_Y	373_V	1.186	1.00
288_V	292_Q	1.185	1.00
121_D	195_P	1.181	1.00
362_T	365_L	1.171	1.00
367_T	380_A	1.166	1.00
97_P	108_P	1.164	1.00
160_W	165_L	1.151	1.00
365_L	413_F	1.150	1.00
57_V	141_E	1.147	1.00
301_A	339_Y	1.145	1.00
211_S	233_D	1.143	1.00
396_V	407_I	1.142	1.00
46_G	150_R	1.140	1.00
48_A	208_E	1.135	1.00
167_F	200_F	1.133	1.00
365_L	368_L	1.130	1.00
337_L	416_L	1.130	1.00
217_K	256_H	1.118	1.00
60_Y	80_R	1.115	1.00
118_G	197_P	1.113	1.00
239_D	253_K	1.112	1.00
418_A	422_L	1.110	1.00
416_L	419_V	1.097	1.00
16_L	332_G	1.083	1.00
374_L	379_R	1.080	1.00
322_R	429_Y	1.075	1.00
38_V	42_A	1.072	1.00
59_P	137_W	1.071	1.00
31_Q	295_E	1.071	1.00
24_Q	298_V	1.070	1.00
91_I	212_F	1.069	1.00
21_A	24_Q	1.063	1.00
158_L	167_F	1.055	1.00
231_S	283_S	1.054	1.00
17_L	302_I	1.054	1.00
17_L	21_A	1.053	1.00
145_G	177_L	1.052	1.00
312_F	370_S	1.049	1.00
381_L	385_G	1.049	1.00
85_L	261_Y	1.042	1.00
66_E	70_E	1.041	1.00
11_F	15_L	1.037	1.00
88_T	218_T	1.035	1.00
92_D	117_S	1.034	1.00
400_L	403_Y	1.033	1.00
31_Q	35_D	1.031	1.00
334_A	365_L	1.027	1.00
313_F	317_V	1.026	0.99
394_L	398_L	1.025	0.99
87_E	119_R	1.020	0.99
92_D	115_K	1.006	0.99
370_S	383_F	1.005	0.99
94_D	113_D	1.004	0.99
153_R	239_D	1.004	0.99
262_P	265_W	1.003	0.99
228_P	244_T	1.003	0.99
349_I	354_A	1.002	0.99
376_S	379_R	0.994	0.99
421_Y	425_K	0.993	0.99
26_L	29_E	0.992	0.99
336_V	340_L	0.989	0.99
49_Q	148_D	0.987	0.99
118_G	160_W	0.986	0.99
381_L	384_G	0.985	0.99
23_I	336_V	0.981	0.99
50_T	211_S	0.977	0.99
167_F	181_I	0.977	0.99
366_I	387_L	0.972	0.99
62_E	78_V	0.970	0.99
40_E	43_S	0.970	0.99
103_G	285_I	0.969	0.99
68_D	71_G	0.969	0.99
85_L	263_Q	0.968	0.99
144_L	181_I	0.967	0.99
24_Q	295_E	0.967	0.99
35_D	38_V	0.963	0.99
125_L	128_L	0.963	0.99
151_G	236_F	0.961	0.99
37_A	107_V	0.958	0.99
79_T	136_L	0.958	0.99
122_L	195_P	0.950	0.99
169_P	256_H	0.947	0.99
60_Y	266_T	0.945	0.99
52_A	215_L	0.940	0.99
370_S	374_L	0.939	0.99
58_I	137_W	0.938	0.99
3_T	7_L	0.936	0.99
63_T	75_T	0.932	0.99
14_L	17_L	0.931	0.99
49_Q	110_Y	0.927	0.99
212_F	280_F	0.926	0.99
14_L	19_P	0.926	0.99
123_P	128_L	0.925	0.99
323_I	327_Q	0.924	0.99
46_G	151_G	0.923	0.99
116_L	120_F	0.921	0.99
26_L	343_L	0.917	0.99
341_L	409_S	0.912	0.99
395_Y	399_Q	0.912	0.99
165_L	186_P	0.909	0.99
65_T	75_T	0.905	0.99
388_A	392_G	0.902	0.99
13_I	305_I	0.899	0.99
19_P	22_M	0.897	0.99
84_F	264_Q	0.896	0.99
352_N	356_L	0.896	0.99
16_L	305_I	0.893	0.99
218_T	253_K	0.893	0.99
341_L	344_S	0.893	0.99
311_A	386_L	0.890	0.99
82_L	264_Q	0.889	0.99
190_A	193_G	0.886	0.99
394_L	423_T	0.884	0.98
37_A	41_I	0.880	0.98
93_G	112_A	0.879	0.98
290_H	293_K	0.877	0.98
64_V	76_R	0.876	0.98
91_I	116_L	0.875	0.98
340_L	409_S	0.874	0.98
94_D	97_P	0.872	0.98
361_A	365_L	0.871	0.98
4_L	8_L	0.871	0.98
108_P	286_E	0.867	0.98
22_M	25_G	0.867	0.98
36_E	39_A	0.863	0.98
376_S	380_A	0.863	0.98
118_G	122_L	0.862	0.98
290_H	294_S	0.853	0.98
334_A	366_I	0.853	0.98
96_K	113_D	0.853	0.98
254_V	259_R	0.851	0.98
45_W	205_N	0.848	0.98
97_P	110_Y	0.848	0.98
66_E	69_G	0.845	0.98
91_I	221_V	0.844	0.98
160_W	198_F	0.844	0.98
409_S	413_F	0.842	0.98
20_L	336_V	0.842	0.98
148_D	151_G	0.841	0.98
32_S	35_D	0.840	0.98
61_T	134_D	0.839	0.98
415_I	419_V	0.838	0.98
24_Q	28_S	0.838	0.98
301_A	305_I	0.837	0.98
6_L	9_I	0.837	0.98
144_L	202_L	0.836	0.98
52_A	145_G	0.836	0.98
111_T	205_N	0.835	0.98
111_T	203_D	0.835	0.98
167_F	183_A	0.832	0.98
66_E	74_E	0.831	0.98
36_E	40_E	0.829	0.98
130_I	134_D	0.827	0.98
216_G	219_T	0.826	0.98
96_K	111_T	0.825	0.98
312_F	331_V	0.824	0.98
102_R	237_L	0.824	0.98
219_T	280_F	0.822	0.98
149_L	152_I	0.820	0.98
143_V	182_H	0.818	0.98
348_H	403_Y	0.818	0.98
340_L	423_T	0.818	0.98
60_Y	82_L	0.817	0.97
368_L	371_R	0.815	0.97
312_F	315_F	0.809	0.97
150_R	236_F	0.806	0.97
68_D	72_K	0.803	0.97
7_L	10_G	0.799	0.97
90_D	222_T	0.797	0.97
33_R	402_D	0.793	0.97
286_E	292_Q	0.792	0.97
55_V	83_Y	0.790	0.97
232_F	241_R	0.790	0.97
383_F	387_L	0.787	0.97
380_A	384_G	0.787	0.97
29_E	32_S	0.785	0.97
371_R	375_K	0.783	0.97
160_W	185_L	0.781	0.97
208_E	283_S	0.779	0.97
83_Y	143_V	0.779	0.97
58_I	140_A	0.778	0.97
26_L	33_R	0.777	0.97
191_A	194_A	0.776	0.97
295_E	298_V	0.773	0.96
51_I	204_L	0.770	0.96
405_L	409_S	0.767	0.96
106_E	286_E	0.763	0.96
114_L	212_F	0.763	0.96
168_E	256_H	0.762	0.96
141_E	182_H	0.761	0.96
237_L	241_R	0.760	0.96
89_L	216_G	0.758	0.96
308_T	390_L	0.757	0.96
382_L	385_G	0.755	0.96
58_I	135_I	0.754	0.96
14_L	22_M	0.753	0.96
171_T	180_G	0.751	0.96
333_L	416_L	0.749	0.96
288_V	293_K	0.748	0.96
333_L	336_V	0.748	0.96
91_I	219_T	0.747	0.96
323_I	331_V	0.746	0.96
314_L	419_V	0.746	0.96
393_F	407_I	0.745	0.96
359_A	364_G	0.743	0.96
85_L	265_W	0.743	0.96
334_A	417_A	0.741	0.96
229_H	285_I	0.737	0.95
304_F	390_L	0.735	0.95
130_I	133_E	0.733	0.95
102_R	107_V	0.732	0.95
219_T	259_R	0.731	0.95
170_G	182_H	0.730	0.95
404_A	408_G	0.729	0.95
319_S	379_R	0.729	0.95
362_T	394_L	0.728	0.95
294_S	346_S	0.728	0.95
149_L	258_N	0.724	0.95
84_F	122_L	0.724	0.95
315_F	379_R	0.723	0.95
105_Y	293_K	0.721	0.95
230_P	243_V	0.720	0.95
11_F	21_A	0.719	0.95
124_D	128_L	0.719	0.95
153_R	203_D	0.718	0.95
312_F	366_I	0.717	0.95
217_K	263_Q	0.716	0.95
93_G	212_F	0.713	0.95
345_L	410_I	0.710	0.94
407_I	411_G	0.709	0.94
363_V	387_L	0.708	0.94
28_S	32_S	0.703	0.94
395_Y	423_T	0.702	0.94
97_P	284_L	0.701	0.94
211_S	283_S	0.700	0.94
114_L	202_L	0.699	0.94
21_A	28_S	0.696	0.94
98_E	241_R	0.693	0.94
329_L	394_L	0.691	0.94
352_N	399_Q	0.691	0.94
364_G	368_L	0.690	0.94
41_I	106_E	0.689	0.93
225_S	243_V	0.689	0.93
105_Y	312_F	0.688	0.93
159_T	201_D	0.688	0.93
405_L	408_G	0.684	0.93
302_I	306_G	0.683	0.93
41_I	109_V	0.683	0.93
384_G	388_A	0.683	0.93
86_P	215_L	0.681	0.93
236_F	258_N	0.679	0.93
157_T	201_D	0.678	0.93
82_L	125_L	0.677	0.93
219_T	254_V	0.675	0.93
170_G	180_G	0.675	0.93
89_L	219_T	0.674	0.93
404_A	407_I	0.674	0.93
109_V	294_S	0.674	0.93
308_T	362_T	0.672	0.93
46_G	290_H	0.671	0.93
105_Y	416_L	0.669	0.92
27_I	343_L	0.669	0.92
259_R	263_Q	0.669	0.92
17_L	24_Q	0.668	0.92
20_L	24_Q	0.666	0.92
129_G	132_P	0.666	0.92
32_S	39_A	0.662	0.92
69_G	72_K	0.662	0.92
308_T	335_L	0.662	0.92
34_R	290_H	0.659	0.92
193_G	196_L	0.658	0.92
55_V	143_V	0.658	0.92
84_F	120_F	0.657	0.92
3_T	6_L	0.656	0.92
308_T	363_V	0.655	0.92
2_L	24_Q	0.654	0.92
350_G	354_A	0.654	0.92
89_L	198_F	0.653	0.92
168_E	217_K	0.653	0.92
26_L	401_E	0.652	0.91
367_T	371_R	0.650	0.91
6_L	326_V	0.643	0.91
150_R	235_A	0.642	0.91
348_H	354_A	0.640	0.91
49_Q	204_L	0.640	0.91
81_Y	141_E	0.639	0.91
117_S	224_T	0.638	0.91
327_Q	369_Y	0.636	0.90
5_K	316_E	0.634	0.90
314_L	424_R	0.634	0.90
324_H	428_W	0.633	0.90
33_R	40_E	0.632	0.90
169_P	180_G	0.631	0.90
421_Y	424_R	0.631	0.90
99_E	108_P	0.631	0.90
226_D	247_G	0.631	0.90
125_L	130_I	0.630	0.90
403_Y	407_I	0.627	0.90
209_S	233_D	0.626	0.90
139_K	184_P	0.623	0.90
293_K	352_N	0.622	0.89
391_Y	394_L	0.621	0.89
335_L	412_L	0.621	0.89
370_S	373_V	0.620	0.89
225_S	228_P	0.620	0.89
82_L	128_L	0.620	0.89
59_P	140_A	0.620	0.89
157_T	166_A	0.619	0.89
258_N	362_T	0.618	0.89
13_I	302_I	0.618	0.89
396_V	400_L	0.617	0.89
243_V	285_I	0.617	0.89
373_V	380_A	0.617	0.89
232_F	303_L	0.616	0.89
323_I	373_V	0.616	0.89
179_S	260_N	0.615	0.89
6_L	10_G	0.615	0.89
50_T	279_A	0.615	0.89
200_F	210_L	0.615	0.89
93_G	210_L	0.614	0.89
383_F	390_L	0.611	0.89
146_I	181_I	0.611	0.89
230_P	248_F	0.610	0.89
82_L	122_L	0.610	0.89
364_G	367_T	0.610	0.89
397_L	411_G	0.609	0.88
110_Y	210_L	0.607	0.88
67_T	71_G	0.604	0.88
239_D	251_T	0.604	0.88
91_I	215_L	0.603	0.88
18_I	22_M	0.603	0.88
273_Y	276_S	0.602	0.88
259_R	262_P	0.600	0.88
37_A	44_K	0.599	0.88
375_K	425_K	0.597	0.87
303_L	374_L	0.596	0.87
413_F	417_A	0.596	0.87
290_H	346_S	0.596	0.87
265_W	316_E	0.596	0.87
46_G	205_N	0.596	0.87
150_R	294_S	0.596	0.87
242_E	246_D	0.595	0.87
363_V	367_T	0.595	0.87
286_E	326_V	0.594	0.87
417_A	421_Y	0.594	0.87
94_D	226_D	0.594	0.87
424_R	429_Y	0.593	0.87
25_G	29_E	0.589	0.87
393_F	396_V	0.589	0.87
34_R	60_Y	0.588	0.87
348_H	404_A	0.587	0.87
51_I	114_L	0.587	0.87
59_P	138_D	0.586	0.87
318_L	422_L	0.586	0.87
168_E	182_H	0.582	0.86
393_F	406_L	0.582	0.86
372_S	421_Y	0.582	0.86
45_W	207_S	0.582	0.86
326_V	428_W	0.581	0.86
227_W	312_F	0.581	0.86
256_H	260_N	0.580	0.86
5_K	151_G	0.579	0.86
64_V	77_T	0.579	0.86
379_R	383_F	0.577	0.86
327_Q	429_Y	0.576	0.86
289_D	292_Q	0.575	0.85
321_L	379_R	0.573	0.85
4_L	23_I	0.572	0.85
304_F	391_Y	0.571	0.85
210_L	221_V	0.570	0.85
375_K	378_R	0.569	0.85
155_N	218_T	0.568	0.85
290_H	350_G	0.567	0.85
216_G	263_Q	0.566	0.85
286_E	289_D	0.566	0.85
100_R	243_V	0.566	0.85
189_A	193_G	0.565	0.84
137_W	140_A	0.565	0.84
244_T	247_G	0.565	0.84
48_A	211_S	0.564	0.84
306_G	333_L	0.564	0.84
341_L	361_A	0.563	0.84
34_R	37_A	0.561	0.84
28_S	295_E	0.560	0.84
380_A	396_V	0.560	0.84
142_L	160_W	0.558	0.84
263_Q	275_L	0.558	0.84
82_L	135_I	0.557	0.84
13_I	306_G	0.557	0.84
37_A	108_P	0.556	0.84
180_G	183_A	0.555	0.83
218_T	255_S	0.555	0.83
12_L	16_L	0.555	0.83
414_A	418_A	0.551	0.83
65_T	69_G	0.548	0.83
314_L	394_L	0.548	0.83
95_L	112_A	0.546	0.82
44_K	344_S	0.546	0.82
361_A	364_G	0.545	0.82
401_E	405_L	0.545	0.82
29_E	37_A	0.545	0.82
86_P	89_L	0.544	0.82
331_V	366_I	0.544	0.82
66_E	71_G	0.543	0.82
363_V	372_S	0.543	0.82
67_T	72_K	0.541	0.82
19_P	333_L	0.540	0.82
398_L	423_T	0.540	0.82
85_L	216_G	0.540	0.82
232_F	238_P	0.540	0.82
115_K	159_T	0.539	0.82
337_L	361_A	0.538	0.82
337_L	362_T	0.538	0.82
282_V	384_G	0.538	0.82
46_G	207_S	0.537	0.81
229_H	286_E	0.537	0.81
12_L	19_P	0.537	0.81
285_I	289_D	0.537	0.81
213_V	261_Y	0.536	0.81
23_I	340_L	0.536	0.81
84_F	140_A	0.535	0.81
408_G	413_F	0.535	0.81
171_T	182_H	0.535	0.81
128_L	133_E	0.535	0.81
315_F	321_L	0.534	0.81
356_L	360_A	0.534	0.81
16_L	374_L	0.531	0.81
23_I	314_L	0.529	0.80
82_L	137_W	0.529	0.80
22_M	302_I	0.528	0.80
379_R	423_T	0.527	0.80
5_K	328_Y	0.527	0.80
16_L	19_P	0.527	0.80
97_P	227_W	0.527	0.80
42_A	207_S	0.525	0.80
260_N	263_Q	0.525	0.80
154_E	255_S	0.523	0.80
314_L	326_V	0.523	0.80
84_F	124_D	0.522	0.80
27_I	295_E	0.522	0.80
29_E	299_K	0.521	0.79
389_L	414_A	0.521	0.79
162_G	165_L	0.521	0.79
104_I	263_Q	0.521	0.79
65_T	71_G	0.521	0.79
326_V	426_I	0.520	0.79
182_H	260_N	0.519	0.79
377_R	381_L	0.518	0.79
111_T	153_R	0.518	0.79
351_F	398_L	0.517	0.79
115_K	194_A	0.516	0.79
410_I	413_F	0.516	0.79
385_G	389_L	0.516	0.79
51_I	146_I	0.516	0.79
94_D	117_S	0.515	0.79
108_P	400_L	0.515	0.79
289_D	398_L	0.514	0.79
51_I	116_L	0.514	0.79
119_R	163_Q	0.514	0.79
341_L	413_F	0.514	0.79
390_L	415_I	0.513	0.78
186_P	189_A	0.513	0.78
112_A	210_L	0.513	0.78
297_A	304_F	0.512	0.78
308_T	397_L	0.512	0.78
287_P	401_E	0.512	0.78
366_I	383_F	0.511	0.78
259_R	265_W	0.511	0.78
207_S	308_T	0.510	0.78
236_F	280_F	0.509	0.78
94_D	245_D	0.509	0.78
216_G	334_A	0.509	0.78
343_L	350_G	0.509	0.78
189_A	192_A	0.508	0.78
42_A	107_V	0.508	0.78
228_P	241_R	0.508	0.78
121_D	124_D	0.507	0.78
130_I	135_I	0.507	0.78
228_P	243_V	0.506	0.77
293_K	399_Q	0.506	0.77
297_A	351_F	0.506	0.77
39_A	47_G	0.504	0.77
146_I	149_L	0.504	0.77
342_L	397_L	0.503	0.77
112_A	204_L	0.503	0.77
317_V	422_L	0.503	0.77
8_L	19_P	0.502	0.77
254_V	258_N	0.501	0.77
329_L	333_L	0.501	0.77
232_F	237_L	0.500	0.77
51_I	202_L	0.500	0.77

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3b5dA	2	0.2308	19.7	0.978	Contact Map
4aw7A	1	0.4079	15.2	0.979	Contact Map
4m64A	1	0.0956	11.4	0.98	Contact Map
4o9uB	2	0.1818	8.9	0.981	Contact Map
4bwzA	2	0.31	7	0.982	Contact Map
4pgrA	1	0.3753	6.7	0.982	Contact Map
4j05A	3	0.303	6.1	0.982	Contact Map
2i68A	2	0.1772	6	0.982	Contact Map
4zw9A	1	0.3217	5.8	0.982	Contact Map
3wajA	1	0.3403	5.4	0.983	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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