GREMLIN Database
Phage_min_tail - Phage minor tail protein
PFAM: PF05939 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 108 (105)
Sequences: 2963 (2339)
Seq/√Len: 228.3
META: 0.804

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
31_R84_V2.8591.00
86_D105_E2.5561.00
18_R34_D2.5521.00
64_R68_E2.4381.00
39_N62_D2.2961.00
21_T86_D2.0671.00
85_C102_A2.0511.00
54_A100_I2.0411.00
23_Q29_E1.9951.00
43_W72_W1.9571.00
16_K87_S1.9261.00
21_T29_E1.9101.00
71_D80_T1.9011.00
50_R53_E1.8041.00
41_K106_Q1.7871.00
71_D82_K1.7651.00
42_S103_T1.7201.00
20_R34_D1.7091.00
84_V105_E1.6101.00
17_P88_W1.5861.00
62_D88_W1.5391.00
29_E105_E1.4971.00
73_T80_T1.4911.00
42_S105_E1.4811.00
81_G106_Q1.4741.00
7_P47_F1.4461.00
14_S87_S1.3991.00
29_E84_V1.3631.00
90_K98_Y1.3511.00
58_E62_D1.3381.00
33_A67_V1.3241.00
93_V99_T1.3071.00
59_A63_A1.2821.00
55_D59_A1.2771.00
7_P45_L1.2381.00
40_L106_Q1.2381.00
12_S89_S1.2061.00
8_D48_N1.2051.00
33_A38_N1.2041.00
51_E98_Y1.1921.00
58_E90_K1.1831.00
13_K58_E1.1811.00
91_T99_T1.1711.00
60_F64_R1.1641.00
15_S39_N1.1511.00
14_S42_S1.1441.00
44_S103_T1.1431.00
54_A90_K1.1281.00
5_W56_A1.1221.00
58_E88_W1.1191.00
53_E56_A1.1161.00
77_E81_G1.0951.00
20_R32_A1.0941.00
31_R107_V1.0771.00
74_P77_E1.0661.00
63_A68_E1.0641.00
85_C104_F1.0511.00
57_I100_I1.0421.00
25_G28_Y1.0221.00
58_E100_I1.0101.00
17_P39_N1.0031.00
11_A43_W1.0011.00
54_A98_Y0.9931.00
74_P83_F0.9831.00
18_R40_L0.9751.00
33_A65_A0.9721.00
18_R23_Q0.9551.00
84_V107_V0.9291.00
15_S62_D0.8930.99
49_G54_A0.8850.99
14_S44_S0.8820.99
85_C88_W0.8700.99
73_T79_T0.8680.99
13_K43_W0.8680.99
46_T101_T0.8630.99
21_T31_R0.8570.99
60_F70_F0.8510.99
24_F30_Q0.8390.99
41_K62_D0.8360.99
70_F85_C0.8260.99
61_L85_C0.8260.99
94_G97_V0.8240.99
46_T99_T0.8220.99
16_K40_L0.8160.99
17_P40_L0.8110.99
29_E86_D0.8110.99
41_K81_G0.8050.99
51_E55_D0.7940.99
22_A32_A0.7890.99
43_W74_P0.7880.99
89_S101_T0.7660.98
87_S103_T0.7610.98
9_Y95_G0.7590.98
56_A59_A0.7480.98
15_S41_K0.7440.98
19_V38_N0.7440.98
14_S89_S0.7430.98
65_A68_E0.7380.98
48_N99_T0.7340.98
61_L102_A0.7220.97
95_G98_Y0.7170.97
72_W83_F0.7120.97
8_D11_A0.7120.97
46_T49_G0.6990.97
76_D98_Y0.6910.97
69_S82_K0.6870.97
94_G98_Y0.6850.96
25_G30_Q0.6840.96
3_F57_I0.6840.96
74_P78_G0.6790.96
21_T105_E0.6770.96
26_D36_I0.6750.96
51_E96_N0.6630.96
16_K42_S0.6620.96
22_A30_Q0.6580.96
22_A34_D0.6580.96
47_F57_I0.6550.95
52_A59_A0.6530.95
38_N65_A0.6440.95
25_G37_N0.6330.95
49_G53_E0.6290.94
64_R85_C0.6280.94
15_S58_E0.6240.94
48_N97_V0.6230.94
23_Q40_L0.6170.94
39_N88_W0.6120.94
61_L100_I0.6050.93
54_A57_I0.6040.93
44_S101_T0.5990.93
74_P81_G0.5840.92
72_W104_F0.5840.92
55_D90_K0.5820.92
41_K74_P0.5790.92
6_T9_Y0.5790.92
10_G91_T0.5750.91
43_W83_F0.5750.91
74_P79_T0.5740.91
47_F102_A0.5690.91
11_A83_F0.5590.90
72_W75_P0.5580.90
12_S91_T0.5500.89
69_S107_V0.5470.89
15_S88_W0.5390.88
16_K86_D0.5370.88
74_P80_T0.5290.87
41_K83_F0.5270.87
8_D49_G0.5260.87
3_F47_F0.5260.87
59_A79_T0.5250.87
26_D35_G0.5220.87
25_G36_I0.5210.87
19_V66_G0.5180.86
43_W75_P0.5120.86
5_W57_I0.5100.86
43_W81_G0.5050.85
32_A38_N0.5050.85
73_T78_G0.5000.84
32_A67_V0.5000.84
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2axcA 1 0.4352 4.5 0.92 Contact Map
4pqqA 1 0.9444 3.7 0.924 Contact Map
4jmqA 1 0.8333 2.9 0.927 Contact Map
2gnoA 1 0.5278 2.4 0.931 Contact Map
3c7fA 1 0.8611 2.1 0.932 Contact Map
2giaA 1 0.3056 2 0.933 Contact Map
4aanA 2 0.7222 1.9 0.934 Contact Map
2w1sA 1 0.9352 1.8 0.935 Contact Map
1xgkA 1 0.4074 1.7 0.936 Contact Map
2ia1A 2 0.7222 1.6 0.937 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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