PigN - PFAM28P - GREMLIN Contacts

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PigN - Phosphatidylinositolglycan class N (PIG-N)

PFAM:	PF04987	Sequences: EGLRYLQTYDWLFLRTIVTLGYLGWIAYALLTVLKLHVTLLLVTFSSALILVLLYAFLLIQRSPWTYYAYALFPVFFWEEVLAERQVLQAGLKSLLGHIKSGGSYLSLLLGVLLLFVLGLELLVLSFFHREILTVGFLLLALWPLLGTSFLKRNKLLSLSWALSCLLLSVFTLLPVGKVENINLILLGGLLMLLIGLLYLFELSRTLLQILLIVLSMLVTRSSVSSLQAKQGLPLGNQIVGWIILVSSLVLPLLSPTSPNLHRLLSIFLTFAPTFLLLSISYEGLFYLALSLTLLLWIRLEHEILQSSKSKSTSSQFSNSTDITQFRQLTLSDLRIALFFLFFLQVAFFGTGNIASISSFSLSSVYRFIPVFSPFLMGALLILKLLIPFVLVSCAFGALNKRLRLPPSSLFLLVLLISDIMTLNFFFLVKDEGS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_10
Length:	434 (432)
Sequences:	511 (375)
Seq/√Len:	18.0
META:	0.078

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
24_G	78_W	5.484	1.00
233_L	238_Q	5.014	1.00
186_L	217_M	4.438	1.00
14_L	67_Y	3.564	1.00
138_L	166_L	3.278	0.99
18_V	61_Q	3.256	0.99
126_S	133_L	3.230	0.99
232_G	238_Q	3.141	0.99
372_F	375_F	3.113	0.99
126_S	421_M	3.048	0.99
27_A	81_V	2.963	0.99
128_F	424_N	2.889	0.99
128_F	428_L	2.751	0.98
222_S	237_N	2.739	0.98
123_L	133_L	2.726	0.98
369_I	376_L	2.723	0.98
171_F	286_F	2.717	0.98
353_N	356_S	2.703	0.98
22_Y	127_F	2.681	0.98
124_V	128_F	2.661	0.97
277_L	368_F	2.640	0.97
143_W	339_F	2.488	0.96
6_L	370_P	2.440	0.96
291_S	391_L	2.410	0.95
327_R	333_D	2.407	0.95
426_F	431_D	2.383	0.95
424_N	428_L	2.374	0.95
121_E	424_N	2.350	0.95
405_L	409_S	2.325	0.94
343_F	418_S	2.323	0.94
19_T	427_F	2.271	0.94
290_L	392_V	2.264	0.94
10_D	22_Y	2.243	0.93
350_G	377_M	2.223	0.93
298_I	395_A	2.221	0.93
168_L	395_A	2.157	0.92
191_L	288_L	2.130	0.91
21_G	67_Y	2.037	0.89
387_I	392_V	2.015	0.89
57_F	61_Q	2.006	0.88
363_S	366_Y	2.002	0.88
413_L	417_I	1.975	0.88
307_S	311_K	1.938	0.87
353_N	358_S	1.933	0.86
286_F	350_G	1.905	0.86
185_I	370_P	1.905	0.86
7_Q	11_W	1.897	0.85
232_G	237_N	1.884	0.85
255_S	266_S	1.857	0.84
182_I	224_V	1.849	0.84
307_S	313_T	1.823	0.83
134_T	420_I	1.803	0.82
5_Y	9_Y	1.788	0.82
3_L	25_W	1.768	0.81
359_S	375_F	1.741	0.80
344_L	415_L	1.732	0.80
6_L	367_R	1.730	0.80
345_Q	362_L	1.722	0.79
223_S	233_L	1.721	0.79
11_W	172_T	1.713	0.79
360_F	374_P	1.703	0.78
361_S	364_S	1.693	0.78
45_F	48_A	1.660	0.77
15_R	426_F	1.655	0.76
381_L	393_S	1.652	0.76
353_N	374_P	1.647	0.76
124_V	428_L	1.626	0.75
163_L	231_Q	1.624	0.75
226_S	238_Q	1.617	0.75
366_Y	377_M	1.579	0.73
30_L	430_K	1.571	0.72
297_W	348_F	1.554	0.72
353_N	372_F	1.552	0.71
252_P	347_A	1.538	0.71
355_A	374_P	1.516	0.70
212_L	216_S	1.513	0.69
93_K	163_L	1.493	0.68
54_L	260_N	1.493	0.68
311_K	316_Q	1.491	0.68
113_L	187_L	1.484	0.68
362_L	367_R	1.481	0.68
308_S	314_S	1.480	0.68
87_V	188_G	1.461	0.67
364_S	387_I	1.457	0.66
362_L	368_F	1.456	0.66
137_F	346_V	1.454	0.66
180_E	368_F	1.450	0.66
4_R	8_T	1.448	0.66
174_L	188_G	1.445	0.66
121_E	428_L	1.443	0.66
308_S	311_K	1.440	0.66
42_L	46_S	1.417	0.64
11_W	136_G	1.416	0.64
392_V	396_F	1.414	0.64
214_V	292_L	1.408	0.64
185_I	368_F	1.404	0.64
210_I	213_I	1.403	0.63
227_L	234_P	1.402	0.63
185_I	392_V	1.391	0.63
383_L	406_P	1.391	0.63
73_F	77_F	1.386	0.62
358_S	367_R	1.381	0.62
3_L	347_A	1.375	0.62
179_V	279_S	1.371	0.62
96_L	334_L	1.365	0.61
226_S	232_G	1.358	0.61
361_S	368_F	1.336	0.60
17_I	75_V	1.333	0.59
400_N	403_L	1.319	0.59
312_S	318_S	1.305	0.58
242_W	375_F	1.295	0.57
43_V	46_S	1.294	0.57
280_I	361_S	1.291	0.57
353_N	357_I	1.289	0.57
46_S	49_L	1.278	0.56
277_L	363_S	1.276	0.56
73_F	127_F	1.276	0.56
89_Q	93_K	1.273	0.56
294_L	391_L	1.266	0.55
136_G	342_F	1.265	0.55
425_F	433_G	1.265	0.55
241_G	245_L	1.249	0.54
317_F	320_S	1.249	0.54
163_L	319_N	1.242	0.54
115_L	146_L	1.240	0.54
226_S	233_L	1.236	0.53
307_S	310_S	1.230	0.53
242_W	352_G	1.223	0.53
138_L	430_K	1.220	0.53
10_D	18_V	1.216	0.52
190_L	217_M	1.215	0.52
241_G	345_Q	1.214	0.52
425_F	434_S	1.208	0.52
6_L	368_F	1.208	0.52
381_L	426_F	1.207	0.52
374_P	377_M	1.207	0.52
361_S	367_R	1.202	0.51
384_K	433_G	1.188	0.51
315_S	318_S	1.187	0.50
298_I	302_H	1.187	0.50
359_S	374_P	1.186	0.50
413_L	428_L	1.185	0.50
46_S	50_I	1.184	0.50
115_L	337_A	1.181	0.50
345_Q	367_R	1.174	0.50
15_R	381_L	1.164	0.49
345_Q	361_S	1.163	0.49
420_I	424_N	1.161	0.49
175_P	282_Y	1.159	0.49
77_F	367_R	1.141	0.48
287_Y	367_R	1.138	0.47
297_W	301_E	1.136	0.47
209_Q	220_T	1.135	0.47
113_L	320_S	1.133	0.47
364_S	405_L	1.126	0.47
1_E	201_F	1.123	0.47
182_I	227_L	1.123	0.47
126_S	220_T	1.121	0.46
169_S	172_T	1.121	0.46
133_L	364_S	1.120	0.46
421_M	432_E	1.110	0.46
350_G	359_S	1.109	0.46
111_G	391_L	1.108	0.46
141_A	162_A	1.107	0.46
361_S	370_P	1.107	0.46
252_P	365_V	1.106	0.46
78_W	189_G	1.106	0.46
274_T	341_L	1.105	0.45
57_F	427_F	1.097	0.45
283_E	353_N	1.095	0.45
184_L	421_M	1.093	0.45
274_T	364_S	1.092	0.45
172_T	412_L	1.092	0.45
312_S	317_F	1.092	0.45
229_A	337_A	1.090	0.45
130_R	356_S	1.085	0.44
45_F	49_L	1.085	0.44
364_S	378_G	1.083	0.44
274_T	387_I	1.082	0.44
233_L	237_N	1.080	0.44
406_P	421_M	1.079	0.44
363_S	400_N	1.076	0.44
379_A	382_I	1.074	0.44
297_W	340_F	1.074	0.44
174_L	281_S	1.073	0.44
410_L	431_D	1.070	0.43
387_I	424_N	1.063	0.43
372_F	419_D	1.061	0.43
35_K	201_F	1.058	0.43
290_L	414_V	1.057	0.43
220_T	370_P	1.056	0.42
94_S	97_G	1.055	0.42
241_G	362_L	1.055	0.42
3_L	418_S	1.054	0.42
375_F	419_D	1.054	0.42
178_K	358_S	1.048	0.42
241_G	277_L	1.048	0.42
220_T	368_F	1.048	0.42
70_Y	419_D	1.047	0.42
156_L	250_V	1.044	0.42
96_L	398_A	1.042	0.42
358_S	375_F	1.041	0.42
152_K	157_L	1.039	0.41
312_S	315_S	1.037	0.41
137_F	341_L	1.035	0.41
322_D	325_Q	1.032	0.41
290_L	368_F	1.031	0.41
92_L	160_S	1.030	0.41
342_F	385_L	1.028	0.41
18_V	185_I	1.025	0.41
230_K	366_Y	1.023	0.41
15_R	362_L	1.022	0.40
72_L	106_L	1.019	0.40
377_M	381_L	1.018	0.40
293_T	343_F	1.016	0.40
195_I	288_L	1.013	0.40
39_T	250_V	1.008	0.40
208_L	264_L	1.007	0.40
26_I	255_S	1.001	0.39
1_E	88_L	1.001	0.39
391_L	427_F	1.001	0.39
193_L	214_V	1.000	0.39
175_P	180_E	1.000	0.39
88_L	415_L	0.999	0.39
309_K	315_S	0.999	0.39
365_V	377_M	0.998	0.39
145_L	187_L	0.992	0.39
7_Q	429_V	0.991	0.39
171_F	374_P	0.990	0.39
369_I	378_G	0.986	0.38
39_T	42_L	0.985	0.38
317_F	322_D	0.984	0.38
69_A	261_L	0.983	0.38
123_L	364_S	0.978	0.38
20_L	167_L	0.972	0.38
241_G	368_F	0.972	0.38
345_Q	368_F	0.970	0.37
96_L	373_S	0.963	0.37
223_S	368_F	0.960	0.37
137_F	364_S	0.960	0.37
10_D	21_G	0.959	0.37
366_Y	375_F	0.958	0.37
77_F	127_F	0.957	0.37
1_E	404_R	0.956	0.37
364_S	381_L	0.955	0.37
414_V	418_S	0.953	0.36
184_L	428_L	0.952	0.36
142_L	149_S	0.951	0.36
274_T	304_I	0.948	0.36
70_Y	286_F	0.948	0.36
111_G	117_V	0.946	0.36
41_L	46_S	0.945	0.36
45_F	53_L	0.944	0.36
286_F	359_S	0.941	0.36
29_A	368_F	0.940	0.36
241_G	361_S	0.939	0.36
279_S	350_G	0.938	0.36
357_I	375_F	0.938	0.36
50_I	113_L	0.934	0.35
138_L	158_S	0.931	0.35
80_E	83_A	0.930	0.35
130_R	353_N	0.930	0.35
360_F	380_L	0.925	0.35
310_S	314_S	0.925	0.35
90_A	93_K	0.924	0.35
60_I	140_L	0.918	0.34
272_A	291_S	0.917	0.34
275_F	287_Y	0.916	0.34
290_L	347_A	0.916	0.34
312_S	316_Q	0.914	0.34
10_D	431_D	0.914	0.34
223_S	232_G	0.912	0.34
362_L	370_P	0.912	0.34
399_L	427_F	0.911	0.34
22_Y	367_R	0.909	0.34
364_S	424_N	0.909	0.34
120_L	430_K	0.907	0.34
367_R	381_L	0.906	0.34
122_L	290_L	0.900	0.33
15_R	29_A	0.897	0.33
203_L	357_I	0.897	0.33
141_A	166_L	0.896	0.33
242_W	246_V	0.896	0.33
239_I	279_S	0.895	0.33
366_Y	382_I	0.890	0.33
278_L	380_L	0.882	0.32
143_W	176_V	0.880	0.32
124_V	136_G	0.878	0.32
132_I	347_A	0.878	0.32
297_W	365_V	0.876	0.32
130_R	283_E	0.874	0.32
15_R	73_F	0.871	0.32
175_P	178_K	0.869	0.32
10_D	13_F	0.867	0.32
131_E	385_L	0.866	0.32
294_L	395_A	0.866	0.32
88_L	118_L	0.863	0.31
337_A	399_L	0.863	0.31
163_L	167_L	0.862	0.31
311_K	315_S	0.861	0.31
7_Q	14_L	0.860	0.31
133_L	336_I	0.855	0.31
168_L	276_L	0.855	0.31
6_L	73_F	0.854	0.31
426_F	433_G	0.853	0.31
419_D	423_L	0.852	0.31
302_H	371_V	0.851	0.31
206_T	303_E	0.850	0.31
184_L	216_S	0.848	0.31
4_R	431_D	0.847	0.31
154_N	303_E	0.845	0.31
349_F	356_S	0.844	0.30
370_P	392_V	0.842	0.30
197_L	371_V	0.842	0.30
418_S	424_N	0.840	0.30
124_V	424_N	0.839	0.30
371_V	374_P	0.838	0.30
219_V	222_S	0.836	0.30
110_L	190_L	0.835	0.30
396_F	418_S	0.834	0.30
171_F	297_W	0.834	0.30
139_L	142_L	0.831	0.30
43_V	47_S	0.828	0.30
313_T	317_F	0.813	0.29
98_H	218_L	0.812	0.29
346_V	350_G	0.811	0.29
194_L	323_I	0.811	0.29
369_I	401_K	0.810	0.29
107_S	138_L	0.809	0.29
89_Q	117_V	0.804	0.28
135_V	231_Q	0.803	0.28
283_E	374_P	0.801	0.28
299_R	427_F	0.801	0.28
22_Y	32_T	0.801	0.28
241_G	370_P	0.801	0.28
274_T	334_L	0.800	0.28
11_W	273_P	0.799	0.28
396_F	406_P	0.799	0.28
251_L	343_F	0.798	0.28
410_L	415_L	0.797	0.28
33_V	215_L	0.795	0.28
21_G	367_R	0.795	0.28
18_V	386_L	0.792	0.28
310_S	317_F	0.792	0.28
134_T	169_S	0.791	0.28
163_L	247_S	0.791	0.28
126_S	354_I	0.791	0.28
124_V	421_M	0.789	0.28
7_Q	22_Y	0.788	0.28
261_L	302_H	0.785	0.27
300_L	432_E	0.784	0.27
420_I	430_K	0.783	0.27
171_F	355_A	0.782	0.27
200_L	403_L	0.782	0.27
384_K	434_S	0.781	0.27
18_V	381_L	0.773	0.27
187_L	325_Q	0.773	0.27
367_R	422_T	0.770	0.27
146_L	313_T	0.769	0.27
6_L	345_Q	0.769	0.27
30_L	98_H	0.766	0.27
279_S	284_G	0.766	0.27
269_L	280_I	0.766	0.27
286_F	297_W	0.763	0.26
219_V	237_N	0.760	0.26
39_T	89_Q	0.760	0.26
43_V	110_L	0.759	0.26
88_L	96_L	0.759	0.26
95_L	386_L	0.755	0.26
175_P	367_R	0.755	0.26
3_L	387_I	0.754	0.26
10_D	381_L	0.754	0.26
105_Y	250_V	0.753	0.26
1_E	18_V	0.752	0.26
311_K	317_F	0.751	0.26
20_L	59_L	0.751	0.26
311_K	314_S	0.751	0.26
152_K	188_G	0.749	0.26
382_I	387_I	0.748	0.26
193_L	200_L	0.748	0.26
374_P	434_S	0.746	0.26
220_T	290_L	0.746	0.26
21_G	389_F	0.743	0.25
97_G	190_L	0.742	0.25
307_S	312_S	0.742	0.25
134_T	248_S	0.740	0.25
144_P	161_W	0.739	0.25
137_F	172_T	0.737	0.25
22_Y	422_T	0.737	0.25
127_F	275_F	0.737	0.25
312_S	320_S	0.735	0.25
134_T	306_Q	0.733	0.25
133_L	177_G	0.733	0.25
185_I	280_I	0.733	0.25
89_Q	190_L	0.730	0.25
11_W	21_G	0.727	0.25
139_L	148_T	0.726	0.25
115_L	167_L	0.724	0.25
59_L	373_S	0.723	0.25
180_E	185_I	0.723	0.25
156_L	272_A	0.723	0.25
349_F	355_A	0.722	0.24
93_K	170_V	0.721	0.24
212_L	248_S	0.720	0.24
144_P	182_I	0.718	0.24
319_N	325_Q	0.718	0.24
109_L	117_V	0.718	0.24
56_A	124_V	0.717	0.24
403_L	422_T	0.717	0.24
192_M	284_G	0.716	0.24
385_L	421_M	0.716	0.24
23_L	81_V	0.715	0.24
190_L	250_V	0.712	0.24
224_V	280_I	0.712	0.24
360_F	375_F	0.712	0.24
73_F	422_T	0.712	0.24
25_W	419_D	0.710	0.24
124_V	225_S	0.708	0.24
117_V	212_L	0.708	0.24
11_W	16_T	0.707	0.24
178_K	223_S	0.707	0.24
360_F	384_K	0.704	0.24
133_L	282_Y	0.704	0.24
168_L	290_L	0.704	0.24
52_V	142_L	0.703	0.24
128_F	270_T	0.703	0.24
243_I	379_A	0.702	0.24
340_F	422_T	0.701	0.24
22_Y	177_G	0.700	0.24
282_Y	385_L	0.699	0.23
243_I	382_I	0.697	0.23
286_F	301_E	0.697	0.23
363_S	376_L	0.696	0.23
99_I	187_L	0.694	0.23
277_L	341_L	0.693	0.23
81_V	230_K	0.692	0.23
368_F	400_N	0.691	0.23
267_I	386_L	0.691	0.23
190_L	207_L	0.690	0.23
130_R	286_F	0.690	0.23
314_S	320_S	0.689	0.23
365_V	375_F	0.687	0.23
301_E	335_R	0.686	0.23
378_G	381_L	0.685	0.23
142_L	182_I	0.684	0.23
58_L	61_Q	0.684	0.23
263_R	267_I	0.682	0.23
3_L	185_I	0.681	0.23
115_L	166_L	0.681	0.23
282_Y	359_S	0.681	0.23
158_S	291_S	0.680	0.23
142_L	224_V	0.677	0.23
26_I	420_I	0.676	0.22
282_Y	414_V	0.669	0.22
124_V	173_L	0.667	0.22
178_K	365_V	0.665	0.22
314_S	319_N	0.663	0.22
192_M	272_A	0.663	0.22
313_T	316_Q	0.663	0.22
216_S	383_L	0.661	0.22
425_F	428_L	0.661	0.22
396_F	421_M	0.661	0.22
198_L	300_L	0.658	0.22
258_S	391_L	0.657	0.22
286_F	356_S	0.654	0.22
167_L	289_A	0.654	0.22
366_Y	381_L	0.653	0.21
280_I	364_S	0.652	0.21
139_L	318_S	0.651	0.21
253_L	293_T	0.651	0.21
362_L	374_P	0.650	0.21
195_I	254_L	0.648	0.21
333_D	340_F	0.648	0.21
308_S	313_T	0.648	0.21
172_T	358_S	0.648	0.21
223_S	241_G	0.648	0.21
17_I	71_A	0.647	0.21
310_S	313_T	0.645	0.21
189_G	333_D	0.645	0.21
10_D	412_L	0.644	0.21
39_T	97_G	0.642	0.21
135_V	214_V	0.642	0.21
310_S	315_S	0.641	0.21
44_T	49_L	0.639	0.21
353_N	375_F	0.638	0.21
273_P	338_L	0.636	0.21
341_L	405_L	0.635	0.21
203_L	207_L	0.634	0.21
129_H	339_F	0.633	0.21
164_S	195_I	0.632	0.21
59_L	145_L	0.631	0.21
148_T	320_S	0.631	0.21
353_N	359_S	0.630	0.21
345_Q	422_T	0.629	0.21
6_L	358_S	0.627	0.20
31_L	84_E	0.626	0.20
342_F	428_L	0.626	0.20
159_L	210_I	0.625	0.20
251_L	270_T	0.624	0.20
279_S	363_S	0.624	0.20
121_E	128_F	0.622	0.20
217_M	254_L	0.622	0.20
17_I	287_Y	0.622	0.20
287_Y	347_A	0.621	0.20
165_C	293_T	0.620	0.20
150_F	248_S	0.618	0.20
314_S	317_F	0.617	0.20
64_P	252_P	0.617	0.20
171_F	350_G	0.616	0.20
365_V	389_F	0.615	0.20
20_L	67_Y	0.614	0.20
339_F	411_F	0.613	0.20
345_Q	370_P	0.613	0.20
2_G	18_V	0.612	0.20
349_F	380_L	0.610	0.20
393_S	431_D	0.609	0.20
275_F	367_R	0.606	0.20
144_P	165_C	0.606	0.20
73_F	188_G	0.605	0.20
364_S	397_G	0.605	0.20
363_S	371_V	0.605	0.20
51_L	58_L	0.604	0.20
125_L	424_N	0.603	0.19
226_S	237_N	0.602	0.19
42_L	166_L	0.600	0.19
315_S	322_D	0.600	0.19
97_G	215_L	0.599	0.19
54_L	225_S	0.596	0.19
17_I	28_Y	0.595	0.19
411_F	429_V	0.592	0.19
411_F	431_D	0.592	0.19
271_F	287_Y	0.592	0.19
123_L	237_N	0.590	0.19
305_L	330_T	0.590	0.19
28_Y	76_F	0.588	0.19
109_L	186_L	0.588	0.19
124_V	425_F	0.585	0.19
119_G	141_A	0.584	0.19
309_K	313_T	0.584	0.19
184_L	420_I	0.583	0.19
355_A	375_F	0.581	0.19
6_L	397_G	0.580	0.19
277_L	370_P	0.580	0.19
241_G	280_I	0.580	0.19
308_S	316_Q	0.576	0.18
345_Q	389_F	0.576	0.18
311_K	321_T	0.576	0.18
364_S	418_S	0.575	0.18
53_L	104_S	0.574	0.18
49_L	231_Q	0.571	0.18
346_V	377_M	0.570	0.18
361_S	397_G	0.569	0.18
340_F	348_F	0.569	0.18
136_G	172_T	0.568	0.18
242_W	351_T	0.568	0.18
10_D	414_V	0.567	0.18
195_I	225_S	0.567	0.18
216_S	317_F	0.565	0.18
142_L	314_S	0.565	0.18
2_G	134_T	0.565	0.18
307_S	315_S	0.565	0.18
268_F	294_L	0.565	0.18
364_S	428_L	0.560	0.18
21_G	364_S	0.559	0.18
363_S	390_V	0.559	0.18
169_S	420_I	0.557	0.18
119_G	337_A	0.557	0.18
41_L	47_S	0.556	0.18
11_W	361_S	0.556	0.18
81_V	329_L	0.556	0.18
51_L	55_Y	0.555	0.18
8_T	13_F	0.555	0.18
231_Q	309_K	0.554	0.18
280_I	367_R	0.554	0.18
363_S	372_F	0.553	0.18
119_G	133_L	0.552	0.18
419_D	434_S	0.552	0.18
127_F	181_N	0.551	0.18
67_Y	429_V	0.549	0.17
110_L	198_L	0.549	0.17
122_L	163_L	0.549	0.17
389_F	414_V	0.548	0.17
282_Y	392_V	0.547	0.17
338_L	367_R	0.546	0.17
10_D	33_V	0.546	0.17
132_I	430_K	0.546	0.17
140_L	343_F	0.546	0.17
118_L	322_D	0.543	0.17
99_I	146_L	0.543	0.17
97_G	194_L	0.542	0.17
183_N	247_S	0.542	0.17
42_L	167_L	0.542	0.17
358_S	362_L	0.540	0.17
286_F	374_P	0.540	0.17
216_S	230_K	0.539	0.17
123_L	182_I	0.539	0.17
21_G	58_L	0.538	0.17
263_R	365_V	0.537	0.17
117_V	264_L	0.536	0.17
127_F	367_R	0.535	0.17
353_N	371_V	0.535	0.17
133_L	136_G	0.534	0.17
220_T	223_S	0.534	0.17
109_L	194_L	0.533	0.17
73_F	227_L	0.532	0.17
272_A	367_R	0.532	0.17
385_L	391_L	0.531	0.17
334_L	343_F	0.531	0.17
277_L	336_I	0.530	0.17
223_S	370_P	0.530	0.17
318_S	322_D	0.530	0.17
76_F	408_S	0.530	0.17
90_A	203_L	0.527	0.17
224_V	284_G	0.527	0.17
391_L	394_C	0.524	0.17
1_E	243_I	0.524	0.17
46_S	311_K	0.524	0.17
19_T	375_F	0.522	0.17
20_L	247_S	0.521	0.17
6_L	363_S	0.521	0.17
134_T	172_T	0.520	0.16
310_S	319_N	0.519	0.16
67_Y	389_F	0.518	0.16
50_I	106_L	0.518	0.16
297_W	349_F	0.518	0.16
223_S	275_F	0.518	0.16
318_S	337_A	0.518	0.16
51_L	163_L	0.517	0.16
104_S	110_L	0.515	0.16
309_K	317_F	0.515	0.16
283_E	355_A	0.514	0.16
307_S	317_F	0.510	0.16
295_L	343_F	0.509	0.16
183_N	288_L	0.509	0.16
16_T	298_I	0.509	0.16
168_L	289_A	0.508	0.16
356_S	380_L	0.508	0.16
133_L	361_S	0.507	0.16
62_R	187_L	0.507	0.16
258_S	409_S	0.506	0.16
92_L	386_L	0.505	0.16
144_P	252_P	0.505	0.16
193_L	376_L	0.505	0.16
39_T	92_L	0.504	0.16
2_G	5_Y	0.504	0.16
53_L	92_L	0.502	0.16
304_I	322_D	0.501	0.16
119_G	338_L	0.500	0.16

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4xesA	1	0.1774	37.8	0.971	Contact Map
4grvA	1	0.1659	29.7	0.972	Contact Map
4ib4A	1	0.1544	25.7	0.973	Contact Map
2z73A	2	0.1982	18.2	0.975	Contact Map
4ujpL	1	0.0599	17	0.975	Contact Map
2ks9A	1	0.2097	15.4	0.976	Contact Map
2r4rA	1	0.129	13.6	0.976	Contact Map
4mbsA	1	0.212	12	0.977	Contact Map
1u19A	2	0.2212	11.4	0.977	Contact Map
3pblA	1	0.1336	11.2	0.977	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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