GREMLIN Database
HK97-gp10_like - Bacteriophage HK97-gp10, putative tail-component
PFAM: PF04883 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 81 (76)
Sequences: 13245 (11315)
Seq/√Len: 1298.0
META: 0.88

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
31_L53_V2.8741.00
31_L35_K2.6291.00
27_A66_V2.5871.00
33_E37_N2.5431.00
41_V48_R2.3051.00
38_A51_I2.0171.00
31_L51_I1.9301.00
24_R53_V1.9261.00
28_E53_V1.9161.00
26_A29_V1.8771.00
39_P48_R1.6341.00
47_L75_A1.6191.00
22_A26_A1.5701.00
28_E31_L1.5611.00
4_L8_K1.5601.00
15_V18_A1.5421.00
34_A51_I1.5091.00
46_R72_A1.4641.00
76_H80_F1.4571.00
51_I70_N1.4471.00
27_A53_V1.4201.00
47_L78_V1.3911.00
33_E36_A1.3901.00
46_R49_R1.3901.00
43_T46_R1.3301.00
6_K9_K1.3081.00
46_R50_S1.3071.00
11_P14_E1.2431.00
30_V34_A1.2231.00
38_A47_L1.2011.00
34_A38_A1.1971.00
74_Y77_Y1.1691.00
73_E77_Y1.1491.00
23_L66_V1.1341.00
34_A37_N1.1181.00
26_A30_V1.1121.00
11_P16_R1.1051.00
14_E18_A1.0961.00
52_T69_G1.0821.00
25_A29_V1.0771.00
18_A22_A1.0681.00
29_V33_E1.0561.00
23_L27_A1.0391.00
70_N75_A1.0301.00
11_P15_V1.0301.00
24_R28_E1.0251.00
74_Y78_V0.9431.00
38_A78_V0.9401.00
46_R74_Y0.8751.00
20_R64_L0.8731.00
6_K11_P0.8691.00
39_P78_V0.8651.00
60_K63_G0.8571.00
22_A25_A0.8491.00
45_G48_R0.8431.00
70_N73_E0.8361.00
35_K48_R0.8091.00
24_R66_V0.8041.00
30_V68_V0.8001.00
15_V19_V0.7981.00
19_V22_A0.7971.00
69_G72_A0.7741.00
58_K61_G0.7691.00
28_E32_A0.7481.00
18_A21_K0.7241.00
5_K8_K0.7211.00
38_A48_R0.7181.00
20_R66_V0.7161.00
30_V33_E0.7071.00
3_L7_L0.6961.00
2_E6_K0.6891.00
55_K58_K0.6761.00
47_L50_S0.6721.00
19_V64_L0.6571.00
45_G49_R0.6511.00
73_E76_H0.6461.00
10_L15_V0.6441.00
16_R64_L0.6411.00
37_N79_E0.6371.00
50_S72_A0.6291.00
32_A35_K0.6171.00
20_R24_R0.6161.00
50_S70_N0.6151.00
12_K16_R0.6151.00
34_A70_N0.6111.00
67_E70_N0.6111.00
56_K59_K0.6041.00
12_K17_K0.6041.00
35_K51_I0.6031.00
29_V32_A0.6011.00
42_D46_R0.6001.00
5_K9_K0.6001.00
6_K10_L0.5961.00
77_Y80_F0.5961.00
23_L26_A0.5911.00
32_A36_A0.5901.00
65_T68_V0.5771.00
50_S71_N0.5761.00
58_K63_G0.5701.00
53_V66_V0.5671.00
57_V60_K0.5641.00
14_E17_K0.5621.00
17_K21_K0.5561.00
16_R20_R0.5541.00
28_E49_R0.5451.00
50_S75_A0.5441.00
31_L52_T0.5411.00
56_K63_G0.5411.00
12_K15_V0.5401.00
4_L11_P0.5321.00
19_V23_L0.5151.00
42_D45_G0.5141.00
39_P42_D0.5081.00
47_L74_Y0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3lnuA 1 0.3457 10.4 0.834 Contact Map
1s16A 2 0.3951 8 0.842 Contact Map
3lk4B 1 0.4198 6.6 0.848 Contact Map
3zkbA 5 0.4321 6.2 0.849 Contact Map
4urlA 1 0.4815 5.8 0.852 Contact Map
1kijA 2 0.4568 5.4 0.854 Contact Map
4wubA 2 0.4568 5.1 0.855 Contact Map
2zciA 2 0.3704 5 0.856 Contact Map
3m9dG 1 0.1852 4.6 0.859 Contact Map
2p4sA 3 0.358 4.6 0.859 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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