GREMLIN Database
ATE_N - Arginine-tRNA-protein transferase, N terminus
PFAM: PF04376 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 84 (72)
Sequences: 10324 (5044)
Seq/√Len: 594.4
META: 0.876

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
72_P75_E5.0181.00
50_S55_Y2.8621.00
78_P82_Q2.5961.00
39_Y43_L2.3771.00
15_R61_P2.3261.00
79_S82_Q2.2981.00
12_R65_A2.2711.00
4_H14_A2.2341.00
41_A45_A2.0651.00
40_D44_R2.0291.00
76_F82_Q1.9921.00
3_P13_Q1.9911.00
17_L58_A1.8471.00
9_L12_R1.8321.00
40_D43_L1.8281.00
46_G68_P1.7271.00
59_C66_C1.6421.00
34_L54_L1.5411.00
35_A38_L1.5361.00
3_P61_P1.5241.00
17_L56_R1.5221.00
3_P15_R1.5031.00
12_R62_G1.3521.00
64_R67_V1.2751.00
5_P13_Q1.2541.00
58_A61_P1.1871.00
78_P83_R1.1471.00
7_P14_A1.1281.00
4_H16_K1.0961.00
81_S84_R1.0461.00
20_D23_G1.0321.00
9_L65_A1.0201.00
42_L47_F1.0121.00
4_H7_P1.0091.00
5_P11_G1.0001.00
14_A57_P0.9871.00
19_T23_G0.9351.00
36_P40_D0.9201.00
49_R55_Y0.8791.00
5_P10_P0.8581.00
41_A44_R0.8371.00
48_R66_C0.8281.00
23_G35_A0.8181.00
40_D46_G0.8041.00
20_D24_P0.7971.00
19_T47_F0.7731.00
58_A64_R0.7711.00
20_D51_G0.7601.00
48_R55_Y0.7591.00
37_A41_A0.7321.00
22_S41_A0.7231.00
49_R68_P0.7221.00
20_D52_N0.6951.00
38_L41_A0.6901.00
18_F21_P0.6811.00
42_L54_L0.6791.00
77_R80_R0.6771.00
71_V76_F0.6741.00
36_P39_Y0.6721.00
47_F68_P0.6701.00
78_P81_S0.6681.00
39_Y51_G0.6641.00
16_K57_P0.6611.00
13_Q61_P0.6551.00
21_P34_L0.6411.00
22_S52_N0.6361.00
15_R58_A0.6351.00
9_L69_V0.6261.00
22_S45_A0.6251.00
4_H51_G0.6241.00
50_S54_L0.6241.00
74_A77_R0.6211.00
23_G45_A0.6191.00
66_C84_R0.6111.00
39_Y69_V0.6101.00
23_G52_N0.6081.00
39_Y67_V0.5941.00
47_F50_S0.5881.00
19_T54_L0.5871.00
24_P77_R0.5871.00
50_S68_P0.5871.00
47_F55_Y0.5771.00
14_A21_P0.5721.00
46_G50_S0.5681.00
43_L54_L0.5631.00
59_C84_R0.5621.00
39_Y54_L0.5601.00
48_R68_P0.5560.99
16_K51_G0.5540.99
14_A51_G0.5500.99
59_C62_G0.5500.99
50_S57_P0.5490.99
20_D45_A0.5440.99
20_D43_L0.5440.99
66_C71_V0.5310.99
39_Y56_R0.5290.99
42_L45_A0.5270.99
7_P54_L0.5230.99
42_L50_S0.5210.99
23_G58_A0.5200.99
57_P66_C0.5170.99
24_P34_L0.5130.99
59_C65_A0.5110.99
62_G77_R0.5110.99
18_F51_G0.5110.99
9_L42_L0.5050.99
10_P13_Q0.5000.99
18_F53_F0.5000.99
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1d2vC 2 0.3214 11.7 0.892 Contact Map
4un4B 1 0.8095 3.7 0.914 Contact Map
2m4gA 1 0.6429 3.1 0.917 Contact Map
3mhsC 1 0.3333 2.9 0.919 Contact Map
2dvjA 1 0.7857 2.7 0.92 Contact Map
1kptA 2 0.6905 2.6 0.92 Contact Map
2jvmA 1 0.3571 2.2 0.924 Contact Map
3m7kA 2 0.9048 2.2 0.924 Contact Map
3mazA 1 0.7143 2.1 0.924 Contact Map
3zmsC 1 0 2 0.925 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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