SpoVR - PFAM28P - GREMLIN Contacts

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SpoVR - SpoVR like protein

PFAM:	PF04293	Sequences: DWTFEELERYDEEIEEIAREFGLDFYPNQFEIITAEQMLDAYAYVGMPTRYPHWSFGKEFERLKKQYRYGLSGLAYEIVINSNPCIAYLMEENTLTMQKLVIAHVYGHNDFFKNNYLFRQTTDARDIIDYLAFAARRIRRYEERYGREAVERFLDACHALMNHVDRYKRPRKLSLEEEEERQEEREEYINPYNDLWRTLPKKKEKEEEEEEKRKRFPPEPEEDLLYFIEKHAPLLEPWQRDILRIVREEAQYFYPQRQTKIMNEGWASYWHYRIMNELDLTDGEMLEFAKSHSGVVSPSYGGINPYALGFALFEDIERRWECPTEEDREWFPDIAGSGREKIFEVRENYNDESFIRQYLTPELIRELKLFVYEDDGDEGEVEAIHDERGYRKVREALLAQYTNGGRPNIQVVDVDYRN	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_10
Length:	418 (414)
Sequences:	4525 (2510)
Seq/√Len:	123.4
META:	0.805

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
138_I	242_I	4.226	1.00
24_D	113_K	4.187	1.00
362_E	366_E	3.851	1.00
85_C	109_N	3.590	1.00
262_M	313_F	3.366	1.00
361_P	365_R	3.039	1.00
27_P	83_N	3.030	1.00
17_I	274_I	3.021	1.00
26_Y	124_A	2.935	1.00
268_S	310_F	2.920	1.00
149_A	239_Q	2.882	1.00
262_M	354_F	2.821	1.00
349_Y	358_Y	2.754	1.00
153_F	239_Q	2.681	1.00
315_D	319_R	2.648	1.00
17_I	20_E	2.641	1.00
312_L	363_L	2.539	1.00
313_F	342_I	2.526	1.00
66_Q	72_S	2.523	1.00
268_S	296_V	2.468	1.00
141_Y	241_D	2.430	1.00
337_S	340_E	2.378	1.00
137_R	241_D	2.368	1.00
83_N	125_R	2.360	1.00
110_D	266_W	2.334	1.00
96_T	288_F	2.313	1.00
178_E	181_R	2.300	1.00
375_D	384_I	2.292	1.00
16_E	19_R	2.280	1.00
317_E	339_R	2.264	1.00
157_C	243_L	2.250	1.00
273_R	277_E	2.247	1.00
318_R	366_E	2.247	1.00
273_R	317_E	2.211	1.00
307_A	311_A	2.173	1.00
33_I	41_A	2.172	1.00
13_E	16_E	2.168	1.00
97_M	291_S	2.142	1.00
334_I	341_K	2.083	1.00
296_V	310_F	2.044	1.00
8_E	12_E	2.037	1.00
15_E	19_R	2.033	1.00
364_I	393_V	2.028	1.00
324_T	327_D	2.024	1.00
20_E	277_E	1.998	1.00
228_I	243_L	1.990	1.00
21_F	277_E	1.985	1.00
315_D	360_T	1.966	1.00
39_L	63_L	1.960	1.00
325_E	329_E	1.948	1.00
154_L	246_V	1.939	1.00
110_D	346_R	1.925	1.00
111_F	262_M	1.918	1.00
341_K	344_E	1.911	1.00
142_E	147_R	1.901	1.00
64_K	68_R	1.900	1.00
149_A	152_R	1.879	1.00
320_W	341_K	1.862	1.00
11_D	106_Y	1.860	1.00
266_W	270_W	1.857	1.00
28_N	109_N	1.820	1.00
16_E	20_E	1.790	1.00
197_R	200_P	1.777	1.00
236_E	239_Q	1.776	1.00
373_E	386_D	1.740	1.00
326_E	330_W	1.727	1.00
178_E	182_Q	1.709	1.00
311_A	314_E	1.680	1.00
11_D	15_E	1.670	1.00
176_E	179_E	1.668	1.00
202_K	205_K	1.648	1.00
363_L	366_E	1.637	1.00
138_I	245_I	1.634	1.00
179_E	182_Q	1.617	1.00
111_F	263_N	1.611	1.00
266_W	346_R	1.603	1.00
141_Y	145_Y	1.601	1.00
273_R	314_E	1.594	1.00
28_N	87_A	1.565	1.00
10_Y	14_I	1.545	1.00
274_I	279_D	1.521	1.00
79_V	105_V	1.515	1.00
362_E	365_R	1.505	1.00
343_F	346_R	1.498	1.00
33_I	38_M	1.497	1.00
229_E	244_R	1.486	1.00
82_S	128_I	1.479	1.00
8_E	11_D	1.477	1.00
337_S	341_K	1.469	1.00
96_T	275_M	1.465	1.00
137_R	141_Y	1.453	1.00
389_G	392_K	1.449	1.00
164_V	251_Q	1.446	1.00
364_I	390_Y	1.443	1.00
363_L	367_L	1.441	1.00
343_F	347_E	1.436	1.00
15_E	25_F	1.433	1.00
18_A	25_F	1.427	1.00
225_L	243_L	1.427	1.00
9_R	12_E	1.423	1.00
15_E	106_Y	1.416	1.00
185_R	189_I	1.414	1.00
103_A	274_I	1.407	1.00
280_L	285_M	1.404	1.00
10_Y	13_E	1.404	1.00
349_Y	357_Q	1.394	1.00
226_Y	230_K	1.383	1.00
261_I	355_I	1.379	1.00
272_Y	310_F	1.379	1.00
19_R	25_F	1.372	1.00
153_F	242_I	1.371	1.00
177_E	180_E	1.361	1.00
411_V	414_V	1.358	1.00
317_E	321_E	1.354	1.00
122_T	130_Y	1.350	1.00
288_F	292_H	1.340	1.00
371_V	396_A	1.336	1.00
272_Y	288_F	1.330	1.00
341_K	358_Y	1.317	1.00
341_K	345_V	1.310	1.00
332_P	335_A	1.308	1.00
311_A	367_L	1.306	1.00
269_Y	339_R	1.298	1.00
134_A	245_I	1.295	1.00
229_E	240_R	1.283	1.00
26_Y	109_N	1.280	1.00
184_E	190_N	1.278	1.00
216_F	227_F	1.275	1.00
269_Y	342_I	1.273	1.00
5_E	8_E	1.267	1.00
322_C	331_F	1.266	1.00
189_I	192_Y	1.266	1.00
195_L	199_L	1.265	1.00
154_L	242_I	1.258	1.00
344_E	348_N	1.251	1.00
10_Y	102_I	1.247	0.99
290_K	293_S	1.237	0.99
307_A	367_L	1.236	0.99
272_Y	314_E	1.235	0.99
315_D	366_E	1.234	0.99
30_F	106_Y	1.229	0.99
216_F	231_H	1.226	0.99
359_L	369_L	1.224	0.99
192_Y	195_L	1.224	0.99
21_F	270_W	1.221	0.99
260_K	406_R	1.214	0.99
280_L	284_E	1.207	0.99
275_M	288_F	1.205	0.99
11_D	102_I	1.201	0.99
190_N	194_D	1.198	0.99
344_E	349_Y	1.194	0.99
313_F	354_F	1.194	0.99
130_Y	248_E	1.189	0.99
181_R	184_E	1.189	0.99
6_E	95_L	1.179	0.99
18_A	106_Y	1.177	0.99
316_I	345_V	1.175	0.99
314_E	317_E	1.160	0.99
324_T	362_E	1.157	0.99
99_K	284_E	1.156	0.99
270_W	343_F	1.156	0.99
28_N	106_Y	1.154	0.99
262_M	316_I	1.146	0.99
326_E	329_E	1.138	0.99
110_D	270_W	1.136	0.99
117_L	350_N	1.133	0.99
196_W	200_P	1.120	0.99
273_R	339_R	1.116	0.99
184_E	188_Y	1.113	0.99
191_P	195_L	1.112	0.99
94_T	287_E	1.102	0.99
17_I	279_D	1.099	0.99
153_F	157_C	1.099	0.99
333_D	336_G	1.099	0.99
190_N	195_L	1.092	0.99
157_C	246_V	1.092	0.99
202_K	206_E	1.092	0.99
392_K	395_E	1.091	0.99
387_E	392_K	1.086	0.99
311_A	363_L	1.086	0.99
46_G	78_I	1.083	0.99
13_E	17_I	1.082	0.99
149_A	236_E	1.081	0.99
349_Y	353_S	1.080	0.99
229_E	243_L	1.079	0.99
37_Q	40_D	1.078	0.99
372_Y	381_V	1.076	0.99
319_R	360_T	1.073	0.98
43_A	63_L	1.073	0.98
9_R	13_E	1.064	0.98
36_E	40_D	1.063	0.98
190_N	193_N	1.060	0.98
116_Y	119_R	1.060	0.98
204_E	208_E	1.059	0.98
215_R	412_V	1.057	0.98
313_F	316_I	1.056	0.98
205_K	209_E	1.053	0.98
59_E	62_R	1.051	0.98
7_L	89_L	1.046	0.98
327_D	330_W	1.040	0.98
162_N	406_R	1.039	0.98
217_P	220_P	1.038	0.98
160_L	225_L	1.035	0.98
185_R	190_N	1.033	0.98
177_E	182_Q	1.029	0.98
311_A	366_E	1.023	0.98
135_A	139_R	1.019	0.98
41_A	82_S	1.019	0.98
52_P	135_A	1.015	0.98
50_R	56_F	1.012	0.98
50_R	249_E	1.006	0.98
6_E	9_R	1.000	0.98
292_H	310_F	0.998	0.98
34_T	37_Q	0.995	0.98
186_E	189_I	0.990	0.97
200_P	203_K	0.988	0.97
315_D	318_R	0.984	0.97
192_Y	200_P	0.982	0.97
247_R	251_Q	0.981	0.97
196_W	199_L	0.969	0.97
21_F	274_I	0.967	0.97
257_R	404_G	0.966	0.97
52_P	139_R	0.962	0.97
175_L	178_E	0.960	0.97
174_S	181_R	0.958	0.97
153_F	235_L	0.954	0.97
204_E	207_E	0.953	0.97
261_I	401_Y	0.951	0.97
148_E	152_R	0.950	0.97
377_D	382_E	0.949	0.97
266_W	342_I	0.947	0.97
364_I	370_F	0.944	0.97
333_D	337_S	0.943	0.97
26_Y	85_C	0.943	0.97
269_Y	317_E	0.941	0.97
10_Y	95_L	0.941	0.97
208_E	211_E	0.940	0.96
7_L	102_I	0.939	0.96
17_I	278_L	0.937	0.96
191_P	196_W	0.937	0.96
194_D	197_R	0.937	0.96
327_D	333_D	0.935	0.96
162_N	257_R	0.932	0.96
14_I	274_I	0.931	0.96
30_F	101_V	0.924	0.96
17_I	277_E	0.922	0.96
207_E	211_E	0.921	0.96
215_R	413_D	0.918	0.96
26_Y	113_K	0.913	0.96
392_K	396_A	0.912	0.96
361_P	390_Y	0.909	0.96
192_Y	199_L	0.904	0.96
323_P	327_D	0.904	0.96
136_R	140_R	0.904	0.96
184_E	189_I	0.898	0.95
218_P	221_E	0.898	0.95
320_W	338_G	0.892	0.95
356_R	395_E	0.892	0.95
22_G	343_F	0.891	0.95
184_E	187_E	0.890	0.95
179_E	183_E	0.890	0.95
206_E	209_E	0.890	0.95
207_E	210_E	0.888	0.95
158_H	161_M	0.886	0.95
25_F	109_N	0.881	0.95
174_S	177_E	0.881	0.95
187_E	190_N	0.880	0.95
186_E	192_Y	0.874	0.95
339_R	343_F	0.874	0.95
78_I	260_K	0.872	0.95
298_P	308_L	0.869	0.95
174_S	179_E	0.867	0.95
266_W	313_F	0.866	0.94
254_Y	257_R	0.865	0.94
126_D	129_D	0.860	0.94
33_I	78_I	0.858	0.94
61_E	65_K	0.857	0.94
170_P	258_Q	0.855	0.94
194_D	202_K	0.855	0.94
65_K	69_Y	0.854	0.94
192_Y	198_T	0.853	0.94
177_E	181_R	0.853	0.94
176_E	182_Q	0.851	0.94
185_R	188_Y	0.851	0.94
226_Y	229_E	0.849	0.94
103_A	275_M	0.849	0.94
356_R	363_L	0.840	0.94
292_H	296_V	0.837	0.93
122_T	125_R	0.834	0.93
253_F	256_Q	0.832	0.93
45_V	59_E	0.832	0.93
38_M	78_I	0.831	0.93
186_E	190_N	0.830	0.93
26_Y	125_R	0.829	0.93
182_Q	186_E	0.829	0.93
33_I	90_M	0.829	0.93
329_E	387_E	0.828	0.93
257_R	403_N	0.827	0.93
206_E	210_E	0.826	0.93
385_H	388_R	0.824	0.93
203_K	207_E	0.822	0.93
174_S	178_E	0.821	0.93
310_F	314_E	0.820	0.93
286_L	290_K	0.820	0.93
20_E	278_L	0.819	0.93
268_S	292_H	0.816	0.93
312_L	315_D	0.816	0.93
334_I	337_S	0.816	0.93
290_K	294_G	0.815	0.92
110_D	114_N	0.810	0.92
25_F	113_K	0.805	0.92
41_A	78_I	0.804	0.92
223_D	247_R	0.800	0.92
24_D	114_N	0.800	0.92
214_K	218_P	0.799	0.92
70_G	73_G	0.799	0.92
272_Y	276_N	0.798	0.92
188_Y	191_P	0.795	0.92
163_H	224_L	0.793	0.91
285_M	289_A	0.789	0.91
182_Q	185_R	0.787	0.91
176_E	181_R	0.784	0.91
192_Y	196_W	0.781	0.91
152_R	239_Q	0.781	0.91
193_N	196_W	0.781	0.91
13_E	281_T	0.781	0.91
221_E	226_Y	0.778	0.91
202_K	207_E	0.776	0.91
175_L	181_R	0.775	0.90
175_L	179_E	0.772	0.90
174_S	180_E	0.771	0.90
275_M	278_L	0.769	0.90
323_P	326_E	0.767	0.90
181_R	185_R	0.766	0.90
244_R	248_E	0.764	0.90
173_L	181_R	0.760	0.90
62_R	66_Q	0.760	0.90
387_E	390_Y	0.756	0.89
192_Y	197_R	0.755	0.89
184_E	191_P	0.751	0.89
394_R	398_L	0.749	0.89
214_K	236_E	0.748	0.89
334_I	358_Y	0.744	0.89
130_Y	134_A	0.744	0.89
13_E	279_D	0.742	0.88
96_T	284_E	0.740	0.88
188_Y	193_N	0.740	0.88
152_R	156_A	0.738	0.88
81_N	256_Q	0.736	0.88
356_R	398_L	0.736	0.88
191_P	197_R	0.736	0.88
79_V	109_N	0.736	0.88
10_Y	99_K	0.735	0.88
118_F	256_Q	0.735	0.88
21_F	273_R	0.734	0.88
110_D	343_F	0.733	0.88
201_K	204_E	0.731	0.88
296_V	307_A	0.731	0.88
72_S	75_A	0.728	0.88
198_T	201_K	0.727	0.87
193_N	200_P	0.726	0.87
371_V	382_E	0.726	0.87
55_S	58_K	0.725	0.87
391_R	395_E	0.724	0.87
276_N	285_M	0.724	0.87
372_Y	389_G	0.724	0.87
33_I	40_D	0.722	0.87
201_K	205_K	0.718	0.87
323_P	330_W	0.713	0.86
225_L	228_I	0.712	0.86
303_I	369_L	0.712	0.86
30_F	105_V	0.706	0.86
185_R	192_Y	0.706	0.86
25_F	28_N	0.705	0.86
120_Q	170_P	0.704	0.86
137_R	245_I	0.701	0.86
173_L	180_E	0.701	0.86
207_E	212_K	0.701	0.86
215_R	220_P	0.700	0.85
66_Q	71_L	0.699	0.85
216_F	219_E	0.697	0.85
320_W	360_T	0.695	0.85
291_S	294_G	0.694	0.85
96_T	291_S	0.693	0.85
319_R	331_F	0.691	0.85
199_L	202_K	0.690	0.85
179_E	186_E	0.689	0.85
399_A	405_G	0.688	0.84
112_F	256_Q	0.687	0.84
209_E	212_K	0.687	0.84
373_E	396_A	0.686	0.84
205_K	211_E	0.686	0.84
213_R	236_E	0.685	0.84
270_W	346_R	0.684	0.84
373_E	382_E	0.682	0.84
352_E	398_L	0.681	0.84
293_S	296_V	0.681	0.84
174_S	182_Q	0.680	0.84
324_T	331_F	0.679	0.84
175_L	182_Q	0.679	0.84
320_W	345_V	0.678	0.84
178_E	184_E	0.676	0.83
344_E	358_Y	0.672	0.83
183_E	186_E	0.672	0.83
205_K	210_E	0.670	0.83
202_K	209_E	0.667	0.83
386_D	389_G	0.666	0.82
403_N	406_R	0.665	0.82
15_E	27_P	0.664	0.82
188_Y	192_Y	0.663	0.82
404_G	408_N	0.663	0.82
122_T	126_D	0.663	0.82
173_L	182_Q	0.663	0.82
261_I	305_P	0.662	0.82
395_E	399_A	0.662	0.82
371_V	386_D	0.661	0.82
193_N	198_T	0.659	0.82
47_M	404_G	0.659	0.82
364_I	369_L	0.657	0.82
62_R	68_R	0.657	0.82
10_Y	17_I	0.656	0.82
257_R	260_K	0.654	0.81
173_L	176_E	0.653	0.81
26_Y	83_N	0.652	0.81
312_L	355_I	0.651	0.81
370_F	386_D	0.650	0.81
16_E	279_D	0.648	0.81
114_N	346_R	0.646	0.81
296_V	299_S	0.646	0.81
359_L	390_Y	0.646	0.81
194_D	198_T	0.644	0.80
126_D	133_F	0.643	0.80
23_L	266_W	0.641	0.80
270_W	273_R	0.641	0.80
323_P	332_P	0.640	0.80
175_L	180_E	0.638	0.80
345_V	358_Y	0.638	0.80
107_G	268_S	0.638	0.80
225_L	247_R	0.638	0.80
266_W	343_F	0.638	0.80
261_I	303_I	0.635	0.79
59_E	63_L	0.634	0.79
275_M	280_L	0.632	0.79
3_T	6_E	0.631	0.79
338_G	341_K	0.630	0.79
373_E	393_V	0.629	0.79
173_L	177_E	0.625	0.78
328_R	362_E	0.625	0.78
63_L	72_S	0.623	0.78
14_I	17_I	0.622	0.78
217_P	228_I	0.622	0.78
4_F	32_I	0.621	0.78
171_R	179_E	0.621	0.78
229_E	247_R	0.619	0.78
37_Q	41_A	0.618	0.78
324_T	334_I	0.618	0.78
67_Y	73_G	0.617	0.77
180_E	184_E	0.617	0.77
206_E	212_K	0.616	0.77
133_F	252_Y	0.615	0.77
224_L	411_V	0.615	0.77
119_R	347_E	0.615	0.77
176_E	180_E	0.613	0.77
76_Y	294_G	0.613	0.77
14_I	99_K	0.613	0.77
226_Y	244_R	0.613	0.77
206_E	211_E	0.613	0.77
328_R	335_A	0.610	0.77
216_F	414_V	0.609	0.77
271_H	292_H	0.608	0.76
191_P	199_L	0.606	0.76
30_F	33_I	0.606	0.76
325_E	328_R	0.604	0.76
184_E	192_Y	0.604	0.76
252_Y	256_Q	0.604	0.76
79_V	106_Y	0.603	0.76
299_S	302_G	0.601	0.76
45_V	257_R	0.601	0.76
99_K	102_I	0.600	0.75
134_A	248_E	0.600	0.75
47_M	131_L	0.600	0.75
116_Y	120_Q	0.599	0.75
260_K	313_F	0.597	0.75
225_L	350_N	0.597	0.75
266_W	269_Y	0.595	0.75
374_D	409_I	0.594	0.75
385_H	389_G	0.594	0.75
172_K	175_L	0.593	0.75
361_P	364_I	0.592	0.75
227_F	414_V	0.592	0.75
318_R	332_P	0.591	0.74
172_K	176_E	0.591	0.74
14_I	102_I	0.590	0.74
312_L	345_V	0.590	0.74
161_M	250_A	0.589	0.74
375_D	378_E	0.588	0.74
11_D	28_N	0.585	0.74
413_D	416_Y	0.583	0.73
340_E	344_E	0.583	0.73
49_T	135_A	0.582	0.73
342_I	346_R	0.582	0.73
312_L	316_I	0.581	0.73
179_E	189_I	0.580	0.73
60_F	64_K	0.580	0.73
177_E	189_I	0.580	0.73
45_V	161_M	0.580	0.73
6_E	10_Y	0.578	0.73
119_R	170_P	0.577	0.73
355_I	401_Y	0.575	0.72
55_S	154_L	0.575	0.72
40_D	64_K	0.574	0.72
194_D	200_P	0.573	0.72
112_F	259_T	0.572	0.72
18_A	23_L	0.572	0.72
262_M	266_W	0.572	0.72
89_L	98_Q	0.571	0.72
171_R	174_S	0.571	0.72
407_P	411_V	0.571	0.72
201_K	208_E	0.571	0.72
200_P	204_E	0.570	0.72
39_L	67_Y	0.569	0.72
216_F	220_P	0.569	0.72
317_E	320_W	0.569	0.72
160_L	224_L	0.568	0.71
176_E	187_E	0.566	0.71
45_V	107_G	0.565	0.71
203_K	210_E	0.565	0.71
217_P	231_H	0.565	0.71
256_Q	263_N	0.564	0.71
88_Y	107_G	0.563	0.71
376_G	382_E	0.563	0.71
143_E	147_R	0.562	0.71
145_Y	149_A	0.562	0.71
281_T	284_E	0.559	0.70
297_S	302_G	0.558	0.70
299_S	303_I	0.554	0.70
81_N	112_F	0.553	0.69
156_A	159_A	0.551	0.69
111_F	266_W	0.551	0.69
67_Y	90_M	0.551	0.69
35_A	90_M	0.551	0.69
275_M	291_S	0.551	0.69
350_N	353_S	0.551	0.69
90_M	107_G	0.551	0.69
303_I	308_L	0.550	0.69
374_D	383_A	0.548	0.69
140_R	144_R	0.546	0.68
202_K	210_E	0.546	0.68
188_Y	195_L	0.544	0.68
272_Y	292_H	0.543	0.68
180_E	183_E	0.541	0.68
127_I	252_Y	0.540	0.68
204_E	212_K	0.539	0.68
256_Q	260_K	0.538	0.67
332_P	336_G	0.537	0.67
38_M	66_Q	0.537	0.67
17_I	280_L	0.535	0.67
184_E	194_D	0.534	0.67
344_E	347_E	0.534	0.67
103_A	107_G	0.534	0.67
117_L	348_N	0.533	0.67
133_F	244_R	0.533	0.67
42_Y	74_L	0.533	0.67
344_E	350_N	0.533	0.67
31_E	292_H	0.532	0.67
25_F	106_Y	0.532	0.67
199_L	205_K	0.529	0.66
284_E	287_E	0.528	0.66
21_F	278_L	0.528	0.66
206_E	328_R	0.528	0.66
343_F	356_R	0.527	0.66
55_S	59_E	0.527	0.66
215_R	218_P	0.526	0.66
225_L	233_P	0.526	0.66
51_Y	158_H	0.525	0.66
28_N	33_I	0.525	0.66
136_R	139_R	0.524	0.65
130_Y	230_K	0.523	0.65
222_E	408_N	0.522	0.65
7_L	32_I	0.521	0.65
165_D	168_K	0.521	0.65
107_G	310_F	0.520	0.65
325_E	362_E	0.519	0.65
361_P	391_R	0.519	0.65
273_R	342_I	0.519	0.65
302_G	308_L	0.518	0.64
181_R	188_Y	0.517	0.64
340_E	343_F	0.516	0.64
194_D	214_K	0.515	0.64
186_E	191_P	0.513	0.64
188_Y	194_D	0.513	0.64
151_E	155_D	0.513	0.64
39_L	42_Y	0.512	0.64
160_L	228_I	0.511	0.63
62_R	72_S	0.511	0.63
268_S	272_Y	0.511	0.63
162_N	250_A	0.511	0.63
354_F	358_Y	0.510	0.63
217_P	227_F	0.509	0.63
375_D	382_E	0.509	0.63
376_G	389_G	0.508	0.63
14_I	26_Y	0.507	0.63
15_E	30_F	0.506	0.63
325_E	335_A	0.504	0.62
13_E	20_E	0.504	0.62
32_I	90_M	0.503	0.62
260_K	403_N	0.503	0.62
204_E	211_E	0.503	0.62
78_I	131_L	0.503	0.62
345_V	354_F	0.503	0.62
79_V	85_C	0.503	0.62
308_L	382_E	0.502	0.62
321_E	338_G	0.502	0.62
259_T	263_N	0.502	0.62
120_Q	169_R	0.502	0.62
365_R	386_D	0.501	0.62
63_L	66_Q	0.501	0.62
183_E	190_N	0.501	0.62
100_L	271_H	0.501	0.62
262_M	273_R	0.501	0.62
117_L	167_Y	0.500	0.62

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3cqbA	4	0.2129	49	0.976	Contact Map
4il3A	1	0.4569	47.8	0.976	Contact Map
4qhjA	2	0.2512	19.7	0.98	Contact Map
4j2cA	1	0.1148	11.6	0.982	Contact Map
2r60A	1	0.3349	9.4	0.983	Contact Map
3a5yA	2	0.1746	9	0.983	Contact Map
2jnzA	1	0.134	8.4	0.983	Contact Map
3i4pA	5	0.3612	8.2	0.983	Contact Map
1k0dA	2	0.1627	8.1	0.983	Contact Map
3glvA	2	0.0574	7.8	0.984	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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