GREMLIN Database
Phage_Mu_F - Phage Mu protein F like protein
PFAM: PF04233 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 112 (109)
Sequences: 25057 (21781)
Seq/√Len: 2086.3
META: 0.911

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
15_E23_R3.3311.00
71_A77_T2.9271.00
78_R81_H2.8351.00
69_W103_N2.7001.00
78_R109_C2.5341.00
68_E88_V2.4561.00
15_E19_E2.3411.00
10_G20_I2.3051.00
38_T105_P2.2781.00
6_A23_R2.2381.00
38_T106_N1.9081.00
89_F95_F1.7461.00
35_R38_T1.7411.00
80_I103_N1.7381.00
8_A12_A1.7191.00
16_S19_E1.7161.00
70_V110_T1.6971.00
71_A85_D1.6881.00
9_Q13_E1.6511.00
41_R106_N1.6401.00
81_H104_H1.6271.00
78_R104_H1.5951.00
73_L77_T1.5691.00
34_S38_T1.5581.00
74_D108_R1.5551.00
90_P93_D1.4861.00
17_I21_A1.4581.00
10_G15_E1.3971.00
4_R8_A1.3821.00
6_A9_Q1.3721.00
45_A49_N1.3521.00
6_A27_R1.3521.00
70_V85_D1.3501.00
73_L85_D1.3121.00
21_A37_E1.2871.00
95_F99_G1.2771.00
35_R39_I1.2741.00
42_T105_P1.2741.00
69_W109_C1.2731.00
66_K88_V1.2501.00
66_K90_P1.2151.00
97_G100_Y1.2061.00
56_Y60_L1.1991.00
49_N52_R1.1871.00
84_L87_K1.1681.00
72_T77_T1.1651.00
79_P83_A1.1481.00
57_A60_L1.1471.00
6_A20_I1.1401.00
56_Y59_N1.1361.00
89_F93_D1.1251.00
50_A54_E1.1171.00
74_D77_T1.1161.00
39_I43_E1.1121.00
38_T42_T1.0481.00
77_T82_A1.0381.00
59_N63_G1.0321.00
46_R50_A1.0321.00
37_E41_R1.0301.00
43_E46_R1.0201.00
101_P105_P1.0011.00
50_A53_L0.9931.00
47_A51_G0.9811.00
28_G31_T0.9791.00
68_E86_G0.9741.00
85_D88_V0.9721.00
5_D9_Q0.9541.00
87_K96_W0.9391.00
84_L89_F0.9291.00
80_I83_A0.9221.00
45_A48_Y0.8991.00
52_R55_A0.8931.00
19_E23_R0.8881.00
80_I84_L0.8841.00
23_R27_R0.8821.00
67_W91_L0.8791.00
21_A25_R0.8741.00
103_N109_C0.8711.00
27_R30_V0.8651.00
37_E106_N0.8281.00
44_T48_Y0.8271.00
42_T46_R0.8261.00
18_D21_A0.8261.00
59_N62_V0.8211.00
41_R45_A0.7911.00
53_L57_A0.7681.00
60_L63_G0.7681.00
71_A109_C0.7531.00
73_L82_A0.7371.00
15_E20_I0.7331.00
84_L98_T0.7301.00
84_L99_G0.7271.00
9_Q23_R0.7181.00
96_W100_Y0.7161.00
59_N64_P0.7141.00
20_I40_A0.7091.00
27_R31_T0.7031.00
78_R105_P0.6931.00
81_H109_C0.6891.00
84_L97_G0.6871.00
79_P82_A0.6831.00
76_R108_R0.6631.00
25_R33_R0.6621.00
65_K90_P0.6611.00
43_E105_P0.6541.00
65_K88_V0.6481.00
34_S106_N0.6461.00
9_Q12_A0.6431.00
28_G32_S0.6391.00
49_N110_T0.6371.00
72_T108_R0.6361.00
20_I24_I0.6341.00
77_T108_R0.6341.00
34_S37_E0.6331.00
20_I44_T0.6311.00
57_A91_L0.6301.00
58_A61_G0.6281.00
102_P105_P0.6241.00
69_W84_L0.6181.00
23_R26_K0.6151.00
30_V34_S0.6141.00
62_V65_K0.6131.00
17_I20_I0.6101.00
54_E57_A0.6101.00
8_A11_I0.6011.00
32_S35_R0.5941.00
17_I37_E0.5861.00
51_G55_A0.5801.00
3_I24_I0.5791.00
18_D22_K0.5791.00
19_E22_K0.5781.00
6_A10_G0.5721.00
71_A74_D0.5711.00
24_I27_R0.5661.00
7_L10_G0.5661.00
103_N107_C0.5661.00
89_F96_W0.5631.00
84_L103_N0.5631.00
25_R36_A0.5601.00
17_I45_A0.5591.00
6_A15_E0.5581.00
41_R108_R0.5581.00
101_P104_H0.5571.00
72_T75_E0.5551.00
33_R37_E0.5441.00
78_R82_A0.5361.00
67_W89_F0.5341.00
95_F98_T0.5331.00
18_D37_E0.5291.00
5_D8_A0.5281.00
11_I48_Y0.5271.00
58_A62_V0.5231.00
61_G64_P0.5211.00
89_F94_P0.5211.00
45_A102_P0.5181.00
91_L94_P0.5171.00
52_R110_T0.5161.00
57_A61_G0.5161.00
71_A82_A0.5151.00
12_A15_E0.5121.00
10_G23_R0.5101.00
52_R56_Y0.5011.00
9_Q15_E0.5001.00
31_T35_R0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3ob4A 2 0.75 6.7 0.899 Contact Map
2hl7A 1 0.3304 6.5 0.9 Contact Map
4tmaI 1 0.2768 5.2 0.905 Contact Map
3g2bA 2 0.4821 5.2 0.905 Contact Map
2b3fA 1 0.3125 5.1 0.905 Contact Map
2xd3A 1 0.2857 5 0.905 Contact Map
3i3vA 3 0.2857 4.9 0.906 Contact Map
4aq4A 1 0.3571 4.3 0.908 Contact Map
2kw0A 1 0.3571 4.3 0.908 Contact Map
4g9qA 3 0.4643 4.2 0.908 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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