Otopetrin - PFAM28P - GREMLIN Contacts

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Otopetrin - Otopetrin

PFAM:	PF03189	Sequences: YLRGGLVLFGIGSLILDGFKIGYYFEFDSWSECKSALEIVFPVIQAVFTFVQTYFLWVHSKDCIQRHKNLTRFGLMHTLATNLLLWLNAVVNESKHQIIEHEERLNSTTSLTNLSFSLAPLSESFTESGNITINLGNSTTTCECSCTTILCSIFQKGSPYLYPFNIEYSLIASAVLYVMWKNVGRRLASSHHHHSHHKLSFDCSGASKGLFLGLLVLVAGIIVLILYFVLVSGPEYKEQALVLYYIYEIVLLLLMSLACLIGLIRMRELDYRKNPTRSLDVILLLGAALGQFLYSYFSIVAIVATTPRDLNALNLAYSLLMILQVTLQNLFIIEGLHRRPNTPEQRRKKPGRQIVTFLLVCNFALWIINTFETQRAESNPVQLDFYGFWAWTIITHISLPLAIFYRF	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_10
Length:	407 (391)
Sequences:	547 (350)
Seq/√Len:	17.7
META:	0.179

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
292_F	326_T	4.130	1.00
209_G	213_G	4.077	1.00
400_P	406_R	3.454	1.00
355_V	358_L	3.273	0.99
329_N	405_Y	3.108	0.99
52_Q	56_L	3.092	0.99
334_E	338_R	2.888	0.98
55_F	82_N	2.791	0.98
33_C	144_C	2.786	0.98
73_F	77_H	2.713	0.98
164_F	333_I	2.647	0.97
358_L	362_N	2.619	0.97
109_T	112_T	2.617	0.97
400_P	407_F	2.504	0.96
225_I	228_F	2.501	0.96
400_P	404_F	2.489	0.96
391_W	400_P	2.454	0.96
5_G	93_E	2.436	0.95
52_Q	55_F	2.380	0.95
239_Q	300_V	2.367	0.95
366_W	391_W	2.342	0.94
40_V	47_V	2.317	0.94
76_M	80_A	2.312	0.94
171_I	174_A	2.305	0.94
366_W	371_F	2.304	0.94
163_P	366_W	2.302	0.94
262_G	331_F	2.264	0.93
400_P	405_Y	2.259	0.93
157_G	297_F	2.203	0.92
366_W	400_P	2.201	0.92
17_D	20_K	2.200	0.92
214_L	363_F	2.176	0.92
362_N	400_P	2.142	0.91
108_T	112_T	2.108	0.90
267_R	271_Y	2.101	0.90
71_T	76_M	2.077	0.90
115_S	118_L	2.068	0.89
197_H	261_I	2.058	0.89
144_C	162_Y	2.057	0.89
82_N	290_G	2.031	0.89
301_A	331_F	1.961	0.87
22_G	176_L	1.923	0.86
191_H	194_H	1.920	0.86
274_N	287_A	1.870	0.84
281_V	337_H	1.857	0.84
362_N	406_R	1.844	0.83
3_R	7_V	1.811	0.82
76_M	282_I	1.759	0.80
259_C	262_G	1.736	0.79
215_L	219_A	1.726	0.79
162_Y	301_A	1.705	0.78
287_A	290_G	1.700	0.78
82_N	93_E	1.686	0.77
163_P	287_A	1.677	0.77
223_V	227_Y	1.670	0.76
75_L	170_L	1.666	0.76
81_T	279_L	1.664	0.76
158_S	183_V	1.660	0.76
363_F	379_N	1.657	0.76
362_N	366_W	1.650	0.75
52_Q	82_N	1.644	0.75
331_F	388_F	1.644	0.75
15_I	204_S	1.628	0.74
182_N	185_R	1.626	0.74
369_N	372_E	1.581	0.72
186_R	330_L	1.579	0.72
57_W	60_S	1.577	0.72
40_V	219_A	1.563	0.71
173_S	178_V	1.535	0.70
96_H	397_I	1.534	0.70
93_E	144_C	1.511	0.69
111_L	116_F	1.505	0.68
391_W	406_R	1.502	0.68
52_Q	59_H	1.501	0.68
294_Y	399_L	1.497	0.68
353_Q	357_F	1.491	0.68
82_N	168_Y	1.475	0.67
91_V	339_R	1.469	0.66
48_F	85_L	1.459	0.66
18_G	57_W	1.455	0.66
308_R	323_L	1.453	0.65
316_A	323_L	1.446	0.65
49_T	59_H	1.445	0.65
363_F	382_Q	1.445	0.65
60_S	180_W	1.441	0.65
76_M	279_L	1.438	0.65
332_I	338_R	1.431	0.64
235_E	250_V	1.429	0.64
361_C	373_T	1.423	0.64
255_M	363_F	1.411	0.63
217_L	401_L	1.407	0.63
14_L	46_A	1.405	0.63
5_G	14_L	1.402	0.63
144_C	163_P	1.400	0.63
363_F	404_F	1.397	0.62
224_L	232_S	1.397	0.62
291_Q	325_V	1.381	0.61
161_L	167_E	1.368	0.61
185_R	299_I	1.365	0.60
48_F	52_Q	1.355	0.60
10_G	49_T	1.340	0.59
401_L	406_R	1.334	0.59
10_G	14_L	1.334	0.59
287_A	324_Q	1.332	0.59
224_L	230_L	1.329	0.58
108_T	111_L	1.325	0.58
169_S	385_F	1.324	0.58
255_M	262_G	1.321	0.58
208_K	211_F	1.309	0.57
164_F	359_L	1.284	0.56
84_L	352_R	1.281	0.56
209_G	283_L	1.278	0.55
56_L	60_S	1.278	0.55
110_S	113_N	1.268	0.55
2_L	9_F	1.260	0.54
41_F	56_L	1.259	0.54
117_S	122_S	1.259	0.54
203_C	211_F	1.258	0.54
22_G	298_S	1.258	0.54
155_Q	162_Y	1.257	0.54
5_G	9_F	1.252	0.54
261_I	323_L	1.251	0.54
168_Y	180_W	1.243	0.53
297_F	394_I	1.240	0.53
202_D	206_A	1.240	0.53
43_V	47_V	1.236	0.53
89_A	301_A	1.231	0.52
281_V	336_L	1.226	0.52
215_L	293_L	1.222	0.52
19_F	53_T	1.218	0.52
118_L	122_S	1.214	0.51
113_N	116_F	1.212	0.51
332_I	336_L	1.212	0.51
52_Q	61_K	1.211	0.51
274_N	277_R	1.209	0.51
18_G	39_I	1.205	0.51
357_F	362_N	1.202	0.51
152_S	226_L	1.200	0.51
82_N	169_S	1.198	0.50
335_G	338_R	1.197	0.50
80_A	330_L	1.189	0.50
112_T	117_S	1.186	0.50
342_T	367_I	1.183	0.50
164_F	399_L	1.179	0.49
209_G	280_D	1.177	0.49
366_W	405_Y	1.170	0.49
42_P	81_T	1.170	0.49
3_R	82_N	1.170	0.49
351_G	355_V	1.169	0.49
382_Q	394_I	1.156	0.48
166_I	331_F	1.154	0.48
351_G	356_T	1.153	0.48
227_Y	339_R	1.149	0.47
220_G	364_A	1.147	0.47
77_H	209_G	1.139	0.47
3_R	10_G	1.138	0.47
353_Q	365_L	1.130	0.46
59_H	269_L	1.125	0.46
209_G	338_R	1.117	0.46
148_T	322_I	1.117	0.46
351_G	359_L	1.116	0.45
136_G	386_Y	1.112	0.45
262_G	354_I	1.111	0.45
74_G	290_G	1.105	0.45
251_L	334_E	1.105	0.45
54_Y	177_Y	1.103	0.45
190_S	193_H	1.102	0.45
84_L	159_P	1.100	0.45
366_W	406_R	1.097	0.44
47_V	260_L	1.097	0.44
137_N	226_L	1.097	0.44
5_G	17_D	1.096	0.44
260_L	264_I	1.087	0.44
380_P	383_L	1.084	0.44
54_Y	60_S	1.082	0.43
13_S	21_I	1.082	0.43
361_C	379_N	1.080	0.43
52_Q	180_W	1.071	0.43
166_I	403_I	1.068	0.43
13_S	17_D	1.065	0.42
52_Q	60_S	1.062	0.42
87_L	394_I	1.055	0.42
40_V	44_I	1.054	0.42
368_I	386_Y	1.052	0.42
320_L	404_F	1.051	0.42
34_K	40_V	1.050	0.42
77_H	351_G	1.047	0.41
161_L	184_G	1.045	0.41
2_L	5_G	1.045	0.41
40_V	321_M	1.044	0.41
374_Q	396_H	1.042	0.41
203_C	207_S	1.040	0.41
31_S	44_I	1.040	0.41
99_I	183_V	1.038	0.41
66_R	177_Y	1.036	0.41
332_I	370_T	1.035	0.41
282_I	366_W	1.033	0.41
42_P	45_Q	1.032	0.40
41_F	59_H	1.029	0.40
280_D	284_L	1.028	0.40
163_P	291_Q	1.024	0.40
287_A	404_F	1.022	0.40
13_S	22_G	1.021	0.40
56_L	59_H	1.019	0.40
373_T	402_A	1.018	0.40
176_L	298_S	1.017	0.40
217_L	220_G	1.016	0.40
299_I	348_K	1.013	0.39
237_K	242_V	1.009	0.39
102_E	106_N	1.008	0.39
389_W	392_T	1.008	0.39
12_G	19_F	1.007	0.39
300_V	319_L	1.007	0.39
298_S	318_S	1.003	0.39
392_T	395_T	0.997	0.38
6_L	12_G	0.996	0.38
84_L	176_L	0.990	0.38
292_F	299_I	0.990	0.38
94_S	253_L	0.988	0.38
120_P	123_E	0.988	0.38
20_K	97_Q	0.982	0.38
168_Y	326_T	0.981	0.37
300_V	303_V	0.974	0.37
215_L	241_L	0.972	0.37
182_N	295_S	0.968	0.37
43_V	140_T	0.968	0.37
172_A	176_L	0.967	0.37
353_Q	359_L	0.966	0.37
281_V	370_T	0.963	0.36
177_Y	283_L	0.962	0.36
315_L	331_F	0.962	0.36
167_E	328_Q	0.958	0.36
165_N	175_V	0.956	0.36
40_V	322_I	0.952	0.36
223_V	252_L	0.945	0.35
342_T	345_Q	0.945	0.35
144_C	391_W	0.941	0.35
162_Y	315_L	0.936	0.35
144_C	366_W	0.934	0.35
203_C	210_L	0.934	0.35
350_P	356_T	0.934	0.35
52_Q	209_G	0.933	0.35
352_R	358_L	0.932	0.35
16_L	20_K	0.932	0.35
109_T	113_N	0.926	0.34
102_E	105_L	0.922	0.34
263_L	266_M	0.920	0.34
347_R	359_L	0.916	0.34
361_C	374_Q	0.916	0.34
135_L	138_S	0.916	0.34
313_L	379_N	0.915	0.34
68_K	251_L	0.908	0.33
392_T	396_H	0.904	0.33
74_G	147_T	0.904	0.33
70_L	254_L	0.903	0.33
369_N	376_A	0.899	0.33
63_C	170_L	0.899	0.33
2_L	269_L	0.897	0.33
93_E	166_I	0.892	0.33
257_L	303_V	0.891	0.33
168_Y	177_Y	0.888	0.32
93_E	98_I	0.885	0.32
254_L	324_Q	0.885	0.32
83_L	260_L	0.881	0.32
7_V	59_H	0.879	0.32
211_F	324_Q	0.876	0.32
177_Y	184_G	0.875	0.32
213_G	351_G	0.874	0.32
154_F	284_L	0.873	0.32
53_T	56_L	0.873	0.32
166_I	173_S	0.872	0.31
352_R	355_V	0.870	0.31
212_L	223_V	0.867	0.31
359_L	386_Y	0.867	0.31
165_N	329_N	0.866	0.31
217_L	250_V	0.865	0.31
62_D	65_Q	0.864	0.31
220_G	224_L	0.864	0.31
91_V	329_N	0.863	0.31
115_S	123_E	0.863	0.31
25_F	37_L	0.861	0.31
178_V	182_N	0.861	0.31
172_A	177_Y	0.860	0.31
52_Q	213_G	0.856	0.31
287_A	363_F	0.854	0.31
238_E	293_L	0.854	0.31
45_Q	169_S	0.852	0.30
279_L	329_N	0.852	0.30
217_L	231_V	0.850	0.30
183_V	296_Y	0.850	0.30
53_T	58_V	0.849	0.30
237_K	322_I	0.848	0.30
353_Q	396_H	0.848	0.30
114_L	118_L	0.848	0.30
21_I	234_P	0.847	0.30
43_V	268_E	0.840	0.30
386_Y	391_W	0.839	0.30
366_W	370_T	0.838	0.30
152_S	253_L	0.837	0.30
182_N	315_L	0.837	0.30
84_L	163_P	0.836	0.30
15_I	21_I	0.836	0.30
15_I	319_L	0.835	0.30
224_L	300_V	0.834	0.30
3_R	287_A	0.830	0.29
23_Y	27_F	0.829	0.29
58_V	287_A	0.828	0.29
183_V	315_L	0.825	0.29
111_L	268_E	0.825	0.29
6_L	30_W	0.823	0.29
336_L	340_P	0.823	0.29
118_L	121_L	0.823	0.29
160_Y	171_I	0.818	0.29
46_A	50_F	0.817	0.29
153_I	323_L	0.815	0.29
94_S	176_L	0.813	0.28
54_Y	174_A	0.804	0.28
10_G	21_I	0.804	0.28
290_G	363_F	0.804	0.28
95_K	162_Y	0.802	0.28
363_F	373_T	0.798	0.28
224_L	231_V	0.794	0.28
56_L	332_I	0.794	0.28
385_F	394_I	0.793	0.27
45_Q	56_L	0.792	0.27
87_L	376_A	0.791	0.27
206_A	227_Y	0.789	0.27
37_L	233_G	0.787	0.27
238_E	246_I	0.783	0.27
345_Q	350_P	0.780	0.27
17_D	93_E	0.780	0.27
36_A	43_V	0.778	0.27
177_Y	313_L	0.776	0.27
90_V	292_F	0.776	0.27
154_F	396_H	0.775	0.27
89_A	95_K	0.773	0.27
279_L	405_Y	0.771	0.26
168_Y	386_Y	0.768	0.26
47_V	134_N	0.767	0.26
11_I	16_L	0.766	0.26
400_P	403_I	0.765	0.26
245_Y	318_S	0.760	0.26
207_S	324_Q	0.759	0.26
15_I	238_E	0.755	0.26
235_E	238_E	0.755	0.26
169_S	213_G	0.751	0.25
331_F	378_S	0.751	0.25
186_R	191_H	0.750	0.25
11_I	93_E	0.749	0.25
255_M	259_C	0.747	0.25
369_N	377_E	0.745	0.25
42_P	87_L	0.744	0.25
44_I	51_V	0.743	0.25
196_H	212_L	0.743	0.25
209_G	352_R	0.742	0.25
325_V	403_I	0.740	0.25
48_F	290_G	0.739	0.25
79_L	334_E	0.738	0.25
93_E	391_W	0.736	0.25
6_L	20_K	0.735	0.25
89_A	371_F	0.735	0.25
174_A	336_L	0.734	0.25
113_N	246_I	0.733	0.25
8_L	18_G	0.732	0.25
101_H	105_L	0.726	0.24
338_R	352_R	0.723	0.24
177_Y	284_L	0.722	0.24
53_T	60_S	0.721	0.24
27_F	42_P	0.720	0.24
56_L	172_A	0.719	0.24
134_N	137_N	0.716	0.24
344_E	348_K	0.716	0.24
40_V	116_F	0.713	0.24
186_R	219_A	0.713	0.24
53_T	353_Q	0.712	0.24
113_N	117_S	0.711	0.24
367_I	371_F	0.710	0.24
15_I	207_S	0.706	0.23
160_Y	168_Y	0.704	0.23
147_T	263_L	0.702	0.23
30_W	33_C	0.701	0.23
94_S	172_A	0.701	0.23
13_S	24_Y	0.700	0.23
48_F	313_L	0.699	0.23
365_L	402_A	0.698	0.23
280_D	283_L	0.694	0.23
144_C	164_F	0.692	0.23
157_G	288_A	0.688	0.23
251_L	256_S	0.686	0.23
291_Q	366_W	0.686	0.23
381_V	403_I	0.684	0.23
117_S	121_L	0.684	0.23
333_I	360_V	0.682	0.22
10_G	52_Q	0.682	0.22
204_S	221_I	0.681	0.22
159_P	366_W	0.681	0.22
280_D	404_F	0.680	0.22
51_V	55_F	0.678	0.22
93_E	225_I	0.678	0.22
48_F	169_S	0.678	0.22
15_I	18_G	0.676	0.22
58_V	207_S	0.675	0.22
17_D	22_G	0.674	0.22
110_S	115_S	0.674	0.22
363_F	389_W	0.672	0.22
20_K	54_Y	0.671	0.22
171_I	175_V	0.670	0.22
7_V	171_I	0.666	0.22
221_I	285_L	0.665	0.22
161_L	366_W	0.664	0.22
9_F	48_F	0.663	0.22
111_L	114_L	0.663	0.22
354_I	364_A	0.662	0.22
44_I	257_L	0.662	0.22
76_M	180_W	0.662	0.22
9_F	328_Q	0.661	0.22
5_G	15_I	0.660	0.22
47_V	261_I	0.660	0.22
368_I	377_E	0.659	0.21
320_L	327_L	0.657	0.21
206_A	356_T	0.655	0.21
54_Y	59_H	0.654	0.21
17_D	21_I	0.653	0.21
45_Q	48_F	0.653	0.21
50_F	57_W	0.652	0.21
221_I	394_I	0.650	0.21
17_D	33_C	0.649	0.21
261_I	344_E	0.648	0.21
336_L	395_T	0.647	0.21
55_F	59_H	0.647	0.21
65_Q	68_K	0.642	0.21
223_V	271_Y	0.641	0.21
168_Y	379_N	0.640	0.21
360_V	375_R	0.640	0.21
71_T	180_W	0.639	0.21
246_I	322_I	0.636	0.21
18_G	218_V	0.633	0.20
134_N	260_L	0.633	0.20
217_L	225_I	0.628	0.20
351_G	357_F	0.626	0.20
147_T	150_L	0.624	0.20
171_I	404_F	0.623	0.20
301_A	371_F	0.623	0.20
16_L	23_Y	0.622	0.20
197_H	205_G	0.622	0.20
21_I	323_L	0.621	0.20
39_I	92_N	0.614	0.20
338_R	351_G	0.614	0.20
136_G	139_T	0.614	0.20
161_L	164_F	0.611	0.20
165_N	289_L	0.610	0.20
7_V	15_I	0.610	0.20
283_L	286_G	0.610	0.20
391_W	396_H	0.607	0.19
363_F	375_R	0.606	0.19
196_H	286_G	0.605	0.19
218_V	297_F	0.605	0.19
184_G	245_Y	0.605	0.19
41_F	58_V	0.604	0.19
177_Y	280_D	0.602	0.19
252_L	255_M	0.602	0.19
362_N	405_Y	0.601	0.19
162_Y	175_V	0.600	0.19
108_T	122_S	0.598	0.19
220_G	227_Y	0.598	0.19
385_F	391_W	0.598	0.19
276_T	285_L	0.597	0.19
259_C	263_L	0.596	0.19
19_F	33_C	0.596	0.19
370_T	404_F	0.594	0.19
365_L	406_R	0.593	0.19
173_S	255_M	0.593	0.19
285_L	333_I	0.593	0.19
328_Q	331_F	0.592	0.19
42_P	279_L	0.591	0.19
32_E	43_V	0.590	0.19
215_L	237_K	0.587	0.19
16_L	21_I	0.587	0.19
169_S	324_Q	0.587	0.19
47_V	138_S	0.586	0.19
164_F	175_V	0.582	0.18
238_E	323_L	0.581	0.18
42_P	55_F	0.580	0.18
187_L	261_I	0.580	0.18
17_D	146_C	0.579	0.18
399_L	405_Y	0.578	0.18
166_I	337_H	0.577	0.18
293_L	307_P	0.575	0.18
375_R	395_T	0.573	0.18
13_S	165_N	0.571	0.18
206_A	246_I	0.571	0.18
80_A	327_L	0.570	0.18
184_G	374_Q	0.568	0.18
14_L	41_F	0.567	0.18
81_T	173_S	0.566	0.18
52_Q	357_F	0.566	0.18
146_C	155_Q	0.564	0.18
84_L	321_M	0.563	0.18
355_V	363_F	0.562	0.18
77_H	81_T	0.561	0.18
203_C	209_G	0.561	0.18
50_F	53_T	0.560	0.18
6_L	14_L	0.560	0.18
53_T	57_W	0.559	0.18
221_I	225_I	0.559	0.18
179_M	183_V	0.558	0.18
16_L	56_L	0.558	0.18
20_K	25_F	0.558	0.18
290_G	406_R	0.556	0.18
280_D	329_N	0.556	0.18
40_V	235_E	0.555	0.17
77_H	213_G	0.555	0.17
113_N	200_S	0.554	0.17
13_S	70_L	0.551	0.17
221_I	245_Y	0.550	0.17
162_Y	304_A	0.550	0.17
210_L	359_L	0.550	0.17
281_V	330_L	0.549	0.17
245_Y	354_I	0.549	0.17
295_S	299_I	0.549	0.17
364_A	376_A	0.548	0.17
231_V	302_I	0.548	0.17
59_H	62_D	0.547	0.17
47_V	222_I	0.547	0.17
371_F	391_W	0.546	0.17
223_V	240_A	0.545	0.17
224_L	228_F	0.545	0.17
328_Q	400_P	0.545	0.17
25_F	150_L	0.544	0.17
50_F	203_C	0.543	0.17
169_S	175_V	0.542	0.17
21_I	26_E	0.541	0.17
75_L	176_L	0.540	0.17
278_S	285_L	0.540	0.17
17_D	87_L	0.539	0.17
221_I	303_V	0.539	0.17
372_E	380_P	0.537	0.17
214_L	243_L	0.536	0.17
111_L	117_S	0.536	0.17
152_S	321_M	0.536	0.17
158_S	218_V	0.534	0.17
18_G	183_V	0.533	0.17
17_D	24_Y	0.530	0.17
174_A	177_Y	0.530	0.17
12_G	33_C	0.530	0.17
357_F	401_L	0.528	0.17
139_T	212_L	0.528	0.17
214_L	397_I	0.526	0.16
372_E	375_R	0.526	0.16
394_I	400_P	0.526	0.16
138_S	319_L	0.525	0.16
92_N	244_Y	0.524	0.16
188_A	348_K	0.523	0.16
34_K	273_K	0.523	0.16
171_I	314_N	0.523	0.16
216_V	344_E	0.523	0.16
374_Q	398_S	0.521	0.16
43_V	316_A	0.520	0.16
199_L	303_V	0.519	0.16
121_L	138_S	0.519	0.16
15_I	34_K	0.518	0.16
161_L	297_F	0.518	0.16
106_N	264_I	0.518	0.16
338_R	394_I	0.517	0.16
45_Q	59_H	0.517	0.16
57_W	62_D	0.517	0.16
44_I	320_L	0.516	0.16
168_Y	214_L	0.515	0.16
40_V	242_V	0.515	0.16
345_Q	349_K	0.514	0.16
16_L	22_G	0.513	0.16
45_Q	63_C	0.510	0.16
357_F	370_T	0.509	0.16
164_F	288_A	0.508	0.16
17_D	35_S	0.508	0.16
388_F	398_S	0.507	0.16
38_E	56_L	0.507	0.16
138_S	257_L	0.504	0.16
173_S	213_G	0.504	0.16
94_S	188_A	0.504	0.16
191_H	195_S	0.504	0.16
70_L	323_L	0.502	0.16
150_L	176_L	0.502	0.16
174_A	339_R	0.501	0.16
112_T	115_S	0.501	0.16
59_H	67_H	0.500	0.16

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4x5mA	2	0.2285	7.6	0.976	Contact Map
4g80S	1	0.3415	5.5	0.978	Contact Map
2llmA	1	0.1057	5.1	0.978	Contact Map
3wu2L	1	0.0909	3.9	0.979	Contact Map
4qncA	2	0.199	3.6	0.98	Contact Map
5a63D	1	0.113	3.4	0.98	Contact Map
4ryoA	1	0.3464	3.3	0.98	Contact Map
3j1zP	8	0.3219	3.2	0.98	Contact Map
2jwaA	2	0.0909	2.6	0.981	Contact Map
1amlA	1	0.0958	2.3	0.982	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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